Click here to switch to the map view.

The map label for this gene is yicC [C]

Identifier: 126452706

GI number: 126452706

Start: 2951859

End: 2952782

Strand: Reverse

Name: yicC [C]

Synonym: BURPS1106A_3016

Alternate gene names: 126452706

Gene position: 2952782-2951859 (Counterclockwise)

Preceding gene: 126453269

Following gene: 126451930

Centisome position: 74.03

GC content: 69.37

Gene sequence:

>924_bases
ATGATCTACAGCATGACGGGCTACGCGAGCGCGACGCGCGATCTCGCGACGGCCTCCGGCAATGGCGGCACGAGCGTATC
GGTTGAGTTGCGGACCGTGAATTCGCGGTTCCTCGACCTGAATTTCCGGATGCCGGACGATGTGCGCGCGTGCGAGCCGG
CGCTGCGCGAGATGCTGATGAACAAGCTGTCGCGCGGCAAGGTGGACGTGCGCATCAACCTGCAGCGCGGCGATCAGAGC
GTGAACGCCGGCGCGCTGAACCATGCGGCGCTCGGCCAGCTCGCCGAGCTCGAGCGCGCGGTGCTCGACGCGTTTCCGGG
CGTGGGCCGCCTGCGCGCGGGCGAGATCCTGCGCTGGCCCGGCGTGCTCGCCGAGAGCGGCGTGTCGGCCGACGCGCTGC
GCGAAGCGGTGCTCGCGTGCGGCAAGGAAGCGGTCGCCGAGCTCGTCGTCGTGCGCTCGCGCGAGGGCGCGCAGCTCGCG
ACGATGCTGCTCGGGAACGTCGCCGAGATGGAGGCGATCGTCGCGCGCATCGCGCCGCTCGTGCCGGAGCTGATCGCCAA
GCATCAGCAGAAGATCGTCGAGCGGCTGCAGGAGGCGCTCGGCGTCGCGGCGCCGGAAGGCGGCGCGCCCCTCGTGTCGC
GCGAGGAGGCGGCCGAGCGCATCCGTCAGGAAGTGACGATGTACGGCATCCGCATCGACATCGCGGAAGAGCTGTCGCGC
CTCACCGCGCATCTGAACGAGACGCGCCACGTGATCGAGAAGGGCGGCCGCGTCGGCAAGCGTCTCGACTTCATGATGCA
GGAGCTGAACCGCGAGGCGAACACGCTCGGCTCGAAGGCGGCGGCGAAGGAGCTCGCCGACGCGTCGATGGCGCTCAAGC
TGCTGATCGAGCAGATGCGCGAGCAAGTGCAAAACCTGGAGTAA

Upstream 100 bases:

>100_bases
GCAAAAATGGGATAATGGATGTTTCGCGCCCCGCGCCTCGCAAGCGCCGGGCGTCTCGAATCCTTCCGGCCCGCTGGGCC
ATCAAACGACGGGACGAACG

Downstream 100 bases:

>100_bases
CGCAACATGACCGATTCGAACCGCGACGGCGCAGCCGCGCATTCGCTGCACGCCGGCGTCTATCCCGGCAATCTCTTCAT
GGTCGTCGCGCCGTCGGGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MIYSMTGYASATRDLATASGNGGTSVSVELRTVNSRFLDLNFRMPDDVRACEPALREMLMNKLSRGKVDVRINLQRGDQS
VNAGALNHAALGQLAELERAVLDAFPGVGRLRAGEILRWPGVLAESGVSADALREAVLACGKEAVAELVVVRSREGAQLA
TMLLGNVAEMEAIVARIAPLVPELIAKHQQKIVERLQEALGVAAPEGGAPLVSREEAAERIRQEVTMYGIRIDIAEELSR
LTAHLNETRHVIEKGGRVGKRLDFMMQELNREANTLGSKAAAKELADASMALKLLIEQMREQVQNLE

Sequences:

>Translated_307_residues
MIYSMTGYASATRDLATASGNGGTSVSVELRTVNSRFLDLNFRMPDDVRACEPALREMLMNKLSRGKVDVRINLQRGDQS
VNAGALNHAALGQLAELERAVLDAFPGVGRLRAGEILRWPGVLAESGVSADALREAVLACGKEAVAELVVVRSREGAQLA
TMLLGNVAEMEAIVARIAPLVPELIAKHQQKIVERLQEALGVAAPEGGAPLVSREEAAERIRQEVTMYGIRIDIAEELSR
LTAHLNETRHVIEKGGRVGKRLDFMMQELNREANTLGSKAAAKELADASMALKLLIEQMREQVQNLE
>Mature_307_residues
MIYSMTGYASATRDLATASGNGGTSVSVELRTVNSRFLDLNFRMPDDVRACEPALREMLMNKLSRGKVDVRINLQRGDQS
VNAGALNHAALGQLAELERAVLDAFPGVGRLRAGEILRWPGVLAESGVSADALREAVLACGKEAVAELVVVRSREGAQLA
TMLLGNVAEMEAIVARIAPLVPELIAKHQQKIVERLQEALGVAAPEGGAPLVSREEAAERIRQEVTMYGIRIDIAEELSR
LTAHLNETRHVIEKGGRVGKRLDFMMQELNREANTLGSKAAAKELADASMALKLLIEQMREQVQNLE

Specific function: Unknown

COG id: COG1561

COG function: function code S; Uncharacterized stress-induced protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0701 family [H]

Homologues:

Organism=Escherichia coli, GI1790075, Length=307, Percent_Identity=36.1563517915309, Blast_Score=172, Evalue=4e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005229
- InterPro:   IPR013551
- InterPro:   IPR013527 [H]

Pfam domain/function: PF08340 DUF1732; PF03755 YicC_N [H]

EC number: NA

Molecular weight: Translated: 33311; Mature: 33311

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYSMTGYASATRDLATASGNGGTSVSVELRTVNSRFLDLNFRMPDDVRACEPALREMLM
CEEECCCCHHHHHHHHHCCCCCCCEEEEEEEEECCEEEEEECCCCCHHHHHHHHHHHHHH
NKLSRGKVDVRINLQRGDQSVNAGALNHAALGQLAELERAVLDAFPGVGRLRAGEILRWP
HHHHCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCC
GVLAESGVSADALREAVLACGKEAVAELVVVRSREGAQLATMLLGNVAEMEAIVARIAPL
CHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHH
VPELIAKHQQKIVERLQEALGVAAPEGGAPLVSREEAAERIRQEVTMYGIRIDIAEELSR
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEHHHHHHH
LTAHLNETRHVIEKGGRVGKRLDFMMQELNREANTLGSKAAAKELADASMALKLLIEQMR
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EQVQNLE
HHHHCCC
>Mature Secondary Structure
MIYSMTGYASATRDLATASGNGGTSVSVELRTVNSRFLDLNFRMPDDVRACEPALREMLM
CEEECCCCHHHHHHHHHCCCCCCCEEEEEEEEECCEEEEEECCCCCHHHHHHHHHHHHHH
NKLSRGKVDVRINLQRGDQSVNAGALNHAALGQLAELERAVLDAFPGVGRLRAGEILRWP
HHHHCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCC
GVLAESGVSADALREAVLACGKEAVAELVVVRSREGAQLATMLLGNVAEMEAIVARIAPL
CHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHH
VPELIAKHQQKIVERLQEALGVAAPEGGAPLVSREEAAERIRQEVTMYGIRIDIAEELSR
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEHHHHHHH
LTAHLNETRHVIEKGGRVGKRLDFMMQELNREANTLGSKAAAKELADASMALKLLIEQMR
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EQVQNLE
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]