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The map label for this gene is slyD [H]

Identifier: 126453454

GI number: 126453454

Start: 2576610

End: 2577155

Strand: Reverse

Name: slyD [H]

Synonym: BURPS1106A_2613

Alternate gene names: 126453454

Gene position: 2577155-2576610 (Counterclockwise)

Preceding gene: 126454144

Following gene: 126451826

Centisome position: 64.62

GC content: 58.61

Gene sequence:

>546_bases
ATGAAAATTGCAAAAAACACTGTCGTATCGGTCGCTTACAAGCTGTCGGATGCGCAAGGCAATCTGATCGAGGAAAGCGA
TGAGCCGATGGTCTATCTGCACGGCGGCTATGATGGCACGTTCCCAAAGATCGAGGAACAACTCGACGGCCAGGAGCCCG
GCTATCAGGCGCAAATCCAGTTGGAGCCGCAGGATGCGTTCGGCGATTACGATCCTGAACTCGTGAAGATCGAGCCGCGC
GACCGCTTTCCCGAGCCACTCGAAGTCGGCATGCAATTCGAAGGCACCCCGGAAGACGGCGACGAGGAAATCGACTCGCT
GATTTACACGGTGACCGACATCGCGGAAGACAAGGTCGTCCTCGACGGCAATCATCCGCTCGCCGGGATGGCGCTGCGCT
TCGCGCTGACCGTCAAGGACGTGCGCGAAGCGACGGAAGACGAGATCGAGCACGAACATGCGCATGGCGCGGAAGGGCTC
GAAATCGTCGATGAGGACGAGGACGACGACAACGAAGGTAACGGGTCAGCGCGTACCCTGCATTGA

Upstream 100 bases:

>100_bases
TCGGACAACGGCGCGCGAGTGCGTTCGCGCACACGGCCGGACGGTTCGGGTAGTGGCCGTTTGGGCATCGTATAATGGCT
GTTGTACTTGGGAGAATTGG

Downstream 100 bases:

>100_bases
GCCGGGCACGGCGATGTCCGGCGCGTCGCCGGGCGTCGCGCCCGATGGCGCGCGGTGATCGAATGAACCTTCATGCGCGC
CGTGCCATCCACCATAGCCG

Product: FKBP-type peptidyl-prolyl cis-trans isomerase

Products: NA

Alternate protein names: PPIase; Metallochaperone slyD [H]

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MKIAKNTVVSVAYKLSDAQGNLIEESDEPMVYLHGGYDGTFPKIEEQLDGQEPGYQAQIQLEPQDAFGDYDPELVKIEPR
DRFPEPLEVGMQFEGTPEDGDEEIDSLIYTVTDIAEDKVVLDGNHPLAGMALRFALTVKDVREATEDEIEHEHAHGAEGL
EIVDEDEDDDNEGNGSARTLH

Sequences:

>Translated_181_residues
MKIAKNTVVSVAYKLSDAQGNLIEESDEPMVYLHGGYDGTFPKIEEQLDGQEPGYQAQIQLEPQDAFGDYDPELVKIEPR
DRFPEPLEVGMQFEGTPEDGDEEIDSLIYTVTDIAEDKVVLDGNHPLAGMALRFALTVKDVREATEDEIEHEHAHGAEGL
EIVDEDEDDDNEGNGSARTLH
>Mature_181_residues
MKIAKNTVVSVAYKLSDAQGNLIEESDEPMVYLHGGYDGTFPKIEEQLDGQEPGYQAQIQLEPQDAFGDYDPELVKIEPR
DRFPEPLEVGMQFEGTPEDGDEEIDSLIYTVTDIAEDKVVLDGNHPLAGMALRFALTVKDVREATEDEIEHEHAHGAEGL
EIVDEDEDDDNEGNGSARTLH

Specific function: Also involved in hydrogenase metallocenter assembly, probably by participating in the nickel insertion step. This function in hydrogenase biosynthesis requires chaperone activity and the presence of the metal-binding domain, but not PPIase activity [H]

COG id: COG1047

COG function: function code O; FKBP-type peptidyl-prolyl cis-trans isomerases 2

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PPIase FKBP-type domain [H]

Homologues:

Organism=Escherichia coli, GI1789748, Length=153, Percent_Identity=38.562091503268, Blast_Score=95, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001179 [H]

Pfam domain/function: PF00254 FKBP_C [H]

EC number: =5.2.1.8 [H]

Molecular weight: Translated: 20086; Mature: 20086

Theoretical pI: Translated: 3.82; Mature: 3.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIAKNTVVSVAYKLSDAQGNLIEESDEPMVYLHGGYDGTFPKIEEQLDGQEPGYQAQIQ
CCCCHHHEEEEEEEECCCCCCEECCCCCCEEEEECCCCCCCCHHHHHCCCCCCCCEEEEE
LEPQDAFGDYDPELVKIEPRDRFPEPLEVGMQFEGTPEDGDEEIDSLIYTVTDIAEDKVV
ECCHHCCCCCCCCEEEECCCCCCCCHHHCCEEECCCCCCCHHHHHHHHHHHHHCCCCCEE
LDGNHPLAGMALRFALTVKDVREATEDEIEHEHAHGAEGLEIVDEDEDDDNEGNGSARTL
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCEECC
H
C
>Mature Secondary Structure
MKIAKNTVVSVAYKLSDAQGNLIEESDEPMVYLHGGYDGTFPKIEEQLDGQEPGYQAQIQ
CCCCHHHEEEEEEEECCCCCCEECCCCCCEEEEECCCCCCCCHHHHHCCCCCCCCEEEEE
LEPQDAFGDYDPELVKIEPRDRFPEPLEVGMQFEGTPEDGDEEIDSLIYTVTDIAEDKVV
ECCHHCCCCCCCCEEEECCCCCCCCHHHCCEEECCCCCCCHHHHHHHHHHHHHCCCCCEE
LDGNHPLAGMALRFALTVKDVREATEDEIEHEHAHGAEGLEIVDEDEDDDNEGNGSARTL
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCEECC
H
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]