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The map label for this gene is hofQ [C]

Identifier: 126452556

GI number: 126452556

Start: 1749701

End: 1750999

Strand: Direct

Name: hofQ [C]

Synonym: BURPS1106A_1789

Alternate gene names: 126452556

Gene position: 1749701-1750999 (Clockwise)

Preceding gene: 126451660

Following gene: 126453930

Centisome position: 43.87

GC content: 70.52

Gene sequence:

>1299_bases
GTGGCGTTCGGCGTGCTGCTGTCGTTCGCCGCGCGGGCGGCCGAGACGGGGACGATCGAGCTCGCCGCGGGGACGCAGCG
GCAGATTGCCGTCGGGCACGGCGTGCAGCGGGTCGCCATCGCAGACCCGAACGTCGCCGACGTGCTCGTCATCAAGGGCG
GCCGCGGCGGCGTGCTGCTCGTCGCGAAGGCGGCCGGCACGACGAGCCTGATGGTGTGGGAGCGCGGCCGCGACGAGCCG
GCGGCCTACACGGTCAACGTCGTGAGCGGCGCGGCGCGCGCGCTGCTCGACGGCGGCTCGCCGAGCGTGAAGGCGTACAA
CGGCACGGCGGTCGTGGCGGGCTCGGCCGCGACGCTCGACGCGCATGCGCGCGCGCTCGCCGTCGGCAAGGGGATGGCGG
GCAAGGACGGCGGCGTCCTCGACGTATCGACGGTCGGCGGCAAGAACGTCGTGCAGGTCGACGTGCGCGTCGTCGAATTC
AGCCGCTCGGTGCTCAAGCAGGCGGGCCTGAATTTCTTCAAGCAGAACAACGGCTTCACGTTCGGCTCGTTCGCGCCCGC
CGGCCTCGCGTCGGTGACGGGCGGCGGCACGTCGTCGATGTCGGTGTCGGCGAACATTCCGATCGCGTCCGCGTTCAACC
TCGTCGTCGGCTCGGCGACGCGCGGCCTGTTCGCCGATCTGTCGATCCTCGAGGCGAACAACCTCGCGCGCGTGCTCGCG
CAGCCGACGCTCGTCGCGCTGTCCGGGCAGAGCGCGAGCTTCCTCGCGGGCGGCGAGATCCCGGTGCCGGTGCCGCAGTC
GCTCGGCACGATCTCGATCGACTGGAAGCCGTACGGCGTCGGCCTCACGCTGACGCCGACCGTGCTGAGCCCGCGCCGGA
TCGCGCTGAAGGTCGCGCCCGAATCGAGCCAGCTCGACTTCGTCCATTCGATCACGATCAACGGCGTGACGGTGCCCGCG
CTCACGACGCGCCGCGCGGACACGACCGTCGAGCTGGGCGATGGCGAGAGCTTCGCGATCGGCGGGCTGATCGACCGCGA
GACGACGTCGAACGTCGACAAGGTGCCGTTCCTCGGCGATCTGCCGATCATCGGCACGTTTTTCAAGCATCTCAGCTATC
AGCAGAACGACAAGGAACTCGTGATCATCGTGACGCCGCATCTCGTCGCGCCGATCGCGAAGAACGCGTCGCTGCCCGCG
ACGCCCGGCGAGCTGTCCGAACAGCGCGACGGGCCGGTGTGGCGGTCGTATCTCGGCGGCGTGCTGTCGCCGGATGCGGG
GCCGGGGTTCTCGAAATGA

Upstream 100 bases:

>100_bases
CGCCTATTGATCGACAAGCGGTTTCGAACAGTGACGGCAGGGAGAGGGCCGGCTCGCGCCGGTCTCCGACACGATGAAAA
ATAAACTGATTGCATGGGCG

Downstream 100 bases:

>100_bases
GCGCGCGACGCCACGGCCGCGCGCGCGCGAGCGCCGCGACGCGGCGCGCAACCGGAATGCATCACGATGAACGCGAGAAC
ACTCTCCTTGGCTGAACCCG

Product: type II/III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 432; Mature: 431

Protein sequence:

>432_residues
MAFGVLLSFAARAAETGTIELAAGTQRQIAVGHGVQRVAIADPNVADVLVIKGGRGGVLLVAKAAGTTSLMVWERGRDEP
AAYTVNVVSGAARALLDGGSPSVKAYNGTAVVAGSAATLDAHARALAVGKGMAGKDGGVLDVSTVGGKNVVQVDVRVVEF
SRSVLKQAGLNFFKQNNGFTFGSFAPAGLASVTGGGTSSMSVSANIPIASAFNLVVGSATRGLFADLSILEANNLARVLA
QPTLVALSGQSASFLAGGEIPVPVPQSLGTISIDWKPYGVGLTLTPTVLSPRRIALKVAPESSQLDFVHSITINGVTVPA
LTTRRADTTVELGDGESFAIGGLIDRETTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIAKNASLPA
TPGELSEQRDGPVWRSYLGGVLSPDAGPGFSK

Sequences:

>Translated_432_residues
MAFGVLLSFAARAAETGTIELAAGTQRQIAVGHGVQRVAIADPNVADVLVIKGGRGGVLLVAKAAGTTSLMVWERGRDEP
AAYTVNVVSGAARALLDGGSPSVKAYNGTAVVAGSAATLDAHARALAVGKGMAGKDGGVLDVSTVGGKNVVQVDVRVVEF
SRSVLKQAGLNFFKQNNGFTFGSFAPAGLASVTGGGTSSMSVSANIPIASAFNLVVGSATRGLFADLSILEANNLARVLA
QPTLVALSGQSASFLAGGEIPVPVPQSLGTISIDWKPYGVGLTLTPTVLSPRRIALKVAPESSQLDFVHSITINGVTVPA
LTTRRADTTVELGDGESFAIGGLIDRETTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIAKNASLPA
TPGELSEQRDGPVWRSYLGGVLSPDAGPGFSK
>Mature_431_residues
AFGVLLSFAARAAETGTIELAAGTQRQIAVGHGVQRVAIADPNVADVLVIKGGRGGVLLVAKAAGTTSLMVWERGRDEPA
AYTVNVVSGAARALLDGGSPSVKAYNGTAVVAGSAATLDAHARALAVGKGMAGKDGGVLDVSTVGGKNVVQVDVRVVEFS
RSVLKQAGLNFFKQNNGFTFGSFAPAGLASVTGGGTSSMSVSANIPIASAFNLVVGSATRGLFADLSILEANNLARVLAQ
PTLVALSGQSASFLAGGEIPVPVPQSLGTISIDWKPYGVGLTLTPTVLSPRRIALKVAPESSQLDFVHSITINGVTVPAL
TTRRADTTVELGDGESFAIGGLIDRETTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIAKNASLPAT
PGELSEQRDGPVWRSYLGGVLSPDAGPGFSK

Specific function: Involved in the secretion of an unknown compound (Potential) [H]

COG id: COG4964

COG function: function code U; Flp pilus assembly protein, secretin CpaC

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BON domain [H]

Homologues:

Organism=Escherichia coli, GI1789793, Length=171, Percent_Identity=36.2573099415205, Blast_Score=95, Evalue=8e-21,
Organism=Escherichia coli, GI87082242, Length=168, Percent_Identity=29.1666666666667, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR004846
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00263 Secretin [H]

EC number: NA

Molecular weight: Translated: 44202; Mature: 44071

Theoretical pI: Translated: 8.81; Mature: 8.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFGVLLSFAARAAETGTIELAAGTQRQIAVGHGVQRVAIADPNVADVLVIKGGRGGVLL
CHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCCEEEEEECCCCCEEEEEEECCCCCEEE
VAKAAGTTSLMVWERGRDEPAAYTVNVVSGAARALLDGGSPSVKAYNGTAVVAGSAATLD
EEECCCCEEEEEEECCCCCCCEEEEEECCCCHHHHCCCCCCCEEEECCEEEEECCCEEEH
AHARALAVGKGMAGKDGGVLDVSTVGGKNVVQVDVRVVEFSRSVLKQAGLNFFKQNNGFT
HHHEEEEECCCCCCCCCCEEEEEECCCCEEEEEEEEEEHHHHHHHHHHCCCEEECCCCEE
FGSFAPAGLASVTGGGTSSMSVSANIPIASAFNLVVGSATRGLFADLSILEANNLARVLA
ECCCCCCCHHEECCCCCCCEEEEECCCHHHHHHEEEECCCCCCEEEEEEEECCCHHHHHC
QPTLVALSGQSASFLAGGEIPVPVPQSLGTISIDWKPYGVGLTLTPTVLSPRRIALKVAP
CCEEEEEECCCCEEEECCCCCCCCCCCCCEEEEEEEEEEECEEECCCCCCCCEEEEEECC
ESSQLDFVHSITINGVTVPALTTRRADTTVELGDGESFAIGGLIDRETTSNVDKVPFLGD
CCCCEEEEEEEEECCEEECEEEECCCCCEEEECCCCEEEECCEECCCCCCCCCCCCCCCC
LPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIAKNASLPATPGELSEQRDGPVWRSYLGG
CCHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCC
VLSPDAGPGFSK
EECCCCCCCCCC
>Mature Secondary Structure 
AFGVLLSFAARAAETGTIELAAGTQRQIAVGHGVQRVAIADPNVADVLVIKGGRGGVLL
HHHHHHHHHHHCCCCCEEEEECCCCEEEEECCCEEEEEECCCCCEEEEEEECCCCCEEE
VAKAAGTTSLMVWERGRDEPAAYTVNVVSGAARALLDGGSPSVKAYNGTAVVAGSAATLD
EEECCCCEEEEEEECCCCCCCEEEEEECCCCHHHHCCCCCCCEEEECCEEEEECCCEEEH
AHARALAVGKGMAGKDGGVLDVSTVGGKNVVQVDVRVVEFSRSVLKQAGLNFFKQNNGFT
HHHEEEEECCCCCCCCCCEEEEEECCCCEEEEEEEEEEHHHHHHHHHHCCCEEECCCCEE
FGSFAPAGLASVTGGGTSSMSVSANIPIASAFNLVVGSATRGLFADLSILEANNLARVLA
ECCCCCCCHHEECCCCCCCEEEEECCCHHHHHHEEEECCCCCCEEEEEEEECCCHHHHHC
QPTLVALSGQSASFLAGGEIPVPVPQSLGTISIDWKPYGVGLTLTPTVLSPRRIALKVAP
CCEEEEEECCCCEEEECCCCCCCCCCCCCEEEEEEEEEEECEEECCCCCCCCEEEEEECC
ESSQLDFVHSITINGVTVPALTTRRADTTVELGDGESFAIGGLIDRETTSNVDKVPFLGD
CCCCEEEEEEEEECCEEECEEEECCCCCEEEECCCCEEEECCEECCCCCCCCCCCCCCCC
LPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIAKNASLPATPGELSEQRDGPVWRSYLGG
CCHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCC
VLSPDAGPGFSK
EECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]