| Definition | Burkholderia pseudomallei 1106a chromosome I, complete genome. |
|---|---|
| Accession | NC_009076 |
| Length | 3,988,455 |
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The map label for this gene is pgk [H]
Identifier: 126453516
GI number: 126453516
Start: 818493
End: 819686
Strand: Direct
Name: pgk [H]
Synonym: BURPS1106A_0838
Alternate gene names: 126453516
Gene position: 818493-819686 (Clockwise)
Preceding gene: 126452104
Following gene: 126454228
Centisome position: 20.52
GC content: 68.34
Gene sequence:
>1194_bases ATGAGCCAAGTAAAGCGTCTTACCGACCTGATCGCCGAAGGCAAGCTGTCCGGCAAACGCGTGTTCATCCGCGCCGATCT GAACGTGCCGCAGGACGATCACGGCAACATCACCGAAGACACGCGCGTGCGCGCGTCGGTGCCCGCGATCCAGGCGGCGC TCGACGCGGGCGCGGCCGTGATGGTCACGTCGCACCTCGGCCGCCCGACGGAAGGCGAGTTCAAGCCCGAGGATTCGCTC GCGCCCGTCGCGAAGCGCCTGGCCGAGCTGCTCGGCCGCGATGTGCCGCTCGTCGCGAACTGGGTCGAGAACGGGGTCGA GGTCGCGCCCGGGCAGGTCGTGTTGCTCGAGAACTGCCGCGTGAACAAGGGCGAGAAGAAGAACTCGGACGAGCTCGCGC AGAAGATGGCGAAGCTCTGCGACGTCTACGTGAACGACGCGTTCGGCACCGCGCACCGCGCGGAGGCGACCACCCACGGC ATCGCGAAGTACGCCCCCGTCGCATGCGCGGGCCCGCTGCTCGCGGCCGAGCTCGACGCGCTCGGCAAGGCGCTCGGCAA CCCGAAGCGCCCGCTGGTGGCGATCGTCGCGGGCTCGAAGGTGTCGACGAAGCTGACGATCCTGAAGTCGCTCGCGGAGA AGGTCGATCAATTGATCGTCGGCGGCGGCATCGCGAACACGTTCATGCTCGCGGCGGGGCTCGCGATCGGCAAGTCGCTC GCCGAGGCCGATCTCGTCGGCGAGGCGAAGGCGATCATCGACGAAGCCCGCAAGCGCGGCGCGTCAGTGCCGATCCCGAC CGACGTCGTCGTCGCGAAGGAATTCTCGCCGACGGCCGCCGCCACCGTGAAGAAGGTCGCCGACATCGAAGCCGACGACA TGATCCTCGACATCGGCCCGGACACCGCGAAGGCGCTCGCCGGCCAGCTCGAGAAGGCGAGCACGATCGTCTGGAACGGC CCGGTCGGCGTGTTCGAGTTCGACCAGTTCGGCAACGGCACGAAGACGCTCGCCGACGCGATCGCGAGCTCGGCCGCGTT CTCGATCGCGGGCGGCGGCGACACGCTCGCCGCGATCGCGAAGTACGGCATCCACGACAAGGTCAGCTACATCTCGACGG GCGGCGGCGCGTTCCTCGAATTCCTCGAGGGCAAGAAGCTGCCCGCCGTCGAAGTGCTGGAAACGCGCGCGTAA
Upstream 100 bases:
>100_bases CGCGGGCCTCGCCGCGCAAAGCCGGCGGGCCGCGCGAGGCGCCCGGCGCGGCAGCCCGCGCGCGTCGAACCGCCTTCCTT CATCAACCTTCATCAGTCCC
Downstream 100 bases:
>100_bases CGCGCGCGGCGGGGCGCGCGGCGGCGCGTGAGCGCCGGCGTCGCGCCGAGCCGAACGCGCGGGCGGCGCCCGCCCGCGCG ATGCCGGGGCTCACGCGCGA
Product: phosphoglycerate kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 397; Mature: 396
Protein sequence:
>397_residues MSQVKRLTDLIAEGKLSGKRVFIRADLNVPQDDHGNITEDTRVRASVPAIQAALDAGAAVMVTSHLGRPTEGEFKPEDSL APVAKRLAELLGRDVPLVANWVENGVEVAPGQVVLLENCRVNKGEKKNSDELAQKMAKLCDVYVNDAFGTAHRAEATTHG IAKYAPVACAGPLLAAELDALGKALGNPKRPLVAIVAGSKVSTKLTILKSLAEKVDQLIVGGGIANTFMLAAGLAIGKSL AEADLVGEAKAIIDEARKRGASVPIPTDVVVAKEFSPTAAATVKKVADIEADDMILDIGPDTAKALAGQLEKASTIVWNG PVGVFEFDQFGNGTKTLADAIASSAAFSIAGGGDTLAAIAKYGIHDKVSYISTGGGAFLEFLEGKKLPAVEVLETRA
Sequences:
>Translated_397_residues MSQVKRLTDLIAEGKLSGKRVFIRADLNVPQDDHGNITEDTRVRASVPAIQAALDAGAAVMVTSHLGRPTEGEFKPEDSL APVAKRLAELLGRDVPLVANWVENGVEVAPGQVVLLENCRVNKGEKKNSDELAQKMAKLCDVYVNDAFGTAHRAEATTHG IAKYAPVACAGPLLAAELDALGKALGNPKRPLVAIVAGSKVSTKLTILKSLAEKVDQLIVGGGIANTFMLAAGLAIGKSL AEADLVGEAKAIIDEARKRGASVPIPTDVVVAKEFSPTAAATVKKVADIEADDMILDIGPDTAKALAGQLEKASTIVWNG PVGVFEFDQFGNGTKTLADAIASSAAFSIAGGGDTLAAIAKYGIHDKVSYISTGGGAFLEFLEGKKLPAVEVLETRA >Mature_396_residues SQVKRLTDLIAEGKLSGKRVFIRADLNVPQDDHGNITEDTRVRASVPAIQAALDAGAAVMVTSHLGRPTEGEFKPEDSLA PVAKRLAELLGRDVPLVANWVENGVEVAPGQVVLLENCRVNKGEKKNSDELAQKMAKLCDVYVNDAFGTAHRAEATTHGI AKYAPVACAGPLLAAELDALGKALGNPKRPLVAIVAGSKVSTKLTILKSLAEKVDQLIVGGGIANTFMLAAGLAIGKSLA EADLVGEAKAIIDEARKRGASVPIPTDVVVAKEFSPTAAATVKKVADIEADDMILDIGPDTAKALAGQLEKASTIVWNGP VGVFEFDQFGNGTKTLADAIASSAAFSIAGGGDTLAAIAKYGIHDKVSYISTGGGAFLEFLEGKKLPAVEVLETRA
Specific function: Second phase of glycolysis; second step. [C]
COG id: COG0126
COG function: function code G; 3-phosphoglycerate kinase
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphoglycerate kinase family [H]
Homologues:
Organism=Homo sapiens, GI31543397, Length=423, Percent_Identity=42.5531914893617, Blast_Score=284, Evalue=1e-76, Organism=Homo sapiens, GI4505763, Length=406, Percent_Identity=40.8866995073892, Blast_Score=273, Evalue=1e-73, Organism=Escherichia coli, GI1789294, Length=397, Percent_Identity=63.727959697733, Blast_Score=473, Evalue=1e-135, Organism=Caenorhabditis elegans, GI17508823, Length=419, Percent_Identity=43.1980906921241, Blast_Score=300, Evalue=7e-82, Organism=Saccharomyces cerevisiae, GI6319857, Length=408, Percent_Identity=43.1372549019608, Blast_Score=283, Evalue=4e-77, Organism=Drosophila melanogaster, GI17136394, Length=406, Percent_Identity=40.64039408867, Blast_Score=258, Evalue=5e-69, Organism=Drosophila melanogaster, GI24581203, Length=421, Percent_Identity=37.7672209026128, Blast_Score=241, Evalue=4e-64,
Paralogues:
None
Copy number: 2990 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1460 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001576 - InterPro: IPR015901 - InterPro: IPR015911 - InterPro: IPR015824 [H]
Pfam domain/function: PF00162 PGK [H]
EC number: =2.7.2.3 [H]
Molecular weight: Translated: 41233; Mature: 41101
Theoretical pI: Translated: 5.53; Mature: 5.53
Prosite motif: PS00111 PGLYCERATE_KINASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQVKRLTDLIAEGKLSGKRVFIRADLNVPQDDHGNITEDTRVRASVPAIQAALDAGAAV CCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEE MVTSHLGRPTEGEFKPEDSLAPVAKRLAELLGRDVPLVANWVENGVEVAPGQVVLLENCR EEEHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCEECCCCEEEEECCC VNKGEKKNSDELAQKMAKLCDVYVNDAFGTAHRAEATTHGIAKYAPVACAGPLLAAELDA CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHCCHHHHHHHHH LGKALGNPKRPLVAIVAGSKVSTKLTILKSLAEKVDQLIVGGGIANTFMLAAGLAIGKSL HHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH AEADLVGEAKAIIDEARKRGASVPIPTDVVVAKEFSPTAAATVKKVADIEADDMILDIGP HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCEEEECCC DTAKALAGQLEKASTIVWNGPVGVFEFDQFGNGTKTLADAIASSAAFSIAGGGDTLAAIA CHHHHHHHHHHHCCEEEECCCCCEEECCCCCCCHHHHHHHHHHHCCEEECCCCHHHHHHH KYGIHDKVSYISTGGGAFLEFLEGKKLPAVEVLETRA HHCCCCCHHEEECCCHHHHHHHCCCCCCHHHHHHCCC >Mature Secondary Structure SQVKRLTDLIAEGKLSGKRVFIRADLNVPQDDHGNITEDTRVRASVPAIQAALDAGAAV CHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEE MVTSHLGRPTEGEFKPEDSLAPVAKRLAELLGRDVPLVANWVENGVEVAPGQVVLLENCR EEEHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCEECCCCEEEEECCC VNKGEKKNSDELAQKMAKLCDVYVNDAFGTAHRAEATTHGIAKYAPVACAGPLLAAELDA CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHCCHHHHHHHHH LGKALGNPKRPLVAIVAGSKVSTKLTILKSLAEKVDQLIVGGGIANTFMLAAGLAIGKSL HHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH AEADLVGEAKAIIDEARKRGASVPIPTDVVVAKEFSPTAAATVKKVADIEADDMILDIGP HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCEEEECCC DTAKALAGQLEKASTIVWNGPVGVFEFDQFGNGTKTLADAIASSAAFSIAGGGDTLAAIA CHHHHHHHHHHHCCEEEECCCCCEEECCCCCCCHHHHHHHHHHHCCEEECCCCHHHHHHH KYGIHDKVSYISTGGGAFLEFLEGKKLPAVEVLETRA HHCCCCCHHEEECCCHHHHHHHCCCCCCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11823852 [H]