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The map label for this gene is tdcF [C]

Identifier: 126453160

GI number: 126453160

Start: 649568

End: 650068

Strand: Direct

Name: tdcF [C]

Synonym: BURPS1106A_0675

Alternate gene names: 126453160

Gene position: 649568-650068 (Clockwise)

Preceding gene: 126454470

Following gene: 126452016

Centisome position: 16.29

GC content: 66.07

Gene sequence:

>501_bases
TTGAAGGATTCGGCGCGCGCGATCGAACGGATGCGCGGGCCGGCGATCGAACGTCGCGCGCCGTCGCGCATCGCGGGCGG
CGCGTGTTGTCAAACGAAACGAAGGAGTGAAACGATGAAGCGATATGGCGTGGGCGAAGCGAAGGGCACGGGCGGCCAGG
TGATGCCGTTCGCGCGCGCGGTCGAGGCCGACGGGTGGCTGTACGTGTCCGGCCAGACGCCGATGGTGAACGGCGAGGTC
GTCGAGGGCGGGATCGTCACGCAGTCGAAGCAGGCGATCGAGAACGTGATCGCGATCCTGAAGGAAGCGGGCTACGGCCT
CGAGCACGTCGTGCGCTGCGGCGTATGGCTCGACGACGCGCGCGATTTCGCGTCGTTCAACAAGGTCTTCATTTCGTACT
TCGGCGAGCACCCGCCCGCCCGCGCATGCGTGCAGTCGAGCATGGTGATCGACTGCAAGGTCGAGGTCGACTGCATCGCG
TACAAGGCGCCGGCGAAGTGA

Upstream 100 bases:

>100_bases
TACCGCGACGGTGCGCCCACGGGCGTGCGCGCGGGCCGCTTCGTCGCGCGCGGCGAACGCGCGCCGGCGACGCCGGGCGA
CGCGTTCTGAGCACGCCCGC

Downstream 100 bases:

>100_bases
CGCGGCGCGCGGTGCGCGAAGCGCGTTCGGTCGGCGGTTGAACGAGAAAACGGGGTCCCGGACGGGGCCCCGTTTTTGGG
GGAGGGCGCTCGGCGCGGTA

Product: putative endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MKDSARAIERMRGPAIERRAPSRIAGGACCQTKRRSETMKRYGVGEAKGTGGQVMPFARAVEADGWLYVSGQTPMVNGEV
VEGGIVTQSKQAIENVIAILKEAGYGLEHVVRCGVWLDDARDFASFNKVFISYFGEHPPARACVQSSMVIDCKVEVDCIA
YKAPAK

Sequences:

>Translated_166_residues
MKDSARAIERMRGPAIERRAPSRIAGGACCQTKRRSETMKRYGVGEAKGTGGQVMPFARAVEADGWLYVSGQTPMVNGEV
VEGGIVTQSKQAIENVIAILKEAGYGLEHVVRCGVWLDDARDFASFNKVFISYFGEHPPARACVQSSMVIDCKVEVDCIA
YKAPAK
>Mature_166_residues
MKDSARAIERMRGPAIERRAPSRIAGGACCQTKRRSETMKRYGVGEAKGTGGQVMPFARAVEADGWLYVSGQTPMVNGEV
VEGGIVTQSKQAIENVIAILKEAGYGLEHVVRCGVWLDDARDFASFNKVFISYFGEHPPARACVQSSMVIDCKVEVDCIA
YKAPAK

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=116, Percent_Identity=35.3448275862069, Blast_Score=80, Evalue=8e-16,
Organism=Escherichia coli, GI87082213, Length=124, Percent_Identity=30.6451612903226, Blast_Score=69, Evalue=1e-13,
Organism=Escherichia coli, GI87082396, Length=113, Percent_Identity=32.7433628318584, Blast_Score=68, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6322138, Length=133, Percent_Identity=31.5789473684211, Blast_Score=86, Evalue=3e-18,
Organism=Saccharomyces cerevisiae, GI6320899, Length=102, Percent_Identity=32.3529411764706, Blast_Score=74, Evalue=1e-14,
Organism=Drosophila melanogaster, GI19921376, Length=111, Percent_Identity=37.8378378378378, Blast_Score=76, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 18031; Mature: 18031

Theoretical pI: Translated: 8.59; Mature: 8.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
7.2 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
7.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDSARAIERMRGPAIERRAPSRIAGGACCQTKRRSETMKRYGVGEAKGTGGQVMPFARA
CCCHHHHHHHHCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
VEADGWLYVSGQTPMVNGEVVEGGIVTQSKQAIENVIAILKEAGYGLEHVVRCGVWLDDA
CCCCCEEEECCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHH
RDFASFNKVFISYFGEHPPARACVQSSMVIDCKVEVDCIAYKAPAK
HHHHHHHHHHHHHHCCCCHHHHHHHCCEEEEEEEEEEEEEECCCCC
>Mature Secondary Structure
MKDSARAIERMRGPAIERRAPSRIAGGACCQTKRRSETMKRYGVGEAKGTGGQVMPFARA
CCCHHHHHHHHCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
VEADGWLYVSGQTPMVNGEVVEGGIVTQSKQAIENVIAILKEAGYGLEHVVRCGVWLDDA
CCCCCEEEECCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHH
RDFASFNKVFISYFGEHPPARACVQSSMVIDCKVEVDCIAYKAPAK
HHHHHHHHHHHHHHCCCCHHHHHHHCCEEEEEEEEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]