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The map label for this gene is araH [H]

Identifier: 126452475

GI number: 126452475

Start: 3388813

End: 3389817

Strand: Reverse

Name: araH [H]

Synonym: BURPS1106A_3484

Alternate gene names: 126452475

Gene position: 3389817-3388813 (Counterclockwise)

Preceding gene: 126454330

Following gene: 126451580

Centisome position: 84.99

GC content: 66.77

Gene sequence:

>1005_bases
ATGCAAGCAAGAGAGAATCTTCCACCGGCCGCGGCGCACGCGGCGGCCGTGCCGACCGAGGATCGGCAGCGCTGGCGGCA
GCACGCCGCCGACTACAGTCTCGTCGCGATCTTCGCGGCGATGTTCGTCGCGATGTCGCTGACGGTCGATCATTTCTTCT
CGATCGACAACATGCTCGGGCTCGCGCTGTCGATCTCGCAGATCGGGATGGTCGCGTGCACGATGATGTTCTGCCTCGCG
TCGCGCGATTTCGATCTGTCGATCGGCTCGACGGTCGCGTTCGCGGGCGTGCTGTGCGCGATGGTGCTCAACGCGACCGA
CAACACGTTCGTCGCGATCGCGGCGGCAGTCGCGGCGGGCGCCGTCATCGGCTTCGTCAACGGCGCGGTGATCGCCTATC
TGCGGATCAACGCGCTGATCACGACGCTCGCGACGATGGAGATCGTGCGCGGGCTCGGCTTCATCGTGTCGAAGGGGCAG
GCGGTCGGCGTGTCGTCGGAGACGTTCATCGCGTTGGGCGGGCTCACGTTCTTCGGCGTGTCGCTGCCGATCTGGGTGAC
GCTCGCGTGCTTCGTCGTGTTCGGCGTGCTGCTCAACCAGACCGTGTACGGCCGCAACACGCTCGCGATCGGCGGCAACC
CGGAGGCGTCGCGGCTCGCCGGCATCAACGTCGAGCGCACGCGCGTCTACATCTTCCTGATCCAGGGCGCGGTGACCGCG
CTCGCGGGCGTGATTCTCGCGTCGCGGATCACGTCGGGCCAGCCGAACGCGGCGCAGGGCTTCGAGCTGAACGTGATTTC
CGCGTGCGTGCTGGGCGGCGTGTCGCTCGCGGGCGGACGCGCGTCGATCTCGGGCGTCGTGATCGGCGTGCTGATCATGG
GCACCGTCGAGAACGTGATGAACCTGCTGAACATCGATGCGTTCTATCAATACCTGGTGCGCGGCGCGATCCTGCTCGCC
GCCGTGCTGCTCGACCAGTTGAAGAACCGCGGCGCGCGCGATTGA

Upstream 100 bases:

>100_bases
GCGCGCCGCCCGGCGCGATGACGTTTCGCGAAGCGCGCGACGACGGATTCGACGATTGGAGACGAGGGCGGCCGCGCCGC
CCGGCAGAGGAGCAAACGAC

Downstream 100 bases:

>100_bases
GCGCGGCGCCCATTTCCGGGAACGAACAGGTGAACGACATGGCTTCGCATCGCGAATCGAATGGCGCGCTCGACGCGCAA
CACGAGCGTTACGCACGCTA

Product: L-arabinose transporter permease protein

Products: ADP; phosphate; arabinose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MQARENLPPAAAHAAAVPTEDRQRWRQHAADYSLVAIFAAMFVAMSLTVDHFFSIDNMLGLALSISQIGMVACTMMFCLA
SRDFDLSIGSTVAFAGVLCAMVLNATDNTFVAIAAAVAAGAVIGFVNGAVIAYLRINALITTLATMEIVRGLGFIVSKGQ
AVGVSSETFIALGGLTFFGVSLPIWVTLACFVVFGVLLNQTVYGRNTLAIGGNPEASRLAGINVERTRVYIFLIQGAVTA
LAGVILASRITSGQPNAAQGFELNVISACVLGGVSLAGGRASISGVVIGVLIMGTVENVMNLLNIDAFYQYLVRGAILLA
AVLLDQLKNRGARD

Sequences:

>Translated_334_residues
MQARENLPPAAAHAAAVPTEDRQRWRQHAADYSLVAIFAAMFVAMSLTVDHFFSIDNMLGLALSISQIGMVACTMMFCLA
SRDFDLSIGSTVAFAGVLCAMVLNATDNTFVAIAAAVAAGAVIGFVNGAVIAYLRINALITTLATMEIVRGLGFIVSKGQ
AVGVSSETFIALGGLTFFGVSLPIWVTLACFVVFGVLLNQTVYGRNTLAIGGNPEASRLAGINVERTRVYIFLIQGAVTA
LAGVILASRITSGQPNAAQGFELNVISACVLGGVSLAGGRASISGVVIGVLIMGTVENVMNLLNIDAFYQYLVRGAILLA
AVLLDQLKNRGARD
>Mature_334_residues
MQARENLPPAAAHAAAVPTEDRQRWRQHAADYSLVAIFAAMFVAMSLTVDHFFSIDNMLGLALSISQIGMVACTMMFCLA
SRDFDLSIGSTVAFAGVLCAMVLNATDNTFVAIAAAVAAGAVIGFVNGAVIAYLRINALITTLATMEIVRGLGFIVSKGQ
AVGVSSETFIALGGLTFFGVSLPIWVTLACFVVFGVLLNQTVYGRNTLAIGGNPEASRLAGINVERTRVYIFLIQGAVTA
LAGVILASRITSGQPNAAQGFELNVISACVLGGVSLAGGRASISGVVIGVLIMGTVENVMNLLNIDAFYQYLVRGAILLA
AVLLDQLKNRGARD

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693152, Length=309, Percent_Identity=57.9288025889968, Blast_Score=344, Evalue=6e-96,
Organism=Escherichia coli, GI1790191, Length=301, Percent_Identity=36.2126245847176, Blast_Score=166, Evalue=3e-42,
Organism=Escherichia coli, GI1788896, Length=316, Percent_Identity=31.9620253164557, Blast_Score=162, Evalue=3e-41,
Organism=Escherichia coli, GI1789992, Length=363, Percent_Identity=33.0578512396694, Blast_Score=144, Evalue=1e-35,
Organism=Escherichia coli, GI1790524, Length=314, Percent_Identity=29.6178343949045, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1787793, Length=245, Percent_Identity=33.8775510204082, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1788471, Length=266, Percent_Identity=37.218045112782, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI87082395, Length=244, Percent_Identity=29.9180327868852, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787794, Length=265, Percent_Identity=28.3018867924528, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI145693214, Length=229, Percent_Identity=29.2576419213974, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34868; Mature: 34868

Theoretical pI: Translated: 7.34; Mature: 7.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQARENLPPAAAHAAAVPTEDRQRWRQHAADYSLVAIFAAMFVAMSLTVDHFFSIDNMLG
CCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LALSISQIGMVACTMMFCLASRDFDLSIGSTVAFAGVLCAMVLNATDNTFVAIAAAVAAG
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
AVIGFVNGAVIAYLRINALITTLATMEIVRGLGFIVSKGQAVGVSSETFIALGGLTFFGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCEEEECCHHHHHH
SLPIWVTLACFVVFGVLLNQTVYGRNTLAIGGNPEASRLAGINVERTRVYIFLIQGAVTA
HHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHCCCCEEHEEEEEEEHHHHHHH
LAGVILASRITSGQPNAAQGFELNVISACVLGGVSLAGGRASISGVVIGVLIMGTVENVM
HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
NLLNIDAFYQYLVRGAILLAAVLLDQLKNRGARD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MQARENLPPAAAHAAAVPTEDRQRWRQHAADYSLVAIFAAMFVAMSLTVDHFFSIDNMLG
CCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LALSISQIGMVACTMMFCLASRDFDLSIGSTVAFAGVLCAMVLNATDNTFVAIAAAVAAG
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
AVIGFVNGAVIAYLRINALITTLATMEIVRGLGFIVSKGQAVGVSSETFIALGGLTFFGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCEEEECCHHHHHH
SLPIWVTLACFVVFGVLLNQTVYGRNTLAIGGNPEASRLAGINVERTRVYIFLIQGAVTA
HHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHCCCCEEHEEEEEEEHHHHHHH
LAGVILASRITSGQPNAAQGFELNVISACVLGGVSLAGGRASISGVVIGVLIMGTVENVM
HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
NLLNIDAFYQYLVRGAILLAAVLLDQLKNRGARD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; arabinose [Periplasm]; H2O [C]

Specific reaction: ATP + arabinose [Periplasm] + H2O = ADP + phosphate + arabinose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2445996; 9097040; 9278503; 8045430 [H]