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The map label for this gene is ydfH [H]

Identifier: 126452872

GI number: 126452872

Start: 2394138

End: 2394833

Strand: Reverse

Name: ydfH [H]

Synonym: BURPS1106A_2435

Alternate gene names: 126452872

Gene position: 2394833-2394138 (Counterclockwise)

Preceding gene: 126451817

Following gene: 126452220

Centisome position: 60.04

GC content: 68.1

Gene sequence:

>696_bases
ATGACGAAGAAAGATGCCGCGCCGACGGGCGCGAGTGCCGAGTCGATCGCCGAACGGATCCGCACCGCGATCCTCGAGCA
CCGGCTCGCGCCCGGCACGAAGCTGACGGAAGCGCAGTTGTGCGAAGTGTTCGGCGTAAAGCGCGGCGCGATCCGGCAGG
CGCTCGCGCTCCTCGCGACCGACCGGCTCGTCGATCTCGAGCCGAACCGCGGCGCGTTCGTCGCGAGTCCGACACTGCAG
GACGTGCACGAAGTGTTCGAGATGCGGCGCATCGTCGAGCTCGCGGTGATGGAGCGGCTCGCGACGGGACCGGGCGCGAA
GCGCCTGAAGGGCGTCGCGGCGATGATCGACAAGGAGCGCCATGCGTTCGAGCGGCGCGATTTTCCGGCGTGGATCCGGC
TGTCCGGCGAGTTCCATACCGCGCTCGCGGCGCTTACCGGCAACACGGTGCTGCGCGATTGCCTGGGCGGGCTCGTCGCG
CGCTCGACACTGATGTCGGCGCTGTATGAATCGCACGGGCGCAGCCCGTGTTCGTTCGACGACCATGCGCAGATTCTCGC
CGCGCTCGAAGCGGGCGATGCGAAGCGCGCGGCGCAATTGATGGCGCATCATTTGCAGCACGTCGAACTGAAGATGCTCG
ATCGGCCGGCGCAAGGCGCGGTCGATCTGCGCGAGGTGTTCGGCGATCCGGGCTGA

Upstream 100 bases:

>100_bases
GAAGCGCGCCTGCGCACCTCGATTGTGCAAAATAATGGAGCAAAATTGTTGACAATATTTATGTCCAATCTACGATGCAG
TCCATAACGAGATGCGAACC

Downstream 100 bases:

>100_bases
CGGCCGGCCGCACGCCGAACGCGCTCACTGAACTGACGAAATGCCGGGCGGCCGCGTGTGCGGACGCCTCGCCAGGGCGG
CATCGGGCGATCCCGTTCGA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MTKKDAAPTGASAESIAERIRTAILEHRLAPGTKLTEAQLCEVFGVKRGAIRQALALLATDRLVDLEPNRGAFVASPTLQ
DVHEVFEMRRIVELAVMERLATGPGAKRLKGVAAMIDKERHAFERRDFPAWIRLSGEFHTALAALTGNTVLRDCLGGLVA
RSTLMSALYESHGRSPCSFDDHAQILAALEAGDAKRAAQLMAHHLQHVELKMLDRPAQGAVDLREVFGDPG

Sequences:

>Translated_231_residues
MTKKDAAPTGASAESIAERIRTAILEHRLAPGTKLTEAQLCEVFGVKRGAIRQALALLATDRLVDLEPNRGAFVASPTLQ
DVHEVFEMRRIVELAVMERLATGPGAKRLKGVAAMIDKERHAFERRDFPAWIRLSGEFHTALAALTGNTVLRDCLGGLVA
RSTLMSALYESHGRSPCSFDDHAQILAALEAGDAKRAAQLMAHHLQHVELKMLDRPAQGAVDLREVFGDPG
>Mature_230_residues
TKKDAAPTGASAESIAERIRTAILEHRLAPGTKLTEAQLCEVFGVKRGAIRQALALLATDRLVDLEPNRGAFVASPTLQD
VHEVFEMRRIVELAVMERLATGPGAKRLKGVAAMIDKERHAFERRDFPAWIRLSGEFHTALAALTGNTVLRDCLGGLVAR
STLMSALYESHGRSPCSFDDHAQILAALEAGDAKRAAQLMAHHLQHVELKMLDRPAQGAVDLREVFGDPG

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=202, Percent_Identity=25.7425742574257, Blast_Score=76, Evalue=2e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25118; Mature: 24987

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKKDAAPTGASAESIAERIRTAILEHRLAPGTKLTEAQLCEVFGVKRGAIRQALALLAT
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHH
DRLVDLEPNRGAFVASPTLQDVHEVFEMRRIVELAVMERLATGPGAKRLKGVAAMIDKER
HHHEECCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
HAFERRDFPAWIRLSGEFHTALAALTGNTVLRDCLGGLVARSTLMSALYESHGRSPCSFD
HHHHHCCCCEEEEECCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
DHAQILAALEAGDAKRAAQLMAHHLQHVELKMLDRPAQGAVDLREVFGDPG
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCC
>Mature Secondary Structure 
TKKDAAPTGASAESIAERIRTAILEHRLAPGTKLTEAQLCEVFGVKRGAIRQALALLAT
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHH
DRLVDLEPNRGAFVASPTLQDVHEVFEMRRIVELAVMERLATGPGAKRLKGVAAMIDKER
HHHEECCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
HAFERRDFPAWIRLSGEFHTALAALTGNTVLRDCLGGLVARSTLMSALYESHGRSPCSFD
HHHHHCCCCEEEEECCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
DHAQILAALEAGDAKRAAQLMAHHLQHVELKMLDRPAQGAVDLREVFGDPG
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]