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The map label for this gene is ydhO [H]

Identifier: 126452477

GI number: 126452477

Start: 2496221

End: 2496877

Strand: Reverse

Name: ydhO [H]

Synonym: BURPS1106A_2543

Alternate gene names: 126452477

Gene position: 2496877-2496221 (Counterclockwise)

Preceding gene: 126452152

Following gene: 126451684

Centisome position: 62.6

GC content: 65.14

Gene sequence:

>657_bases
ATGTTCGTCGGCATCCTGATCGCTGCAGCTCCCGGCGCGTTCGCCGACGAAGTCAGCAGTTCCAGTCAGAATGCGATCAA
TTCGGCTCAATCCGAGCCGGCTTCCTCCTCCTCGAATCTCCAACAGGTCAACGTGCCCGCACCCGCGAAGAGCCAGGGCG
GCGCCAAGGCGTTCCTGTCGGGCATGGCCGGCAAAGCGGGCGACGTCGTCGTCGGCGCGCTGAACATGATCGGCGTGCGC
TACCGCTGGGGCGGCAACACGCCGGATTCGGGCCTCGATTGCAGCGGTTTCGTCCGCTACGTGTTCCAGGACACGCTCGG
CATGTCGCTGCCGCGTCGCGCGGAGGAGATGAGCCGTGTCGGCGAGAAGGTGCGCATGAGCGAGCTGAAGCCGGGCGACC
TCGTATTCTTCAACACGATGCGCCGGACGTTCTCGCACGTCGGCATCTACATCGGCGACAACAAGTTCGTGCACTCGCCG
TCGACGGGCAGCACGATTCGCGTCGACGATCTCGATAGCGGCTACTGGGAAAAGCGTTTCACCGGCGCGCGCCGGATCGA
GACGCAGTTCTCGACGAAGCCCGACGATCTGCGCCAGCGCGTGAAGGCGACGATCGGCGACGGCGGCGTCAACGCGAGCG
CGAGCGGTAGCAACTAG

Upstream 100 bases:

>100_bases
ACCGGAATTTTTCCGCCAATCAGCTGATTTTCCAGCACAAGTTCATCGACCAATGCAGCACCGATATCTGACCCAGGCTT
GTACGCGCGTCGTCGCCGGG

Downstream 100 bases:

>100_bases
CCGGTCACGCCGCATCGCGCCGGCCGATGCCGGTGTCGAAGCCCCGCGCTCCCATGGAGGCGGGGCTTTTGCTTTGGGGC
GGCGTTTTCGGCGCGGCGCG

Product: NlpC/P60 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MFVGILIAAAPGAFADEVSSSSQNAINSAQSEPASSSSNLQQVNVPAPAKSQGGAKAFLSGMAGKAGDVVVGALNMIGVR
YRWGGNTPDSGLDCSGFVRYVFQDTLGMSLPRRAEEMSRVGEKVRMSELKPGDLVFFNTMRRTFSHVGIYIGDNKFVHSP
STGSTIRVDDLDSGYWEKRFTGARRIETQFSTKPDDLRQRVKATIGDGGVNASASGSN

Sequences:

>Translated_218_residues
MFVGILIAAAPGAFADEVSSSSQNAINSAQSEPASSSSNLQQVNVPAPAKSQGGAKAFLSGMAGKAGDVVVGALNMIGVR
YRWGGNTPDSGLDCSGFVRYVFQDTLGMSLPRRAEEMSRVGEKVRMSELKPGDLVFFNTMRRTFSHVGIYIGDNKFVHSP
STGSTIRVDDLDSGYWEKRFTGARRIETQFSTKPDDLRQRVKATIGDGGVNASASGSN
>Mature_218_residues
MFVGILIAAAPGAFADEVSSSSQNAINSAQSEPASSSSNLQQVNVPAPAKSQGGAKAFLSGMAGKAGDVVVGALNMIGVR
YRWGGNTPDSGLDCSGFVRYVFQDTLGMSLPRRAEEMSRVGEKVRMSELKPGDLVFFNTMRRTFSHVGIYIGDNKFVHSP
STGSTIRVDDLDSGYWEKRFTGARRIETQFSTKPDDLRQRVKATIGDGGVNASASGSN

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=138, Percent_Identity=44.2028985507246, Blast_Score=124, Evalue=4e-30,
Organism=Escherichia coli, GI1786421, Length=179, Percent_Identity=37.9888268156425, Blast_Score=110, Evalue=5e-26,
Organism=Escherichia coli, GI1788501, Length=109, Percent_Identity=47.7064220183486, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1788001, Length=110, Percent_Identity=42.7272727272727, Blast_Score=89, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 23194; Mature: 23194

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVGILIAAAPGAFADEVSSSSQNAINSAQSEPASSSSNLQQVNVPAPAKSQGGAKAFLS
CEEEEEEEECCCHHHHHHCCCHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCHHHHHH
GMAGKAGDVVVGALNMIGVRYRWGGNTPDSGLDCSGFVRYVFQDTLGMSLPRRAEEMSRV
HCCCCCCCCEEEHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
GEKVRMSELKPGDLVFFNTMRRTFSHVGIYIGDNKFVHSPSTGSTIRVDDLDSGYWEKRF
HHHHHHHCCCCCCEEEHHHHHHHHHHCEEEECCCEEEECCCCCCEEEEECCCCCHHHHHH
TGARRIETQFSTKPDDLRQRVKATIGDGGVNASASGSN
CCHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MFVGILIAAAPGAFADEVSSSSQNAINSAQSEPASSSSNLQQVNVPAPAKSQGGAKAFLS
CEEEEEEEECCCHHHHHHCCCHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCHHHHHH
GMAGKAGDVVVGALNMIGVRYRWGGNTPDSGLDCSGFVRYVFQDTLGMSLPRRAEEMSRV
HCCCCCCCCEEEHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
GEKVRMSELKPGDLVFFNTMRRTFSHVGIYIGDNKFVHSPSTGSTIRVDDLDSGYWEKRF
HHHHHHHCCCCCCEEEHHHHHHHHHHCEEEECCCEEEECCCCCCEEEEECCCCCHHHHHH
TGARRIETQFSTKPDDLRQRVKATIGDGGVNASASGSN
CCHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]