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The map label for this gene is scpB [H]

Identifier: 126452356

GI number: 126452356

Start: 1715964

End: 1717334

Strand: Direct

Name: scpB [H]

Synonym: BURPS1106A_1758

Alternate gene names: 126452356

Gene position: 1715964-1717334 (Clockwise)

Preceding gene: 126451925

Following gene: 126455204

Centisome position: 43.02

GC content: 70.68

Gene sequence:

>1371_bases
ATGAATACCCAAGAGGCGAAGATCGTCCTCGAGACTGCCTTGATCTGCGCGCAGGAACCGCTGAAGCTCGGCGATTTGCG
CAAGCTCTTTGCCGACGGCGTGTCGGCGGATACAGTCCGAACACTGCTCGAAGATCTGAAACAGGAATGGACCGGACGGG
GGGTCGAACTCGTCGCGCTCGCGTCGGGCTGGCGCTTCCAGAGCAAGCCGGCGATGCGCACGTATCTCGATCGCCTGCAT
CCCGAGAAGCCGCCGAAGTATTCGCGCGCCGTGCTGGAGACGCTCGCGATCATCGCGTACCGGCAGCCGGTCACGCGCGG
CGACATCGAGGAGATCCGCGGCGTCACGGTGAACACGCAGGTCGTCAAGCAGCTCGAGGACCGCGGCTGGATCGAAGTGA
TCGGTCATCGCGACGTGCCGGGCCGTCCGGCGCTCTACGCGACGACAAAACAGTTTCTCGACGACCTCGGCCTGAAGGCG
CTCGACGATCTGCCCGCGCTCGAGGAGCCGGCCGCGCATCTGGAGGCGAGCCTGCTCGCGCAGCAGGCGATCGATTTCCC
CGATGACGCGCGCGGCGACGGCGAAGCGCCTGCCGTCGCGCCCGAGACGGACGCCGCCGCCGCGCAGGCGGGCGAGGTTG
CCGAGCCGGCGAGCGATTCGGTGGTTTTGCGCAACGAAGATACGGCGCGCGCCGACGAGCCGCGGCAGGCGGACGCGGCG
CCGACGCGTGCCGACGAGGCTCGGCAGGAAGGGGCGACGGACGGCTTGGCGGCACGGATCGGCGATCCAGCCGATAATGA
CGCCGGGCGAGCCGATGTGGACGTCGACGCGGCGCCGGCTCTCGGCGAAGCCGATGCGCCGCGCGGCGGCGATGCTTCAG
GGCATGCGGCTCGCGAGATCGACTCGCGCGAGATGACGGAGCCGGCAGACGCCGGCGGCGAGGCGGCCGGCACGACCGCA
TCGCATACGCATGCGGTCGCGCCGTACGACCATGATGCGCAGAGCGCAGCGGACGCCGTCGCGGCGCCGCACGCCGGCGA
TGTAGCCGCTGATGGCGAGCGCGCCGAATCGCCCTCGGGGACGAACGAAAACGCAAACTACGTCGCGCAGCCGGACGCGG
AGCCGGCCGACGCGGCACACGCAGCAACACGCGAGGTGGCCGCCGACCCGGCGGCGGGCCGAGCGACGAAGGAAGACCAC
GGCGCGATCGGCGGCATCCCGCACGATGCCGAGCCGGTCCGAGCGCACGCGGAGGAGGCGTTGGACGACACGTCCGACAG
TCTCGCCGACGCCGTGCGCAGTGCAAGCGAGGCGGCCCCCGAGCACGAGCGGCAGGACGACGAGGACGCGCCTGCGAAGC
GTCGCGCCTGA

Upstream 100 bases:

>100_bases
CCATCAATATGACCGATCAGAATCGGGCGAGCGCGTCTTCCGTTCCTTTCGTCTGTTCGATTGATCCGGTTCGCTTGACC
ACAGGGTCTGACCTAGCTGC

Downstream 100 bases:

>100_bases
GACGGGCGGCCGAACCCCAGCCGTGCCCGCGACGGGCGCGAGACCTGACATTTTGAGGTTGTTTTGACTGATATCCACGA
CATCGATTCGTCCGAATCCG

Product: segregation and condensation protein B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 456; Mature: 456

Protein sequence:

>456_residues
MNTQEAKIVLETALICAQEPLKLGDLRKLFADGVSADTVRTLLEDLKQEWTGRGVELVALASGWRFQSKPAMRTYLDRLH
PEKPPKYSRAVLETLAIIAYRQPVTRGDIEEIRGVTVNTQVVKQLEDRGWIEVIGHRDVPGRPALYATTKQFLDDLGLKA
LDDLPALEEPAAHLEASLLAQQAIDFPDDARGDGEAPAVAPETDAAAAQAGEVAEPASDSVVLRNEDTARADEPRQADAA
PTRADEARQEGATDGLAARIGDPADNDAGRADVDVDAAPALGEADAPRGGDASGHAAREIDSREMTEPADAGGEAAGTTA
SHTHAVAPYDHDAQSAADAVAAPHAGDVAADGERAESPSGTNENANYVAQPDAEPADAAHAATREVAADPAAGRATKEDH
GAIGGIPHDAEPVRAHAEEALDDTSDSLADAVRSASEAAPEHERQDDEDAPAKRRA

Sequences:

>Translated_456_residues
MNTQEAKIVLETALICAQEPLKLGDLRKLFADGVSADTVRTLLEDLKQEWTGRGVELVALASGWRFQSKPAMRTYLDRLH
PEKPPKYSRAVLETLAIIAYRQPVTRGDIEEIRGVTVNTQVVKQLEDRGWIEVIGHRDVPGRPALYATTKQFLDDLGLKA
LDDLPALEEPAAHLEASLLAQQAIDFPDDARGDGEAPAVAPETDAAAAQAGEVAEPASDSVVLRNEDTARADEPRQADAA
PTRADEARQEGATDGLAARIGDPADNDAGRADVDVDAAPALGEADAPRGGDASGHAAREIDSREMTEPADAGGEAAGTTA
SHTHAVAPYDHDAQSAADAVAAPHAGDVAADGERAESPSGTNENANYVAQPDAEPADAAHAATREVAADPAAGRATKEDH
GAIGGIPHDAEPVRAHAEEALDDTSDSLADAVRSASEAAPEHERQDDEDAPAKRRA
>Mature_456_residues
MNTQEAKIVLETALICAQEPLKLGDLRKLFADGVSADTVRTLLEDLKQEWTGRGVELVALASGWRFQSKPAMRTYLDRLH
PEKPPKYSRAVLETLAIIAYRQPVTRGDIEEIRGVTVNTQVVKQLEDRGWIEVIGHRDVPGRPALYATTKQFLDDLGLKA
LDDLPALEEPAAHLEASLLAQQAIDFPDDARGDGEAPAVAPETDAAAAQAGEVAEPASDSVVLRNEDTARADEPRQADAA
PTRADEARQEGATDGLAARIGDPADNDAGRADVDVDAAPALGEADAPRGGDASGHAAREIDSREMTEPADAGGEAAGTTA
SHTHAVAPYDHDAQSAADAVAAPHAGDVAADGERAESPSGTNENANYVAQPDAEPADAAHAATREVAADPAAGRATKEDH
GAIGGIPHDAEPVRAHAEEALDDTSDSLADAVRSASEAAPEHERQDDEDAPAKRRA

Specific function: May participate in chromosomal partitioning during cell division (Potential) [H]

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005234
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04079 DUF387 [H]

EC number: NA

Molecular weight: Translated: 47812; Mature: 47812

Theoretical pI: Translated: 4.22; Mature: 4.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTQEAKIVLETALICAQEPLKLGDLRKLFADGVSADTVRTLLEDLKQEWTGRGVELVAL
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
ASGWRFQSKPAMRTYLDRLHPEKPPKYSRAVLETLAIIAYRQPVTRGDIEEIRGVTVNTQ
ECCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCHH
VVKQLEDRGWIEVIGHRDVPGRPALYATTKQFLDDLGLKALDDLPALEEPAAHLEASLLA
HHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHCHHHHHCCCCCCCHHHHHHHHHHH
QQAIDFPDDARGDGEAPAVAPETDAAAAQAGEVAEPASDSVVLRNEDTARADEPRQADAA
HHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCC
PTRADEARQEGATDGLAARIGDPADNDAGRADVDVDAAPALGEADAPRGGDASGHAAREI
CCCHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
DSREMTEPADAGGEAAGTTASHTHAVAPYDHDAQSAADAVAAPHAGDVAADGERAESPSG
CHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
TNENANYVAQPDAEPADAAHAATREVAADPAAGRATKEDHGAIGGIPHDAEPVRAHAEEA
CCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHH
LDDTSDSLADAVRSASEAAPEHERQDDEDAPAKRRA
HHCCHHHHHHHHHHHHHCCCCHHCCCCCCCCHHCCC
>Mature Secondary Structure
MNTQEAKIVLETALICAQEPLKLGDLRKLFADGVSADTVRTLLEDLKQEWTGRGVELVAL
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
ASGWRFQSKPAMRTYLDRLHPEKPPKYSRAVLETLAIIAYRQPVTRGDIEEIRGVTVNTQ
ECCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCHH
VVKQLEDRGWIEVIGHRDVPGRPALYATTKQFLDDLGLKALDDLPALEEPAAHLEASLLA
HHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHCHHHHHCCCCCCCHHHHHHHHHHH
QQAIDFPDDARGDGEAPAVAPETDAAAAQAGEVAEPASDSVVLRNEDTARADEPRQADAA
HHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCC
PTRADEARQEGATDGLAARIGDPADNDAGRADVDVDAAPALGEADAPRGGDASGHAAREI
CCCHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
DSREMTEPADAGGEAAGTTASHTHAVAPYDHDAQSAADAVAAPHAGDVAADGERAESPSG
CHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
TNENANYVAQPDAEPADAAHAATREVAADPAAGRATKEDHGAIGGIPHDAEPVRAHAEEA
CCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHH
LDDTSDSLADAVRSASEAAPEHERQDDEDAPAKRRA
HHCCHHHHHHHHHHHHHCCCCHHCCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]