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The map label for this gene is rfaC [H]

Identifier: 126453092

GI number: 126453092

Start: 2960112

End: 2961134

Strand: Reverse

Name: rfaC [H]

Synonym: BURPS1106A_3028

Alternate gene names: 126453092

Gene position: 2961134-2960112 (Counterclockwise)

Preceding gene: 126455256

Following gene: 126451742

Centisome position: 74.24

GC content: 70.09

Gene sequence:

>1023_bases
ATGAAACGTATTCTCATTGTGAAGGTCACGTCGCTGGGCGATGTCGTGCAGACGCTGCCCGTCGTCGCGGACCTCCACCG
CGCGTTCCCCGGTGTGCAGGTGGATTGGGCCGTCGACGAGTCGTGCGCCGATGTGGTGCGCTGGAACACCGGCGTGAGCC
GCGTGCTGTGCGCGCCGCTGCGCCGTTTCAAGAAGGCGCGCAGCCCGGCCGACCTGAAGGCGATCGCGGCGTCGATCAGC
GAGCTGCGCGCGCATCGCTACGATGCGGTGATCGATCTTCACGGGGTCTACAAGAGTGCGATCATTTCATTTCTTGCGCG
TGCGCGCCGGCGTTACGGCTACCGCAATCAGGATCTCGGCGAGCTCGGCGCGATGTTCGCGTATAACGGCCGCTTCGGTC
CGCGCCCCGCTTGCGACGCGTGGCACGGCATGCGCGTGAGCGCGGGACAGGCGCTCGGCTACGAGCCTCAGGGCCGCGCC
GATTACCTGCTCGACGTGCCGCCGGAGTCGCGCGAGCCGCATACGGCGCCGCTCGTCGCGCTCGCGGAGCCGGGCGGGCC
GTACGCGCTGTTCTTCCATGCGACCTCGAACGACGACAAGCGCTGGCCGACCGATCGCTGGAGCGCGGTCGCGCGCGAGA
TGCGCGCGCGCGGGCTGCGCGTGCTGCTGCCGTGGGGCAGCGAGCGTGAACGGGAAGAGGCGCAGCGGATCGCCGCGCGC
GCGCCGGGCGCCGTCGTGCTGCCGAGGCTGACGCTCGCCGATGTCGCGCGCAAGATCGATCGCGCCGCGCTCGTGATCGG
TGTCGATACCGGGTTCGTGCACATGGCGCACGCGCTCGAGAAGCCGACCGTCATGATCTTTTGCGCGACGTCGCGCCAGC
ATCTGGGCGTGAGCGGGGCGCCGCACTCGCTGTCGATCGGCGACGAAGGCGCGACGCCGGGCGTCGACGACGTGCTCGGC
GCGATCGAGCACGTTTATCCGACGGGCGCCGTCGAGCAGCCGCGGCGTGTCGCCGCGATGTGA

Upstream 100 bases:

>100_bases
CGACGTTGTGACAAATGTAAATTCTTCGCAATTTGTGGTGTTTGTGACGTTCTGTCTATTTAGAATGCCCAACTAACGAG
TTGGGTACATCCACATAAAA

Downstream 100 bases:

>100_bases
GCGGGCGGCGGCCGCGGCCGCCGCACCGGCACGCTCAGGACATCAATAATTCGAACGCGATCACGGCCGCAATGGCCGCG
AGGTTTGCCACGAGCGCTTC

Product: lipopolysaccharide heptosyltransferase I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 340

Protein sequence:

>340_residues
MKRILIVKVTSLGDVVQTLPVVADLHRAFPGVQVDWAVDESCADVVRWNTGVSRVLCAPLRRFKKARSPADLKAIAASIS
ELRAHRYDAVIDLHGVYKSAIISFLARARRRYGYRNQDLGELGAMFAYNGRFGPRPACDAWHGMRVSAGQALGYEPQGRA
DYLLDVPPESREPHTAPLVALAEPGGPYALFFHATSNDDKRWPTDRWSAVAREMRARGLRVLLPWGSEREREEAQRIAAR
APGAVVLPRLTLADVARKIDRAALVIGVDTGFVHMAHALEKPTVMIFCATSRQHLGVSGAPHSLSIGDEGATPGVDDVLG
AIEHVYPTGAVEQPRRVAAM

Sequences:

>Translated_340_residues
MKRILIVKVTSLGDVVQTLPVVADLHRAFPGVQVDWAVDESCADVVRWNTGVSRVLCAPLRRFKKARSPADLKAIAASIS
ELRAHRYDAVIDLHGVYKSAIISFLARARRRYGYRNQDLGELGAMFAYNGRFGPRPACDAWHGMRVSAGQALGYEPQGRA
DYLLDVPPESREPHTAPLVALAEPGGPYALFFHATSNDDKRWPTDRWSAVAREMRARGLRVLLPWGSEREREEAQRIAAR
APGAVVLPRLTLADVARKIDRAALVIGVDTGFVHMAHALEKPTVMIFCATSRQHLGVSGAPHSLSIGDEGATPGVDDVLG
AIEHVYPTGAVEQPRRVAAM
>Mature_340_residues
MKRILIVKVTSLGDVVQTLPVVADLHRAFPGVQVDWAVDESCADVVRWNTGVSRVLCAPLRRFKKARSPADLKAIAASIS
ELRAHRYDAVIDLHGVYKSAIISFLARARRRYGYRNQDLGELGAMFAYNGRFGPRPACDAWHGMRVSAGQALGYEPQGRA
DYLLDVPPESREPHTAPLVALAEPGGPYALFFHATSNDDKRWPTDRWSAVAREMRARGLRVLLPWGSEREREEAQRIAAR
APGAVVLPRLTLADVARKIDRAALVIGVDTGFVHMAHALEKPTVMIFCATSRQHLGVSGAPHSLSIGDEGATPGVDDVLG
AIEHVYPTGAVEQPRRVAAM

Specific function: Heptose transfer to the lipopolysaccharide core. It transfers the innnermost heptose to [4'-P](3-deoxy-D-manno- octulosonic acid)2-IVA [H]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790051, Length=300, Percent_Identity=36, Blast_Score=174, Evalue=6e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011908 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 37159; Mature: 37159

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRILIVKVTSLGDVVQTLPVVADLHRAFPGVQVDWAVDESCADVVRWNTGVSRVLCAPL
CCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCHHHHHHHHH
RRFKKARSPADLKAIAASISELRAHRYDAVIDLHGVYKSAIISFLARARRRYGYRNQDLG
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHCCCCCCCHH
ELGAMFAYNGRFGPRPACDAWHGMRVSAGQALGYEPQGRADYLLDVPPESREPHTAPLVA
HHHHHEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEE
LAEPGGPYALFFHATSNDDKRWPTDRWSAVAREMRARGLRVLLPWGSEREREEAQRIAAR
EECCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHC
APGAVVLPRLTLADVARKIDRAALVIGVDTGFVHMAHALEKPTVMIFCATSRQHLGVSGA
CCCCEEECCHHHHHHHHHHHHEEEEEECCCCHHHHHHHHCCCEEEEEEECCCCCCCCCCC
PHSLSIGDEGATPGVDDVLGAIEHVYPTGAVEQPRRVAAM
CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHCCC
>Mature Secondary Structure
MKRILIVKVTSLGDVVQTLPVVADLHRAFPGVQVDWAVDESCADVVRWNTGVSRVLCAPL
CCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCHHHHHHHHH
RRFKKARSPADLKAIAASISELRAHRYDAVIDLHGVYKSAIISFLARARRRYGYRNQDLG
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHCCCCCCCHH
ELGAMFAYNGRFGPRPACDAWHGMRVSAGQALGYEPQGRADYLLDVPPESREPHTAPLVA
HHHHHEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEE
LAEPGGPYALFFHATSNDDKRWPTDRWSAVAREMRARGLRVLLPWGSEREREEAQRIAAR
EECCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHC
APGAVVLPRLTLADVARKIDRAALVIGVDTGFVHMAHALEKPTVMIFCATSRQHLGVSGA
CCCCEEECCHHHHHHHHHHHHEEEEEECCCCHHHHHHHHCCCEEEEEEECCCCCCCCCCC
PHSLSIGDEGATPGVDDVLGAIEHVYPTGAVEQPRRVAAM
CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Transferases; Glycosyltransferases [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8478319; 8041620; 9278503; 1624462 [H]