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The map label for this gene is rbn [C]

Identifier: 126453311

GI number: 126453311

Start: 1667548

End: 1668861

Strand: Direct

Name: rbn [C]

Synonym: BURPS1106A_1707

Alternate gene names: 126453311

Gene position: 1667548-1668861 (Clockwise)

Preceding gene: 126452819

Following gene: 126454590

Centisome position: 41.81

GC content: 68.34

Gene sequence:

>1314_bases
TTGCCGAAGTTGAGCGTCGATCTCGACACCATCAAGCGTCTCGCGCGCTTCGCCGCGAAGCGCAGCGCGGAAGACCGCAT
CCCGCAGGTCGCGGGCAGCCTCACGTTCACGACGATGCTCGCGCTCGTGCCGCTCGTGACGGTCGCCTTCGCGCTCTTCA
CCGCGTTCCCGATGTTCGCGTCGTTCCAGAATTCGCTGCAGGGCTTCCTCGCCGATCACCTGATGCCCGCGCAGTTCAAC
AGCCAGATCTTCAAGTACCTGAACCAGTTCGCGTCGAAGGCGAAGGGGCTGACGACGGCGGGCCTCATCGTGCTCGTCTT
CACCGCGGTGATGATGATGATGACGATCGAATCCGCGTTCAACCTGATCTGGCGCGTGCGCAAGCCGCGCCCGTTCGCGC
AGCGCGTGCTCGCGTACTGGGCGCTGATCACGCTCGGGCCGCTGCTGTTCGGCGTGAGCCTGTCGATGTCGTCGTACCTG
TTCACGAAATCGCTCGCGTTCGCCGGCTCGACGAGCACGCCGCCGGTCTTCGAATGGCTGCTGGCGGCCGCGTCGCTGCC
GCTCACGGTGCTCGCGTTCACGCTGCTCTACGTGTATCTGCCGAACTGCACGGTCGCGTGGCGCGACGCGGTGGTGGGCG
GCGTGTGCGCGGCGCTCGCGTTCGAGCTCGCCAAGCGCGGCTTCGGCTACTACGTGCGGCGCATTCCCACTTACACGGCG
GTGTACGGCGCGTTCGCGACCGTGCCGATGTTTCTGCTGTGGCTGTATCTGAGCTGGTTCGTCACGCTCGCGGGCGCGAT
GATCGCGTCGGCGCTGCCGGCGATCCGGGTCGGGCAGTTCCACCGGATCCATTACCCGGGCAGCGATCTGCTCGATTCGC
TCGAGCTGCTCGCGCGGCTCGCCGACGCGCAGCAGGCGGGCAAGCCGGGCCACACGGCCGCGCGGCTCGCGCTGATGGCG
CGCTGCGACATGGAAACCGCGCAGCGGCTTTTGTCGACGCTCGAGGAGCGCGAATGGGTCGCGCGGCTGCAAAGCGGCAA
CGACGCCGCGCCGCGCTACGTGATGCTCGCGAACCCGGAGCGGCTGACGGTCGCGAACCTGTTCGACGTGCTCGTGATCG
ACCGCTCCGAGCTCGTCTACCAGGCGCAGCGCGGCCGGACCGAGGTCGATTGCGCGACGCTTGTCGATGCGTTCACGAGC
GAGAAGCTCGATCTGTCGCTCGCGGAGCTGATCGCGCGCCGCAGGCAGGGCGCGTCGCGCGACGCACCGGGCGAGGCGCA
CTCGACGTCCGCGCTGCCGCCGCGCACCGCGTGA

Upstream 100 bases:

>100_bases
TCTTGAGTGAGCGGCTATTATAGGGGCTGAAGCTGCCGCGAAGCGTCGCGGTTCGACCTGCCGCGCCGCGCGCGGCATGT
GCAGCAATAGGAGAAAGCCG

Downstream 100 bases:

>100_bases
CGCGGGAGCGAAGCGCACGAAGCGCACGAAGCGCACGAAGCGCACGAAGCGCACGAAGCGCACGAAGCGCACGAAGCGCA
CGAAGCGCACGAAGCGCACG

Product: tRNA-processing ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 437; Mature: 436

Protein sequence:

>437_residues
MPKLSVDLDTIKRLARFAAKRSAEDRIPQVAGSLTFTTMLALVPLVTVAFALFTAFPMFASFQNSLQGFLADHLMPAQFN
SQIFKYLNQFASKAKGLTTAGLIVLVFTAVMMMMTIESAFNLIWRVRKPRPFAQRVLAYWALITLGPLLFGVSLSMSSYL
FTKSLAFAGSTSTPPVFEWLLAAASLPLTVLAFTLLYVYLPNCTVAWRDAVVGGVCAALAFELAKRGFGYYVRRIPTYTA
VYGAFATVPMFLLWLYLSWFVTLAGAMIASALPAIRVGQFHRIHYPGSDLLDSLELLARLADAQQAGKPGHTAARLALMA
RCDMETAQRLLSTLEEREWVARLQSGNDAAPRYVMLANPERLTVANLFDVLVIDRSELVYQAQRGRTEVDCATLVDAFTS
EKLDLSLAELIARRRQGASRDAPGEAHSTSALPPRTA

Sequences:

>Translated_437_residues
MPKLSVDLDTIKRLARFAAKRSAEDRIPQVAGSLTFTTMLALVPLVTVAFALFTAFPMFASFQNSLQGFLADHLMPAQFN
SQIFKYLNQFASKAKGLTTAGLIVLVFTAVMMMMTIESAFNLIWRVRKPRPFAQRVLAYWALITLGPLLFGVSLSMSSYL
FTKSLAFAGSTSTPPVFEWLLAAASLPLTVLAFTLLYVYLPNCTVAWRDAVVGGVCAALAFELAKRGFGYYVRRIPTYTA
VYGAFATVPMFLLWLYLSWFVTLAGAMIASALPAIRVGQFHRIHYPGSDLLDSLELLARLADAQQAGKPGHTAARLALMA
RCDMETAQRLLSTLEEREWVARLQSGNDAAPRYVMLANPERLTVANLFDVLVIDRSELVYQAQRGRTEVDCATLVDAFTS
EKLDLSLAELIARRRQGASRDAPGEAHSTSALPPRTA
>Mature_436_residues
PKLSVDLDTIKRLARFAAKRSAEDRIPQVAGSLTFTTMLALVPLVTVAFALFTAFPMFASFQNSLQGFLADHLMPAQFNS
QIFKYLNQFASKAKGLTTAGLIVLVFTAVMMMMTIESAFNLIWRVRKPRPFAQRVLAYWALITLGPLLFGVSLSMSSYLF
TKSLAFAGSTSTPPVFEWLLAAASLPLTVLAFTLLYVYLPNCTVAWRDAVVGGVCAALAFELAKRGFGYYVRRIPTYTAV
YGAFATVPMFLLWLYLSWFVTLAGAMIASALPAIRVGQFHRIHYPGSDLLDSLELLARLADAQQAGKPGHTAARLALMAR
CDMETAQRLLSTLEEREWVARLQSGNDAAPRYVMLANPERLTVANLFDVLVIDRSELVYQAQRGRTEVDCATLVDAFTSE
KLDLSLAELIARRRQGASRDAPGEAHSTSALPPRTA

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family [H]

Homologues:

Organism=Escherichia coli, GI1790319, Length=257, Percent_Identity=40.0778210116732, Blast_Score=185, Evalue=5e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 48089; Mature: 47958

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: PS00307 LECTIN_LEGUME_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PKLSVDLDTIKRLARFAAKRSAEDRIPQVAGSLTFTTMLALVPLVTVAFALFTAFPMFA
CCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH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CCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA