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The map label for this gene is ompW [H]

Identifier: 126453273

GI number: 126453273

Start: 3661888

End: 3662619

Strand: Direct

Name: ompW [H]

Synonym: BURPS1106A_3750

Alternate gene names: 126453273

Gene position: 3661888-3662619 (Clockwise)

Preceding gene: 126453629

Following gene: 126451466

Centisome position: 91.81

GC content: 62.43

Gene sequence:

>732_bases
ATGAAACAAAAAATGGCCATTACGGGGGCCGTTGCGCTCGCTTTCGCGGCAGCCGCGACGGGTGCGCACGCGCAATCCGC
AGGCAGCTTCTATGTGACGACCGGCTGGTTCCATCTCGCCCCTCAGGACAGCAGCGATCCGCTGAAGATCATGAACGTCG
GCGGCTCGCCGGTGAATCACGAGGTGCCCAACACGGGCGCGGGCATCGACAATGCGGACACCATCGGCCTCGCCGCCGGC
TACTTCCTGACGGATCACATCGCCACTGAATTGGTCGCCGGGATCCCGCCAAGGTTCAATCTGAACGGCAAAGGCTCGCT
CGAGCAATTCGGCGTGCTCGGTCATGCTTATCAATGGAGCCCGGCGCTCCTCCTCAAGTATTACTTCAACGACGCGAAGG
CGAAATTCCGGCCCTACGTCGGCATCGGCGCCTCGTATATCTGGTTCACCGGCGCGAAGATCACGAACACCGCATTCGAG
CGCGGCGCGCTCGGCGGGCCGACCAGCGTGCAGACCAGCAATCAGTGGGCGCCCGTCCTCAACGCGGGCTTCACGTACAA
CTTCACCGATCACTGGTTCGGCGGGCTGTCGGTGTCGTACATCCCCGTCAGCCTGACGGCCACGCTGACGACGCAGCGCC
CGACGCCGATCGGCAACGTCACGCAGACCTCGCAAGCGAAGATCACGCTGAATCCGATCGTGACCTACCTGAACATCGGC
TACCGTTTCTAA

Upstream 100 bases:

>100_bases
GTCGTGCGAATTCTAGGGAAAATGTTCTAGCTTACAACTCTGTTCTGTTTGAAACACCGTAGTCATAATGAGCACGCCCT
TTTATCGGAGGAGACAAAGG

Downstream 100 bases:

>100_bases
GCGTAGTCGAATATTTGGGGAATGGTTAATTCCGCTGCAATTTGTAGCGGAATTTTCCTGAGGTTACGAGGCGCTCGTCG
CCTCGTGCTCCGGCGGCAGC

Product: ompW family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MKQKMAITGAVALAFAAAATGAHAQSAGSFYVTTGWFHLAPQDSSDPLKIMNVGGSPVNHEVPNTGAGIDNADTIGLAAG
YFLTDHIATELVAGIPPRFNLNGKGSLEQFGVLGHAYQWSPALLLKYYFNDAKAKFRPYVGIGASYIWFTGAKITNTAFE
RGALGGPTSVQTSNQWAPVLNAGFTYNFTDHWFGGLSVSYIPVSLTATLTTQRPTPIGNVTQTSQAKITLNPIVTYLNIG
YRF

Sequences:

>Translated_243_residues
MKQKMAITGAVALAFAAAATGAHAQSAGSFYVTTGWFHLAPQDSSDPLKIMNVGGSPVNHEVPNTGAGIDNADTIGLAAG
YFLTDHIATELVAGIPPRFNLNGKGSLEQFGVLGHAYQWSPALLLKYYFNDAKAKFRPYVGIGASYIWFTGAKITNTAFE
RGALGGPTSVQTSNQWAPVLNAGFTYNFTDHWFGGLSVSYIPVSLTATLTTQRPTPIGNVTQTSQAKITLNPIVTYLNIG
YRF
>Mature_243_residues
MKQKMAITGAVALAFAAAATGAHAQSAGSFYVTTGWFHLAPQDSSDPLKIMNVGGSPVNHEVPNTGAGIDNADTIGLAAG
YFLTDHIATELVAGIPPRFNLNGKGSLEQFGVLGHAYQWSPALLLKYYFNDAKAKFRPYVGIGASYIWFTGAKITNTAFE
RGALGGPTSVQTSNQWAPVLNAGFTYNFTDHWFGGLSVSYIPVSLTATLTTQRPTPIGNVTQTSQAKITLNPIVTYLNIG
YRF

Specific function: Acts As A Receptor For Colicin S4. [C]

COG id: COG3047

COG function: function code M; Outer membrane protein W

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OmpW/AlkL family [H]

Homologues:

Organism=Escherichia coli, GI1787510, Length=233, Percent_Identity=27.4678111587983, Blast_Score=75, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR005618 [H]

Pfam domain/function: PF03922 OmpW [H]

EC number: NA

Molecular weight: Translated: 25900; Mature: 25900

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQKMAITGAVALAFAAAATGAHAQSAGSFYVTTGWFHLAPQDSSDPLKIMNVGGSPVNH
CCCCEEHHHHHHHHHHHHHCCCCCCCCCCEEEEECEEEECCCCCCCCEEEEECCCCCCCC
EVPNTGAGIDNADTIGLAAGYFLTDHIATELVAGIPPRFNLNGKGSLEQFGVLGHAYQWS
CCCCCCCCCCCCCCHHEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCC
PALLLKYYFNDAKAKFRPYVGIGASYIWFTGAKITNTAFERGALGGPTSVQTSNQWAPVL
HHEEEEEECCCCCCCCCCEEECCCEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCEE
NAGFTYNFTDHWFGGLSVSYIPVSLTATLTTQRPTPIGNVTQTSQAKITLNPIVTYLNIG
ECCEEECCCHHCCCCEEEEEEEEEEEEEEEECCCCCCCCCCCCCCEEEEHHEEEEEEECC
YRF
CCC
>Mature Secondary Structure
MKQKMAITGAVALAFAAAATGAHAQSAGSFYVTTGWFHLAPQDSSDPLKIMNVGGSPVNH
CCCCEEHHHHHHHHHHHHHCCCCCCCCCCEEEEECEEEECCCCCCCCEEEEECCCCCCCC
EVPNTGAGIDNADTIGLAAGYFLTDHIATELVAGIPPRFNLNGKGSLEQFGVLGHAYQWS
CCCCCCCCCCCCCCHHEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCC
PALLLKYYFNDAKAKFRPYVGIGASYIWFTGAKITNTAFERGALGGPTSVQTSNQWAPVL
HHEEEEEECCCCCCCCCCEEECCCEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCEE
NAGFTYNFTDHWFGGLSVSYIPVSLTATLTTQRPTPIGNVTQTSQAKITLNPIVTYLNIG
ECCEEECCCHHCCCCEEEEEEEEEEEEEEEECCCCCCCCCCCCCCEEEEHHEEEEEEECC
YRF
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2336399; 10952301 [H]