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The map label for this gene is glcD [H]

Identifier: 126452391

GI number: 126452391

Start: 3251727

End: 3253136

Strand: Direct

Name: glcD [H]

Synonym: BURPS1106A_3329

Alternate gene names: 126452391

Gene position: 3251727-3253136 (Clockwise)

Preceding gene: 126454732

Following gene: 126454867

Centisome position: 81.53

GC content: 70.92

Gene sequence:

>1410_bases
GTGAACCACCCCGCCCCGCCGCCGCGTCGCCCGCTTCCCGCCGCCTTCGTCGACGCGCTCGCCGCCCGGTTCGGCGCGCG
CATGTCGGTCGCGCAGGCGGTGCGCGCCCATCACGGCCGCGACGAGTCGCCGTTCGATCCGCAATTGCCCGACGCCGTCG
TGTTCGCACGCTCGGCCGACGACGTGCGCGATGCAGTCCTCCTCTGCGCACGATACGACGTGCCGCTGATCCCCTACGGC
GTCGGCTCGTCGCTCGAGGGCCATCTGCTCGCGGTGCGCGGCGGCGTGTCGCTCGATCTGTCGGAGATGAACCGCGTGCT
GTCGATCGACGCCGACGACCTGACCGCGACCGTCGAGCCCGGGCTCACGCGCCGCGCGCTGAACGACGCGCTGCGCGACA
CGGGCCTGTTCTTCCCGATCGATCCGGGCGCGGACGCGAGCATCGGCGGGATGACCGCGACGCGCGCGTCCGGCACGAAC
GCGGTGCGCTACGGCACGATGCGCGAGAACGTGCTCGGCCTCGCGGCCGTGCTCGCCGACGGCCGCGTCGTGAAGACGGG
CACCCGCGCGCGCAAATCGTCGGCCGGCTACGATCTCACGCGGCTTTTCGTCGGATCCGAAGGCACGCTCGGCGTGATCA
CCGAGATCACGCTGCGCCTGCATCCGCTGCCCGAGGCCGTGTCGGCCGCCGTGTGCGCGTTCGGCTCGATGAGCGCCGCC
GCGCGCACGGTGATCGAGACGATCCAGATCGGCGTGCCGATCGCGCGCGTCGAATTCGTCGACGCGCTCGCGGTGCGTGC
GATCAACCGCAACACGCAGCTCGGGCTCGCCGAGGCGCCCACGCTCTTCTTCGAATTCCACGGCACCGAATCCGGCGTGC
GCGAGCAGGCGCAGCAAGTCGAGGCGCTCGCCGAGCAGAACGGCGGCCGGGGCTTCGAATGGGCGACGCGCCCCGAGGAT
CGCACGCGCCTCTGGTCCGCGCGCCATCACGCGTATTTCTCGATGCTGCAACTGAAGCCCGGCTGCCGCGCGGTGACGAC
CGACGTCTGCGTGCCGATCTCGCAGCTCGCCGCGTGCGTCGAGGAAACCGAGGCCGATCTGAACGCGTCGTCGCTGCCGT
GCCCGATCGTGGGTCACGTCGGCGACGGCAACTTCCACGTCGCGATCCTCGTCGATCCGACCAAGCCCGAGGAGCTCGCC
GAAGCGGAGGCGCTCAACGACCGGATCGTCGAGCGCGCGCTGCGCATGGGCGGCACCTGCACGGGCGAGCACGGCGTCGG
GCTGCACAAGATGCGCTTTCTCGCCGCCGAACACGGCGAGAACGCGGTCGACACGATGCGCGCGATCAAGCGCGCGCTCG
ATCCGCGCAATCTGATGAACCCCGGCAAGATCTTCACGATCGACGCATGA

Upstream 100 bases:

>100_bases
CAGCCGCGTTCGGGGCGGCGCGCATCCATTCGAGCGTAGAATGATCCGGCCCGCCTCGCCGCGGTGCGTGCCATAAAGAT
CTGCCCCCTAGGAGACTCGC

Downstream 100 bases:

>100_bases
AAACGACGGCGCCCGCGACGAGCCCGAACCGCCGCGCGCCGTGCGCCGCGCAACAGGAGAAGACATGAACGCCCCCGCCG
AACTGTCGGCCGATCTGCGC

Product: putative glycolate oxidase subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 469; Mature: 469

Protein sequence:

>469_residues
MNHPAPPPRRPLPAAFVDALAARFGARMSVAQAVRAHHGRDESPFDPQLPDAVVFARSADDVRDAVLLCARYDVPLIPYG
VGSSLEGHLLAVRGGVSLDLSEMNRVLSIDADDLTATVEPGLTRRALNDALRDTGLFFPIDPGADASIGGMTATRASGTN
AVRYGTMRENVLGLAAVLADGRVVKTGTRARKSSAGYDLTRLFVGSEGTLGVITEITLRLHPLPEAVSAAVCAFGSMSAA
ARTVIETIQIGVPIARVEFVDALAVRAINRNTQLGLAEAPTLFFEFHGTESGVREQAQQVEALAEQNGGRGFEWATRPED
RTRLWSARHHAYFSMLQLKPGCRAVTTDVCVPISQLAACVEETEADLNASSLPCPIVGHVGDGNFHVAILVDPTKPEELA
EAEALNDRIVERALRMGGTCTGEHGVGLHKMRFLAAEHGENAVDTMRAIKRALDPRNLMNPGKIFTIDA

Sequences:

>Translated_469_residues
MNHPAPPPRRPLPAAFVDALAARFGARMSVAQAVRAHHGRDESPFDPQLPDAVVFARSADDVRDAVLLCARYDVPLIPYG
VGSSLEGHLLAVRGGVSLDLSEMNRVLSIDADDLTATVEPGLTRRALNDALRDTGLFFPIDPGADASIGGMTATRASGTN
AVRYGTMRENVLGLAAVLADGRVVKTGTRARKSSAGYDLTRLFVGSEGTLGVITEITLRLHPLPEAVSAAVCAFGSMSAA
ARTVIETIQIGVPIARVEFVDALAVRAINRNTQLGLAEAPTLFFEFHGTESGVREQAQQVEALAEQNGGRGFEWATRPED
RTRLWSARHHAYFSMLQLKPGCRAVTTDVCVPISQLAACVEETEADLNASSLPCPIVGHVGDGNFHVAILVDPTKPEELA
EAEALNDRIVERALRMGGTCTGEHGVGLHKMRFLAAEHGENAVDTMRAIKRALDPRNLMNPGKIFTIDA
>Mature_469_residues
MNHPAPPPRRPLPAAFVDALAARFGARMSVAQAVRAHHGRDESPFDPQLPDAVVFARSADDVRDAVLLCARYDVPLIPYG
VGSSLEGHLLAVRGGVSLDLSEMNRVLSIDADDLTATVEPGLTRRALNDALRDTGLFFPIDPGADASIGGMTATRASGTN
AVRYGTMRENVLGLAAVLADGRVVKTGTRARKSSAGYDLTRLFVGSEGTLGVITEITLRLHPLPEAVSAAVCAFGSMSAA
ARTVIETIQIGVPIARVEFVDALAVRAINRNTQLGLAEAPTLFFEFHGTESGVREQAQQVEALAEQNGGRGFEWATRPED
RTRLWSARHHAYFSMLQLKPGCRAVTTDVCVPISQLAACVEETEADLNASSLPCPIVGHVGDGNFHVAILVDPTKPEELA
EAEALNDRIVERALRMGGTCTGEHGVGLHKMRFLAAEHGENAVDTMRAIKRALDPRNLMNPGKIFTIDA

Specific function: Unknown

COG id: COG0277

COG function: function code C; FAD/FMN-containing dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

Organism=Homo sapiens, GI37595756, Length=454, Percent_Identity=53.0837004405286, Blast_Score=491, Evalue=1e-139,
Organism=Homo sapiens, GI37595754, Length=477, Percent_Identity=50.5241090146751, Blast_Score=483, Evalue=1e-136,
Organism=Homo sapiens, GI119964728, Length=423, Percent_Identity=29.3144208037825, Blast_Score=166, Evalue=5e-41,
Organism=Homo sapiens, GI4501993, Length=463, Percent_Identity=26.7818574514039, Blast_Score=124, Evalue=1e-28,
Organism=Escherichia coli, GI1789351, Length=419, Percent_Identity=32.2195704057279, Blast_Score=207, Evalue=1e-54,
Organism=Escherichia coli, GI1787977, Length=499, Percent_Identity=28.4569138276553, Blast_Score=136, Evalue=3e-33,
Organism=Escherichia coli, GI48994907, Length=455, Percent_Identity=27.6923076923077, Blast_Score=118, Evalue=6e-28,
Organism=Escherichia coli, GI48994914, Length=176, Percent_Identity=32.3863636363636, Blast_Score=82, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI71992373, Length=438, Percent_Identity=46.5753424657534, Blast_Score=416, Evalue=1e-116,
Organism=Caenorhabditis elegans, GI71992381, Length=438, Percent_Identity=45.4337899543379, Blast_Score=397, Evalue=1e-111,
Organism=Caenorhabditis elegans, GI71992392, Length=383, Percent_Identity=49.0861618798956, Blast_Score=382, Evalue=1e-106,
Organism=Caenorhabditis elegans, GI17534361, Length=425, Percent_Identity=25.4117647058824, Blast_Score=128, Evalue=8e-30,
Organism=Caenorhabditis elegans, GI17556096, Length=473, Percent_Identity=23.8900634249471, Blast_Score=108, Evalue=4e-24,
Organism=Saccharomyces cerevisiae, GI6320027, Length=444, Percent_Identity=42.5675675675676, Blast_Score=339, Evalue=7e-94,
Organism=Saccharomyces cerevisiae, GI6320023, Length=471, Percent_Identity=25.2653927813163, Blast_Score=149, Evalue=9e-37,
Organism=Saccharomyces cerevisiae, GI6320764, Length=439, Percent_Identity=25.7403189066059, Blast_Score=147, Evalue=4e-36,
Organism=Drosophila melanogaster, GI18921117, Length=410, Percent_Identity=27.3170731707317, Blast_Score=154, Evalue=1e-37,
Organism=Drosophila melanogaster, GI24639277, Length=410, Percent_Identity=27.3170731707317, Blast_Score=154, Evalue=1e-37,
Organism=Drosophila melanogaster, GI24639275, Length=410, Percent_Identity=27.3170731707317, Blast_Score=154, Evalue=1e-37,
Organism=Drosophila melanogaster, GI24653753, Length=473, Percent_Identity=27.061310782241, Blast_Score=125, Evalue=4e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR016164
- InterPro:   IPR016168
- InterPro:   IPR004113
- InterPro:   IPR004490
- InterPro:   IPR006094
- InterPro:   IPR016171 [H]

Pfam domain/function: PF02913 FAD-oxidase_C; PF01565 FAD_binding_4 [H]

EC number: NA

Molecular weight: Translated: 50114; Mature: 50114

Theoretical pI: Translated: 6.06; Mature: 6.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHPAPPPRRPLPAAFVDALAARFGARMSVAQAVRAHHGRDESPFDPQLPDAVVFARSAD
CCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCH
DVRDAVLLCARYDVPLIPYGVGSSLEGHLLAVRGGVSLDLSEMNRVLSIDADDLTATVEP
HHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEECCCEEEHHHCCCEEEECCCCCEEECCC
GLTRRALNDALRDTGLFFPIDPGADASIGGMTATRASGTNAVRYGTMRENVLGLAAVLAD
CHHHHHHHHHHHHCCCEEECCCCCCCCCCCCEEECCCCCCCEEECCHHHHHHHHHHHHHC
GRVVKTGTRARKSSAGYDLTRLFVGSEGTLGVITEITLRLHPLPEAVSAAVCAFGSMSAA
CEEEECCCHHHHCCCCCCEEEEEECCCCCEEEEEEEEEEECCCHHHHHHHHHHHCCHHHH
ARTVIETIQIGVPIARVEFVDALAVRAINRNTQLGLAEAPTLFFEFHGTESGVREQAQQV
HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHH
EALAEQNGGRGFEWATRPEDRTRLWSARHHAYFSMLQLKPGCRAVTTDVCVPISQLAACV
HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHH
EETEADLNASSLPCPIVGHVGDGNFHVAILVDPTKPEELAEAEALNDRIVERALRMGGTC
HHHHCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCC
TGEHGVGLHKMRFLAAEHGENAVDTMRAIKRALDPRNLMNPGKIFTIDA
CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCEEEECC
>Mature Secondary Structure
MNHPAPPPRRPLPAAFVDALAARFGARMSVAQAVRAHHGRDESPFDPQLPDAVVFARSAD
CCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCH
DVRDAVLLCARYDVPLIPYGVGSSLEGHLLAVRGGVSLDLSEMNRVLSIDADDLTATVEP
HHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEECCCEEEHHHCCCEEEECCCCCEEECCC
GLTRRALNDALRDTGLFFPIDPGADASIGGMTATRASGTNAVRYGTMRENVLGLAAVLAD
CHHHHHHHHHHHHCCCEEECCCCCCCCCCCCEEECCCCCCCEEECCHHHHHHHHHHHHHC
GRVVKTGTRARKSSAGYDLTRLFVGSEGTLGVITEITLRLHPLPEAVSAAVCAFGSMSAA
CEEEECCCHHHHCCCCCCEEEEEECCCCCEEEEEEEEEEECCCHHHHHHHHHHHCCHHHH
ARTVIETIQIGVPIARVEFVDALAVRAINRNTQLGLAEAPTLFFEFHGTESGVREQAQQV
HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHH
EALAEQNGGRGFEWATRPEDRTRLWSARHHAYFSMLQLKPGCRAVTTDVCVPISQLAACV
HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHH
EETEADLNASSLPCPIVGHVGDGNFHVAILVDPTKPEELAEAEALNDRIVERALRMGGTC
HHHHCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCC
TGEHGVGLHKMRFLAAEHGENAVDTMRAIKRALDPRNLMNPGKIFTIDA
CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]