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The map label for this gene is ybaK [H]

Identifier: 126453507

GI number: 126453507

Start: 901637

End: 902128

Strand: Direct

Name: ybaK [H]

Synonym: BURPS1106A_0917

Alternate gene names: 126453507

Gene position: 901637-902128 (Clockwise)

Preceding gene: 126451771

Following gene: 126454626

Centisome position: 22.61

GC content: 66.46

Gene sequence:

>492_bases
ATGAGCAAATCCAAACACGTTTCCGAAACGCCCGCGACGCAGTTCCTGCGCCGCCACGGCGTTGCGTTCGGCGAGCACGT
CTACGAATACGTCGAGCACGGCGGCACATCCGAATCGGCGCGGCAACTGGGCGTCGACGAGCACGCGGTCGTGAAGACGC
TCGTGATGGAAGACGAGCACGCCAAGCCGCTCATCATCCTGATGCACGGCGACCGCACGGTGTCGACCAAGAACCTCGCG
CGGCAGATCGGCGCGAAGCGCGTCGAGCCGTGCAAGCCGGAGGTCGCGAACCGGCATTCGGGCTATCTCGTCGGCGGCAC
GTCGCCGTTCGGCACGAAGAAGGCGATGCCCGTCTATGTCGAATCGACGATCCTCGATCTGCCGTCGATCTACCTGAACG
GCGGCAGGCGCGGCTATCTGGTGAGCCTGGCGCCCGCCGTGCTGGCGACGCTGCTGCAGGCGCGGCCCGTGCAGTGCGCG
AGCGTCGACTGA

Upstream 100 bases:

>100_bases
GTGCCGACCGTGTGGCGACGATCGTGCCACGTGCTCGCCGCGCGGACAATCGGCCGTTCGGACAATAGTCTCGCGCGCCG
CACGCAATTAAAATGCGCGC

Downstream 100 bases:

>100_bases
GGGTTTCACCCGCGTGGCCCGCTGCGCCGCTTCGGTAGAATGAGCGCCGCCGCGGCCTCGCGATCGGGGCCGTCCATCCA
ACCATACGTTGAAACAAGAG

Product: YbaK/prolyl-tRNA synthetase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 162

Protein sequence:

>163_residues
MSKSKHVSETPATQFLRRHGVAFGEHVYEYVEHGGTSESARQLGVDEHAVVKTLVMEDEHAKPLIILMHGDRTVSTKNLA
RQIGAKRVEPCKPEVANRHSGYLVGGTSPFGTKKAMPVYVESTILDLPSIYLNGGRRGYLVSLAPAVLATLLQARPVQCA
SVD

Sequences:

>Translated_163_residues
MSKSKHVSETPATQFLRRHGVAFGEHVYEYVEHGGTSESARQLGVDEHAVVKTLVMEDEHAKPLIILMHGDRTVSTKNLA
RQIGAKRVEPCKPEVANRHSGYLVGGTSPFGTKKAMPVYVESTILDLPSIYLNGGRRGYLVSLAPAVLATLLQARPVQCA
SVD
>Mature_162_residues
SKSKHVSETPATQFLRRHGVAFGEHVYEYVEHGGTSESARQLGVDEHAVVKTLVMEDEHAKPLIILMHGDRTVSTKNLAR
QIGAKRVEPCKPEVANRHSGYLVGGTSPFGTKKAMPVYVESTILDLPSIYLNGGRRGYLVSLAPAVLATLLQARPVQCAS
VD

Specific function: Functions in trans to edit the amino acid from incorrectly charged Cys-tRNA(Pro). May compensate for the lack of Cys-tRNA(Pro) editing by ProRS. Additionally serves as a general deacylase with weak activity against Cys-tRNA(Cys) and Gly- tRNA(Gly), as wel

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=160, Percent_Identity=34.375, Blast_Score=95, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 17733; Mature: 17601

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKSKHVSETPATQFLRRHGVAFGEHVYEYVEHGGTSESARQLGVDEHAVVKTLVMEDEH
CCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHCCCC
AKPLIILMHGDRTVSTKNLARQIGAKRVEPCKPEVANRHSGYLVGGTSPFGTKKAMPVYV
CCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEE
ESTILDLPSIYLNGGRRGYLVSLAPAVLATLLQARPVQCASVD
HHHHHHCCCEEECCCCCEEEEEHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SKSKHVSETPATQFLRRHGVAFGEHVYEYVEHGGTSESARQLGVDEHAVVKTLVMEDEH
CCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHCCCC
AKPLIILMHGDRTVSTKNLARQIGAKRVEPCKPEVANRHSGYLVGGTSPFGTKKAMPVYV
CCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEE
ESTILDLPSIYLNGGRRGYLVSLAPAVLATLLQARPVQCASVD
HHHHHHCCCEEECCCCCEEEEEHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 3012467; 10493123 [H]