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The map label for this gene is ompA [H]

Identifier: 126453039

GI number: 126453039

Start: 3552614

End: 3553546

Strand: Direct

Name: ompA [H]

Synonym: BURPS1106A_3652

Alternate gene names: 126453039

Gene position: 3552614-3553546 (Clockwise)

Preceding gene: 126453923

Following gene: 126455022

Centisome position: 89.07

GC content: 70.31

Gene sequence:

>933_bases
ATGACGAAGCCCCGCCTGCCCCTGCTGCGCGCCCGCCGCTTCGCGCTCGCGCTCGCCGCGCTCGCGCTCGGCGGCGCCGC
GCGCGCCGACAACGTCGGCCCCGCCACCGTCACGCCGATCGACGCAGGCGGCGTGCCCGTGAAATCGGTGCCGCTCGCCG
CGCCCGTGACGGCCGCGCCGGTCGCCGCGACGGCCGGCGCGGGCGCGACCGTGTCGTCGCCGCCGCCCGCGAACGCGACG
CCGGGCCAGGTCGTCGCCGGCGGCAAGGTTGCCGACGAAGCGACGAAGGCCGCCGTGCTGCAGCGCCTGCGCGACACGTA
CGGCGCCGCGAACGTCGTCGACCAGATCGAAATCGGCAACGTCGCGACGCCGCCGAACTGGTCCGCGAACGTCCAGAAGC
TGATCGGCCCGCAACTGAAACAGATCAGCAAAGGACAGCTGAAGATCGACGGCACGCAGATCGACGTGAAGGGCGAAGTG
CACAACGAGGCGCAGCGCCAGCAGCTCGCGAGCGACATGGCGAACGCGCTGAATCCGACCTACACGATCAAGAACGGGCT
GCGCGTGAGCGCGTCCGAGCAGGGCCTGCTCGACCAGACGCTCGCGAACCGCACGATCGAATTCGAAACCGGCAGCGCGA
CGCTCACGCCGCAAGGCCGCGCGATTCTCGACCAGATGGCGGGCGCGCTCGCGAAGATGTCGAACCGAACGGTCGAGATC
ATCGGGCACACCGACAACTCGGGCAACCGCACGTCGAACATCGCGCTCAGCCAGGCGCGCGCGGATGCGGTCAAGGGATA
TCTGGTGACGAAGGGCATCGCGTCGCAGCAACTGACGACGACGGGCGTCGGCCCCGATCAGCCGATCGCGCCGAACGATT
CGGCCGACGGTCGCGCACGCAATCGCCGGATCGAATTCCGCGCGGGACAGTAA

Upstream 100 bases:

>100_bases
CATGGGATCAGCAAGCTCGTCAGTTATCTCGATCAACCGCAACTGTCGCTTCGCGTGTGCATCGACACGTTCCGCGAAGC
ATTCGCCGGAGCGTGACGAG

Downstream 100 bases:

>100_bases
GCGGCGCGAACGGCGGGCGGCGCGCCCGCCGCCCGCCGCCCGCCGACGCGGTCCACGAATGATGTCGTCGACATCGGCGA
TATCGGCGCCCTCGCCGCGC

Product: ompA family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 309

Protein sequence:

>310_residues
MTKPRLPLLRARRFALALAALALGGAARADNVGPATVTPIDAGGVPVKSVPLAAPVTAAPVAATAGAGATVSSPPPANAT
PGQVVAGGKVADEATKAAVLQRLRDTYGAANVVDQIEIGNVATPPNWSANVQKLIGPQLKQISKGQLKIDGTQIDVKGEV
HNEAQRQQLASDMANALNPTYTIKNGLRVSASEQGLLDQTLANRTIEFETGSATLTPQGRAILDQMAGALAKMSNRTVEI
IGHTDNSGNRTSNIALSQARADAVKGYLVTKGIASQQLTTTGVGPDQPIAPNDSADGRARNRRIEFRAGQ

Sequences:

>Translated_310_residues
MTKPRLPLLRARRFALALAALALGGAARADNVGPATVTPIDAGGVPVKSVPLAAPVTAAPVAATAGAGATVSSPPPANAT
PGQVVAGGKVADEATKAAVLQRLRDTYGAANVVDQIEIGNVATPPNWSANVQKLIGPQLKQISKGQLKIDGTQIDVKGEV
HNEAQRQQLASDMANALNPTYTIKNGLRVSASEQGLLDQTLANRTIEFETGSATLTPQGRAILDQMAGALAKMSNRTVEI
IGHTDNSGNRTSNIALSQARADAVKGYLVTKGIASQQLTTTGVGPDQPIAPNDSADGRARNRRIEFRAGQ
>Mature_309_residues
TKPRLPLLRARRFALALAALALGGAARADNVGPATVTPIDAGGVPVKSVPLAAPVTAAPVAATAGAGATVSSPPPANATP
GQVVAGGKVADEATKAAVLQRLRDTYGAANVVDQIEIGNVATPPNWSANVQKLIGPQLKQISKGQLKIDGTQIDVKGEVH
NEAQRQQLASDMANALNPTYTIKNGLRVSASEQGLLDQTLANRTIEFETGSATLTPQGRAILDQMAGALAKMSNRTVEII
GHTDNSGNRTSNIALSQARADAVKGYLVTKGIASQQLTTTGVGPDQPIAPNDSADGRARNRRIEFRAGQ

Specific function: Structural protein that may protect the integrity of the bacterium [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=101, Percent_Identity=41.5841584158416, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1787191, Length=111, Percent_Identity=31.5315315315315, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 31934; Mature: 31803

Theoretical pI: Translated: 10.54; Mature: 10.54

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKPRLPLLRARRFALALAALALGGAARADNVGPATVTPIDAGGVPVKSVPLAAPVTAAP
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECEECCCCCCCCCCCCCCCCCCCC
VAATAGAGATVSSPPPANATPGQVVAGGKVADEATKAAVLQRLRDTYGAANVVDQIEIGN
HHHCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCHHHHHHHEECCC
VATPPNWSANVQKLIGPQLKQISKGQLKIDGTQIDVKGEVHNEAQRQQLASDMANALNPT
CCCCCCCCCHHHHHHCHHHHHHCCCCEEECCEEEEEECCHHHHHHHHHHHHHHHHHCCCC
YTIKNGLRVSASEQGLLDQTLANRTIEFETGSATLTPQGRAILDQMAGALAKMSNRTVEI
EEECCCEEECCCCCCHHHHHHHCCEEEEECCCEEECCCHHHHHHHHHHHHHHHCCCEEEE
IGHTDNSGNRTSNIALSQARADAVKGYLVTKGIASQQLTTTGVGPDQPIAPNDSADGRAR
EEECCCCCCCCCCEEHHHHHHHHHHCEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCC
NRRIEFRAGQ
CCEEEEECCC
>Mature Secondary Structure 
TKPRLPLLRARRFALALAALALGGAARADNVGPATVTPIDAGGVPVKSVPLAAPVTAAP
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECEECCCCCCCCCCCCCCCCCCCC
VAATAGAGATVSSPPPANATPGQVVAGGKVADEATKAAVLQRLRDTYGAANVVDQIEIGN
HHHCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCHHHHHHHEECCC
VATPPNWSANVQKLIGPQLKQISKGQLKIDGTQIDVKGEVHNEAQRQQLASDMANALNPT
CCCCCCCCCHHHHHHCHHHHHHCCCCEEECCEEEEEECCHHHHHHHHHHHHHHHHHCCCC
YTIKNGLRVSASEQGLLDQTLANRTIEFETGSATLTPQGRAILDQMAGALAKMSNRTVEI
EEECCCEEECCCCCCHHHHHHHCCEEEEECCCEEECCCHHHHHHHHHHHHHHHCCCEEEE
IGHTDNSGNRTSNIALSQARADAVKGYLVTKGIASQQLTTTGVGPDQPIAPNDSADGRAR
EEECCCCCCCCCCEEHHHHHHHHHHCEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCC
NRRIEFRAGQ
CCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1447140 [H]