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The map label for this gene is tse [H]

Identifier: 126452850

GI number: 126452850

Start: 3840687

End: 3842708

Strand: Reverse

Name: tse [H]

Synonym: BURPS1106A_3934

Alternate gene names: 126452850

Gene position: 3842708-3840687 (Counterclockwise)

Preceding gene: 126451858

Following gene: 126451760

Centisome position: 96.35

GC content: 71.71

Gene sequence:

>2022_bases
ATGCTGCACAACTGGTCGATCCGCACGACGCTGACGGCCGTCGGATTCATGCTGGTGCTCGTCGCCGCGCTGGTCGGCGG
GCTCGGGCTGTATGCGCTCAATCACGCGAGCCGCTCGCTCGACGCGATCGCGCACGGCGATCTGCCGACGATCCACACGC
TCGACGACGCGTCGTCCTATCTGCTGCGCTCGCGCGTCGCGCTCGACCGCTTCAAGACGCTGTCCGAGGCGGGCAACGCC
GACGAGGCGAAGAAAGTGCTCGCGCGCGCGCAGGAGCTCTACGCGAAGTCGACGCAGAACTGGCAGGCGTACATGGCCGC
GTCGAAGGAGGGCATCGATTCAGCGCTGACCGACGAGCTCGCCGCGCGCTACGCGACGCTCGCGAAGGAAGGCGTCGAGC
CGGAGTTCGCCGCCGCGGGCGCGGGCGACCTCGCCGCGTATCACGCGATCGCCGACACGAAGATCAGCCCGATGTTCGTC
GCGTACGACAAGGCGGCCGCCGCGGTGATCGCCGCGTATTCGAAGCGCGCGGAATCGCGCTTCGACGCGACGCAGGCGCG
CATCTCGCTGATGATCGCGCTGATCGCGGCGGGCATCGCCGCCGCGTTCCTGATGGTGATCGGCATTCGCTTCGCGCTGC
GCGGGCTCATCGTGCAGCCGCTGAACGTCGCGATCGCGCAGTTCGAGCGGATCGCGGCGGGCGACCTCACGCAGGCGACG
CGCATCGCCGGCAACAACGAAATCGGCCGGCTTTTCCAGGGCATCGGCCGGATGCAGACGGCCGTCGGCGACATGGTGAA
GGCCGTGCATCGCGGCGCGGAAGCGGTCGACCTCGGCGCGCGCGAGATTTCGAGCGGCAACGCGGACCTGTCCGCGCGCA
CCGAATCGCAGGCGGCCTCGCTGCAGGAAACCGCATCGAGCATGGAGCAACTGACGGGCACGGTGCGCCAGAACGCGGAA
AACGCGCGGCAGGCGAGCCAGCTCGCGGTCAACGCGTCCGACATCGCGACGCAGGGCGGCGAGGTCGTCGGCCAGGTCGT
CACGACGATGCAGGACATCGCGACGAGCTCGTCGAAGGTCGCCGACATCATCGGCACGATCGAGGGGATCGCGTTCCAGA
CCAACATCCTCGCGCTGAACGCGGCCGTCGAGGCGGCGCGCGCGGGCGAACAGGGCCGCGGCTTCGCGGTGGTCGCGGGC
GAGGTGCGCTCGCTCGCGCAGAGAAGCGCGACGGCCGCGAAGGAAATCAAGCAGTTGATCGGCGACTCCGCGCACAAGGT
GCAAAGCGGCTCCGCGCTCGTCGAGCGCGCGGGCGCGACGATGGCCGAGATCGTCCAGGCGGTGCGGCGCGTGACCGACA
TCATGGGCGAGATCAGCGCGGCGTCCGAAGAGCAGTCGACGGGCATCGTCCAGGTGAACCGCGCGGTCAGCCAGATGGAC
GCCGTCACGCAGCAGAACGCGGCACTCGTCGAGCAAGCGGCGGCCGCGGCCGCGTCGCTCGAGGATCAGACGCGGCAGAT
GAAGCAGATCGTCTCGGCATGGCGCGTCGAAGGCGCAAGCGCGGCGGCGACGCCGGCCGCGTCGACGTCGGCGGCCGCGA
GCGTGCGTTCGAACGTGAACGCCCGTGCGAGCACGTCGAGCGAGCCGCATGCGGTCGCTCATGCCGTCGCATCCGCGACG
CATGCCGCGGACGCGACGGCCGGCGGAGCCGGATCGCCGCGTTCGCCCGCCGCCGCGCACGCTTCGCACGGCGAGCAGCG
CGGGACGCACGCCGCGCCGTATGGCGCGAAGCCCGCCGCCGCGCCGAAGCCCGCCGCCGCGCCGGCCGCGGCCGGCTATG
CACCGAAGCTCGCGAAGCCGGGCGCTGCCGCGCGCCCCGCGGCGAGCCCGGCCGACGCCGCCGCGCCGCAAGCCGCCCCC
GCTCCCGCGTCCTCCTTCGCACTCAAGCGCCCGGCGCTGTCGGGCGAGCCGAAGCCCGCGGCCGCGTCGGCATCCTCCGA
CGACGACTGGGAAACCTTCTAA

Upstream 100 bases:

>100_bases
GACATCGAGAAGCTGATGACGAGCAAGGAGATGGCGCTGATCGAGACGCTCGGCGCATAAGCGGGCGCGACGCACGCAAC
GCAACTACGGGGAGCTGACG

Downstream 100 bases:

>100_bases
GCCATGATGCCCGCACGCGCCGCCTCTCGTCTCGACGCACCCGAACCGCAAGAACGGTCGGGCGACGCTGCGCGGGACTT
CGAATTCACGTCCGCCGATT

Product: methyl-accepting chemotaxis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 673; Mature: 673

Protein sequence:

>673_residues
MLHNWSIRTTLTAVGFMLVLVAALVGGLGLYALNHASRSLDAIAHGDLPTIHTLDDASSYLLRSRVALDRFKTLSEAGNA
DEAKKVLARAQELYAKSTQNWQAYMAASKEGIDSALTDELAARYATLAKEGVEPEFAAAGAGDLAAYHAIADTKISPMFV
AYDKAAAAVIAAYSKRAESRFDATQARISLMIALIAAGIAAAFLMVIGIRFALRGLIVQPLNVAIAQFERIAAGDLTQAT
RIAGNNEIGRLFQGIGRMQTAVGDMVKAVHRGAEAVDLGAREISSGNADLSARTESQAASLQETASSMEQLTGTVRQNAE
NARQASQLAVNASDIATQGGEVVGQVVTTMQDIATSSSKVADIIGTIEGIAFQTNILALNAAVEAARAGEQGRGFAVVAG
EVRSLAQRSATAAKEIKQLIGDSAHKVQSGSALVERAGATMAEIVQAVRRVTDIMGEISAASEEQSTGIVQVNRAVSQMD
AVTQQNAALVEQAAAAAASLEDQTRQMKQIVSAWRVEGASAAATPAASTSAAASVRSNVNARASTSSEPHAVAHAVASAT
HAADATAGGAGSPRSPAAAHASHGEQRGTHAAPYGAKPAAAPKPAAAPAAAGYAPKLAKPGAAARPAASPADAAAPQAAP
APASSFALKRPALSGEPKPAAASASSDDDWETF

Sequences:

>Translated_673_residues
MLHNWSIRTTLTAVGFMLVLVAALVGGLGLYALNHASRSLDAIAHGDLPTIHTLDDASSYLLRSRVALDRFKTLSEAGNA
DEAKKVLARAQELYAKSTQNWQAYMAASKEGIDSALTDELAARYATLAKEGVEPEFAAAGAGDLAAYHAIADTKISPMFV
AYDKAAAAVIAAYSKRAESRFDATQARISLMIALIAAGIAAAFLMVIGIRFALRGLIVQPLNVAIAQFERIAAGDLTQAT
RIAGNNEIGRLFQGIGRMQTAVGDMVKAVHRGAEAVDLGAREISSGNADLSARTESQAASLQETASSMEQLTGTVRQNAE
NARQASQLAVNASDIATQGGEVVGQVVTTMQDIATSSSKVADIIGTIEGIAFQTNILALNAAVEAARAGEQGRGFAVVAG
EVRSLAQRSATAAKEIKQLIGDSAHKVQSGSALVERAGATMAEIVQAVRRVTDIMGEISAASEEQSTGIVQVNRAVSQMD
AVTQQNAALVEQAAAAAASLEDQTRQMKQIVSAWRVEGASAAATPAASTSAAASVRSNVNARASTSSEPHAVAHAVASAT
HAADATAGGAGSPRSPAAAHASHGEQRGTHAAPYGAKPAAAPKPAAAPAAAGYAPKLAKPGAAARPAASPADAAAPQAAP
APASSFALKRPALSGEPKPAAASASSDDDWETF
>Mature_673_residues
MLHNWSIRTTLTAVGFMLVLVAALVGGLGLYALNHASRSLDAIAHGDLPTIHTLDDASSYLLRSRVALDRFKTLSEAGNA
DEAKKVLARAQELYAKSTQNWQAYMAASKEGIDSALTDELAARYATLAKEGVEPEFAAAGAGDLAAYHAIADTKISPMFV
AYDKAAAAVIAAYSKRAESRFDATQARISLMIALIAAGIAAAFLMVIGIRFALRGLIVQPLNVAIAQFERIAAGDLTQAT
RIAGNNEIGRLFQGIGRMQTAVGDMVKAVHRGAEAVDLGAREISSGNADLSARTESQAASLQETASSMEQLTGTVRQNAE
NARQASQLAVNASDIATQGGEVVGQVVTTMQDIATSSSKVADIIGTIEGIAFQTNILALNAAVEAARAGEQGRGFAVVAG
EVRSLAQRSATAAKEIKQLIGDSAHKVQSGSALVERAGATMAEIVQAVRRVTDIMGEISAASEEQSTGIVQVNRAVSQMD
AVTQQNAALVEQAAAAAASLEDQTRQMKQIVSAWRVEGASAAATPAASTSAAASVRSNVNARASTSSEPHAVAHAVASAT
HAADATAGGAGSPRSPAAAHASHGEQRGTHAAPYGAKPAAAPKPAAAPAAAGYAPKLAKPGAAARPAASPADAAAPQAAP
APASSFALKRPALSGEPKPAAASASSDDDWETF

Specific function: Chemotactic-signal transducers respond to changes in the concentration of attractants and repellents in the environment, transduce a signal from the outside to the inside of the cell, and facilitate sensory adaptation through the variation of the level of

COG id: COG0840

COG function: function code NT; Methyl-accepting chemotaxis protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI1787690, Length=514, Percent_Identity=44.3579766536965, Blast_Score=344, Evalue=1e-95,
Organism=Escherichia coli, GI1788195, Length=315, Percent_Identity=60.6349206349206, Blast_Score=334, Evalue=1e-92,
Organism=Escherichia coli, GI2367378, Length=508, Percent_Identity=44.0944881889764, Blast_Score=332, Evalue=4e-92,
Organism=Escherichia coli, GI1788194, Length=528, Percent_Identity=41.6666666666667, Blast_Score=324, Evalue=1e-89,
Organism=Escherichia coli, GI1789453, Length=325, Percent_Identity=38.4615384615385, Blast_Score=219, Evalue=5e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR003122
- InterPro:   IPR004091
- InterPro:   IPR004089
- InterPro:   IPR003660 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF02203 TarH [H]

EC number: NA

Molecular weight: Translated: 68701; Mature: 68701

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLHNWSIRTTLTAVGFMLVLVAALVGGLGLYALNHASRSLDAIAHGDLPTIHTLDDASSY
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHH
LLRSRVALDRFKTLSEAGNADEAKKVLARAQELYAKSTQNWQAYMAASKEGIDSALTDEL
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHH
AARYATLAKEGVEPEFAAAGAGDLAAYHAIADTKISPMFVAYDKAAAAVIAAYSKRAESR
HHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHH
FDATQARISLMIALIAAGIAAAFLMVIGIRFALRGLIVQPLNVAIAQFERIAAGDLTQAT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
RIAGNNEIGRLFQGIGRMQTAVGDMVKAVHRGAEAVDLGAREISSGNADLSARTESQAAS
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHCCCCCCCCCCHHHHHHH
LQETASSMEQLTGTVRQNAENARQASQLAVNASDIATQGGEVVGQVVTTMQDIATSSSKV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHCCHHHH
ADIIGTIEGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSATAAKEIKQLI
HHHHHHHHHHHEEHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHH
GDSAHKVQSGSALVERAGATMAEIVQAVRRVTDIMGEISAASEEQSTGIVQVNRAVSQMD
CCHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHH
AVTQQNAALVEQAAAAAASLEDQTRQMKQIVSAWRVEGASAAATPAASTSAAASVRSNVN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCC
ARASTSSEPHAVAHAVASATHAADATAGGAGSPRSPAAAHASHGEQRGTHAAPYGAKPAA
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCHHCCCCCCCCCCCCCC
APKPAAAPAAAGYAPKLAKPGAAARPAASPADAAAPQAAPAPASSFALKRPALSGEPKPA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCHHHHHCCCCCCCCCCCC
AASASSDDDWETF
CCCCCCCCCCCCC
>Mature Secondary Structure
MLHNWSIRTTLTAVGFMLVLVAALVGGLGLYALNHASRSLDAIAHGDLPTIHTLDDASSY
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHH
LLRSRVALDRFKTLSEAGNADEAKKVLARAQELYAKSTQNWQAYMAASKEGIDSALTDEL
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHH
AARYATLAKEGVEPEFAAAGAGDLAAYHAIADTKISPMFVAYDKAAAAVIAAYSKRAESR
HHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHH
FDATQARISLMIALIAAGIAAAFLMVIGIRFALRGLIVQPLNVAIAQFERIAAGDLTQAT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
RIAGNNEIGRLFQGIGRMQTAVGDMVKAVHRGAEAVDLGAREISSGNADLSARTESQAAS
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHCCCCCCCCCCHHHHHHH
LQETASSMEQLTGTVRQNAENARQASQLAVNASDIATQGGEVVGQVVTTMQDIATSSSKV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHCCHHHH
ADIIGTIEGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSATAAKEIKQLI
HHHHHHHHHHHEEHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHH
GDSAHKVQSGSALVERAGATMAEIVQAVRRVTDIMGEISAASEEQSTGIVQVNRAVSQMD
CCHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHH
AVTQQNAALVEQAAAAAASLEDQTRQMKQIVSAWRVEGASAAATPAASTSAAASVRSNVN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCC
ARASTSSEPHAVAHAVASATHAADATAGGAGSPRSPAAAHASHGEQRGTHAAPYGAKPAA
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCHHCCCCCCCCCCCCCC
APKPAAAPAAAGYAPKLAKPGAAARPAASPADAAAPQAAPAPASSFALKRPALSGEPKPA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCHHHHHCCCCCCCCCCCC
AASASSDDDWETF
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2496104 [H]