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The map label for this gene is ygfZ [C]

Identifier: 126452702

GI number: 126452702

Start: 2298062

End: 2299108

Strand: Direct

Name: ygfZ [C]

Synonym: BURPS1106A_2322

Alternate gene names: 126452702

Gene position: 2298062-2299108 (Clockwise)

Preceding gene: 126454208

Following gene: 126453769

Centisome position: 57.62

GC content: 72.78

Gene sequence:

>1047_bases
ATGAGCACACCGATCGCCTCCCCGGCCGCGCAGGCCATCGCTCCCACCGCGCCGCCGACGCTGCCCCGTCCGAGCGCCGA
CGATTTCGCCGCCGTGCTCGAGCGCGGCGCGTTCGCGGCGCTCGAGCAATTCGGCATCGTCGACGTGACGGGCGCCGACG
CCGCGACGTTTCTGCACGGCCAGTTGACGAACGACGTCGAACATCTCGACGCCGCGAGCGCGCGCCTGGCCGGCTACTGC
TCGCCGAAAGGGCGCCTGCTCGCGTCGTTCCTCGCATGGCGCGCCGGCCACGACGTGCGCCTGCTCGTATCGAAGGACGT
GCAGCCCGCGGTGCAAAAGCGCCTGTCGATGTTCGTGCTGCGCGCGAAGGCGAAGCTCGCCGACGCGAGCGGCGCGCTCG
TCGCAATCGGCTTCGCGGGCGACGTGCGCGCCGCGCTGTCGGGCATCTTCGACGCCCTGCCCGACGGCATCCACACGAAA
GTCGACGCGCCGGCCGGCGCGCTCATGCGGCTGCCCGACGCGGCGGGCCGCGCGCGCTACCTGTGGATCGCGACGCGCGC
CGAGTTCGACGCGCGCGTGCCCGCGCTCGAAGCCGCGCTGCCGCGCGTGTCGGCCGCCGTCTGGGATTGGCTCGACGTGC
GCGCGGGCGAGCCGCGCATCACGCAGCCGGCCGTCGAGCAATTCGTTCCGCAAATGGTCAACTTCGACGTGATCGGCGGC
GTCAACTTCCGCAAGGGCTGCTATCCGGGCCAGGAAGTCGTCGCGCGCAGCCAGTACCGGGGCACGATCAAGCGCCGCAC
CGCGCTCGCGCACGTCGCGGCCGGCACCGACGCCGCGCATGCGGGCGTCGAGCTCTATCATTCGGACGATCCGGGCCAGC
CGTGCGGGATGATCGTGAACGCGGCGGCGGCGCCCGAAGGCGGCGTCGACGCGCTCGTCGAGATCAAGCTCGCCGCGCTC
GGGAACGGATCGGTCCACCTGGCGTCCGCGAGCGGCCCGACGCTCGCGTTCCTGCCGCTTCCCTACGCGCTGCCCGTCGA
AGCCTGA

Upstream 100 bases:

>100_bases
CGCACTTCTTCAGTAGGGACATGCGGAACGTGAATCAGGTAAGACCCATATAATACTTGCTCGCCTCTGCCAAAGTCAGG
ATTGACTGTTCCCTCATTCC

Downstream 100 bases:

>100_bases
CGGCCGCGCGCCGCCGGAGCGCGCGCGCCGCGGCGCGCCGGCCGGCCTCACCCAGCGAGGATATCGCCCGATGTGCCTGA
TCGTATTCGATTGGCAGCCC

Product: glycine cleavage T-protein (aminomethyl transferase) family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 347

Protein sequence:

>348_residues
MSTPIASPAAQAIAPTAPPTLPRPSADDFAAVLERGAFAALEQFGIVDVTGADAATFLHGQLTNDVEHLDAASARLAGYC
SPKGRLLASFLAWRAGHDVRLLVSKDVQPAVQKRLSMFVLRAKAKLADASGALVAIGFAGDVRAALSGIFDALPDGIHTK
VDAPAGALMRLPDAAGRARYLWIATRAEFDARVPALEAALPRVSAAVWDWLDVRAGEPRITQPAVEQFVPQMVNFDVIGG
VNFRKGCYPGQEVVARSQYRGTIKRRTALAHVAAGTDAAHAGVELYHSDDPGQPCGMIVNAAAAPEGGVDALVEIKLAAL
GNGSVHLASASGPTLAFLPLPYALPVEA

Sequences:

>Translated_348_residues
MSTPIASPAAQAIAPTAPPTLPRPSADDFAAVLERGAFAALEQFGIVDVTGADAATFLHGQLTNDVEHLDAASARLAGYC
SPKGRLLASFLAWRAGHDVRLLVSKDVQPAVQKRLSMFVLRAKAKLADASGALVAIGFAGDVRAALSGIFDALPDGIHTK
VDAPAGALMRLPDAAGRARYLWIATRAEFDARVPALEAALPRVSAAVWDWLDVRAGEPRITQPAVEQFVPQMVNFDVIGG
VNFRKGCYPGQEVVARSQYRGTIKRRTALAHVAAGTDAAHAGVELYHSDDPGQPCGMIVNAAAAPEGGVDALVEIKLAAL
GNGSVHLASASGPTLAFLPLPYALPVEA
>Mature_347_residues
STPIASPAAQAIAPTAPPTLPRPSADDFAAVLERGAFAALEQFGIVDVTGADAATFLHGQLTNDVEHLDAASARLAGYCS
PKGRLLASFLAWRAGHDVRLLVSKDVQPAVQKRLSMFVLRAKAKLADASGALVAIGFAGDVRAALSGIFDALPDGIHTKV
DAPAGALMRLPDAAGRARYLWIATRAEFDARVPALEAALPRVSAAVWDWLDVRAGEPRITQPAVEQFVPQMVNFDVIGGV
NFRKGCYPGQEVVARSQYRGTIKRRTALAHVAAGTDAAHAGVELYHSDDPGQPCGMIVNAAAAPEGGVDALVEIKLAALG
NGSVHLASASGPTLAFLPLPYALPVEA

Specific function: Folate-binding protein involved in regulating the level of ATP-dnaA and in the modification of some tRNAs. It is probably a key factor in regulatory networks that act via tRNA modification, such as initiation of chromosomal replication [H]

COG id: COG0354

COG function: function code R; Predicted aminomethyltransferase related to GcvT

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tRNA-modifying ygfZ family [H]

Homologues:

Organism=Escherichia coli, GI1789265, Length=306, Percent_Identity=28.4313725490196, Blast_Score=113, Evalue=2e-26,

Paralogues:

None

Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017703
- InterPro:   IPR006222 [H]

Pfam domain/function: PF01571 GCV_T [H]

EC number: NA

Molecular weight: Translated: 36243; Mature: 36112

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTPIASPAAQAIAPTAPPTLPRPSADDFAAVLERGAFAALEQFGIVDVTGADAATFLHG
CCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHCCCEEECCCCHHHHHHC
QLTNDVEHLDAASARLAGYCSPKGRLLASFLAWRAGHDVRLLVSKDVQPAVQKRLSMFVL
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHH
RAKAKLADASGALVAIGFAGDVRAALSGIFDALPDGIHTKVDAPAGALMRLPDAAGRARY
HHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCEECCCCCCHHEECCCCCCCEEE
LWIATRAEFDARVPALEAALPRVSAAVWDWLDVRAGEPRITQPAVEQFVPQMVNFDVIGG
EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCEEEECC
VNFRKGCYPGQEVVARSQYRGTIKRRTALAHVAAGTDAAHAGVELYHSDDPGQPCGMIVN
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCCEEE
AAAAPEGGVDALVEIKLAALGNGSVHLASASGPTLAFLPLPYALPVEA
CCCCCCCCCCEEEEEEEEEECCCCEEEEECCCCEEEEEECCCCCCCCC
>Mature Secondary Structure 
STPIASPAAQAIAPTAPPTLPRPSADDFAAVLERGAFAALEQFGIVDVTGADAATFLHG
CCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHCCCEEECCCCHHHHHHC
QLTNDVEHLDAASARLAGYCSPKGRLLASFLAWRAGHDVRLLVSKDVQPAVQKRLSMFVL
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHH
RAKAKLADASGALVAIGFAGDVRAALSGIFDALPDGIHTKVDAPAGALMRLPDAAGRARY
HHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCEECCCCCCHHEECCCCCCCEEE
LWIATRAEFDARVPALEAALPRVSAAVWDWLDVRAGEPRITQPAVEQFVPQMVNFDVIGG
EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCEEEECC
VNFRKGCYPGQEVVARSQYRGTIKRRTALAHVAAGTDAAHAGVELYHSDDPGQPCGMIVN
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCCEEE
AAAAPEGGVDALVEIKLAALGNGSVHLASASGPTLAFLPLPYALPVEA
CCCCCCCCCCEEEEEEEEEECCCCEEEEECCCCEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA