Click here to switch to the map view.

The map label for this gene is yjcC [H]

Identifier: 126452749

GI number: 126452749

Start: 365222

End: 366616

Strand: Direct

Name: yjcC [H]

Synonym: BURPS1106A_0400

Alternate gene names: 126452749

Gene position: 365222-366616 (Clockwise)

Preceding gene: 126454069

Following gene: 126453774

Centisome position: 9.16

GC content: 68.89

Gene sequence:

>1395_bases
TTGAGGCTTGTCGACAACTACGATCGAACAACCGAGGACCACGATGAAAACCCGCGAGTCGCATGTTTCGCCTGCCGACG
TTTTCGTCATCAGGAGGGCCGCCGCATGACCATTGCCCAGCAGGAGCGCCCTGTCGCCGCGTCGCCGTACCGCTTCGAGG
CGGAGATGACGTCCGGCCTCGAGCGCGTCGCCGCGCATCACCACGACCTCACGCTTACGTCGGTGTTCCAGCCGATCTTC
AGCCTGTCTCATATGCGCGCGGTCGGCTACGAGGCGTTGCTGCGCGCGCACGATGCGCTCGACCGGCCCGTTTCGCCGCT
CGACGTGTTCGGCGAAGCCGCGCGCCACGGCGAGGCGACACAGGTCGATCGCCTCGCGCAGGCGCTGCATCTGGAGAACT
TCGCGCGCTTCGGCGCCGAGCGTGAATGGCTGTTCCTCAACGTGCACCCCGGCGTGCTCACCGATCCGTTTCAGGCCGCC
GCGCTGTTCGCGAACCTGAGGCGGCTCGACATTGCGCCGCGGCGCATCGTGCTCGAAGTGCTCGAGCAGCGCGCCGAGGA
CATCGAACGGCTCGCCGACGCGGTGCGTGAGTTCCGCGAGCACGGCTTCCTGATCGCGCTCGACGATTTCGGCGCCGGTC
ATTCGAACATCGAACGAATCTGGCAACTGAACCCGGACATCGTGAAGCTCGACCGGATCATGCTGTCGCACGCGCAGCAC
CGCGCGGGGCTCACGGCGATCCTGCACGGGCTCGTCACGCTGCTGCACGAGGCGGGCAAGCTCGTGCTGATCGAGGGGAT
CGAAACCGAGCACGAGGCGCAGATCGCGCTCGCGTGCGACGCGGATTTCGTGCAAGGCCATTTCTTCGGGCGACCGGCGC
CGGGGCTGCCCGACAGCGCGGCGGCGTCCACGTGCATCGGCGAGCTGACCGAGCGCTATCGTCAGCAGACCGAAGCGGCC
GAGCGGCGCGACGCACAGCGGCTCGCGCCGTACCAGCGTGCGTTCGAGCGCGCGGCGGAACGCCTCGCGGCGGGCGAGCC
GCTCGACGAGGTCTGCTGGAATTTCCTCGCGCTCGATCACGCGGCGCGCTGCTTCCTGCTCGACGAGCGCGGGCGGCAGG
CGGGCCGCAACGTCGTGCTGCGCGCGGACCGCGCATCGCACGAGACGCGCTTTCTGCCGCTGGCCGACGCGCAGGGCGCG
AACTGGCTGAGGCGCCCGTATTTCCGGGCGGCGATCGCCGAGCCCGGGCGCGTGCAGGCGACGCGGCCGTATCTGTCGAT
CAACGAGGCGCTGCCTTGCGTGACGCTGTCGATCGCGGTGCGCGTGAACGATGCGCTATGCGTGCTCTGCGGCGATATCG
ACTGGATCGATGCGGACGCAGCGGCCGGCGCGTAG

Upstream 100 bases:

>100_bases
ATCCCCATCGGCATGCACGCGCGGCGCGCCGCGCGCGTGGCGCCCGCGCCCGGGAGCAGGCGGCGCGGCGGGGCGCCATG
CGCGTGAGCACGGAGCTTGC

Downstream 100 bases:

>100_bases
CGGCGGGGCGCGGGGATTGCCCGCGCGGGGCGCGGTTGCGCGGCGTGGCGGCCGCCGCCGCGCGATGGATGAACGCCCGC
CATCCGGGCGGAGGGTTTCG

Product: cyclic diguanylate phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 464; Mature: 464

Protein sequence:

>464_residues
MRLVDNYDRTTEDHDENPRVACFACRRFRHQEGRRMTIAQQERPVAASPYRFEAEMTSGLERVAAHHHDLTLTSVFQPIF
SLSHMRAVGYEALLRAHDALDRPVSPLDVFGEAARHGEATQVDRLAQALHLENFARFGAEREWLFLNVHPGVLTDPFQAA
ALFANLRRLDIAPRRIVLEVLEQRAEDIERLADAVREFREHGFLIALDDFGAGHSNIERIWQLNPDIVKLDRIMLSHAQH
RAGLTAILHGLVTLLHEAGKLVLIEGIETEHEAQIALACDADFVQGHFFGRPAPGLPDSAAASTCIGELTERYRQQTEAA
ERRDAQRLAPYQRAFERAAERLAAGEPLDEVCWNFLALDHAARCFLLDERGRQAGRNVVLRADRASHETRFLPLADAQGA
NWLRRPYFRAAIAEPGRVQATRPYLSINEALPCVTLSIAVRVNDALCVLCGDIDWIDADAAAGA

Sequences:

>Translated_464_residues
MRLVDNYDRTTEDHDENPRVACFACRRFRHQEGRRMTIAQQERPVAASPYRFEAEMTSGLERVAAHHHDLTLTSVFQPIF
SLSHMRAVGYEALLRAHDALDRPVSPLDVFGEAARHGEATQVDRLAQALHLENFARFGAEREWLFLNVHPGVLTDPFQAA
ALFANLRRLDIAPRRIVLEVLEQRAEDIERLADAVREFREHGFLIALDDFGAGHSNIERIWQLNPDIVKLDRIMLSHAQH
RAGLTAILHGLVTLLHEAGKLVLIEGIETEHEAQIALACDADFVQGHFFGRPAPGLPDSAAASTCIGELTERYRQQTEAA
ERRDAQRLAPYQRAFERAAERLAAGEPLDEVCWNFLALDHAARCFLLDERGRQAGRNVVLRADRASHETRFLPLADAQGA
NWLRRPYFRAAIAEPGRVQATRPYLSINEALPCVTLSIAVRVNDALCVLCGDIDWIDADAAAGA
>Mature_464_residues
MRLVDNYDRTTEDHDENPRVACFACRRFRHQEGRRMTIAQQERPVAASPYRFEAEMTSGLERVAAHHHDLTLTSVFQPIF
SLSHMRAVGYEALLRAHDALDRPVSPLDVFGEAARHGEATQVDRLAQALHLENFARFGAEREWLFLNVHPGVLTDPFQAA
ALFANLRRLDIAPRRIVLEVLEQRAEDIERLADAVREFREHGFLIALDDFGAGHSNIERIWQLNPDIVKLDRIMLSHAQH
RAGLTAILHGLVTLLHEAGKLVLIEGIETEHEAQIALACDADFVQGHFFGRPAPGLPDSAAASTCIGELTERYRQQTEAA
ERRDAQRLAPYQRAFERAAERLAAGEPLDEVCWNFLALDHAARCFLLDERGRQAGRNVVLRADRASHETRFLPLADAQGA
NWLRRPYFRAAIAEPGRVQATRPYLSINEALPCVTLSIAVRVNDALCVLCGDIDWIDADAAAGA

Specific function: Overexpression reduces biofilm formation [H]

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 EAL domain [H]

Homologues:

Organism=Escherichia coli, GI1790496, Length=235, Percent_Identity=24.6808510638298, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87082096, Length=151, Percent_Identity=29.8013245033113, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787055, Length=232, Percent_Identity=25.4310344827586, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI87081743, Length=245, Percent_Identity=26.1224489795918, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1788849, Length=251, Percent_Identity=25.4980079681275, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87081921, Length=233, Percent_Identity=24.4635193133047, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI1788502, Length=233, Percent_Identity=27.0386266094421, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001633 [H]

Pfam domain/function: PF00563 EAL [H]

EC number: NA

Molecular weight: Translated: 52018; Mature: 52018

Theoretical pI: Translated: 6.08; Mature: 6.08

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLVDNYDRTTEDHDENPRVACFACRRFRHQEGRRMTIAQQERPVAASPYRFEAEMTSGL
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEHHCCCCCCCCCCEEHHHHHHHH
ERVAAHHHDLTLTSVFQPIFSLSHMRAVGYEALLRAHDALDRPVSPLDVFGEAARHGEAT
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHH
QVDRLAQALHLENFARFGAEREWLFLNVHPGVLTDPFQAAALFANLRRLDIAPRRIVLEV
HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHH
LEQRAEDIERLADAVREFREHGFLIALDDFGAGHSNIERIWQLNPDIVKLDRIMLSHAQH
HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHH
RAGLTAILHGLVTLLHEAGKLVLIEGIETEHEAQIALACDADFVQGHFFGRPAPGLPDSA
HHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEECCHHHHCCCCCCCCCCCCCHH
AASTCIGELTERYRQQTEAAERRDAQRLAPYQRAFERAAERLAAGEPLDEVCWNFLALDH
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
AARCFLLDERGRQAGRNVVLRADRASHETRFLPLADAQGANWLRRPYFRAAIAEPGRVQA
HHHEEEECHHHHHCCCCEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCEE
TRPYLSINEALPCVTLSIAVRVNDALCVLCGDIDWIDADAAAGA
CCCCEECCCCCCEEEEEEEEEECCEEEEEECCCCEECCCCCCCC
>Mature Secondary Structure
MRLVDNYDRTTEDHDENPRVACFACRRFRHQEGRRMTIAQQERPVAASPYRFEAEMTSGL
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEHHCCCCCCCCCCEEHHHHHHHH
ERVAAHHHDLTLTSVFQPIFSLSHMRAVGYEALLRAHDALDRPVSPLDVFGEAARHGEAT
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHH
QVDRLAQALHLENFARFGAEREWLFLNVHPGVLTDPFQAAALFANLRRLDIAPRRIVLEV
HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHH
LEQRAEDIERLADAVREFREHGFLIALDDFGAGHSNIERIWQLNPDIVKLDRIMLSHAQH
HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHH
RAGLTAILHGLVTLLHEAGKLVLIEGIETEHEAQIALACDADFVQGHFFGRPAPGLPDSA
HHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEECCHHHHCCCCCCCCCCCCCHH
AASTCIGELTERYRQQTEAAERRDAQRLAPYQRAFERAAERLAAGEPLDEVCWNFLALDH
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
AARCFLLDERGRQAGRNVVLRADRASHETRFLPLADAQGANWLRRPYFRAAIAEPGRVQA
HHHEEEECHHHHHCCCCEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCEE
TRPYLSINEALPCVTLSIAVRVNDALCVLCGDIDWIDADAAAGA
CCCCEECCCCCCEEEEEEEEEECCEEEEEECCCCEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8265357; 9278503 [H]