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The map label for this gene is ydgJ [H]

Identifier: 126452354

GI number: 126452354

Start: 3895667

End: 3896719

Strand: Direct

Name: ydgJ [H]

Synonym: BURPS1106A_3994

Alternate gene names: 126452354

Gene position: 3895667-3896719 (Clockwise)

Preceding gene: 126453193

Following gene: 126453262

Centisome position: 97.67

GC content: 70.09

Gene sequence:

>1053_bases
ATGTCGTCAACGCTCAAGATTGGTTTGATGGGTTTCGGTTTTGCAGGCGCGACGTTCCATGCGCCCGTCATCACGCACAG
CGGCCGCACGCGGCTCGCCGCGATCGCGACCGGGCAGCCGGAGCGCGCGACCGCCGCGTATCCGGAGGCGGCCGTCGTGC
CGGATCTCGACGCGCTCGCCGCGCGCGATGATGTCGAGTGCGTCGTGATCGCGACGCCCAACGATACGCATGTCGACCTG
GCGAAGCGGGCGCTCGAAGCGGGCAAGCACGTGGTCGTCGACAAGCCCGTCGCGCTGTCGGCCGCCGATGCGCTCGTGCT
CGCGCGCCTCGCGGCCGCGCGCGGCCGCGTGTTCGCGCCGTTCCACAACCGCCGCTGGGACGGCGATTTCCTGACGGTGC
GCCAGCTCGTCGAAAGCGGCGAGCTCGGCCGCATCGTCTGTTTCGAATCGCATTTCGACCGCTTCCGCCCGCACGTGCGC
ACGCGCTGGCGCGAGGAAGCGGCGCGCGGCGGCGGGCTGCTATTCGATCTCGGCCCGCACCTGATCGACCAGGCGCTCGC
GCTGTTCGGGCCGCCGGAGACGGTGAGCGCGACGGTCAAGACCCGTCGCGACGGGGGCGACGCGCCCGATTTCGTTCACC
TGCAGCTCGGCTATCCGGACAAGGACGTCGTGCTGCACGCGAGCGCGCTCGCGGCGATCGAACCCGCGCGCTTCACCGTG
CTCGGCACGCAGGGCGGTTATCAGAAGCACGGGCTCGACACGCAGGAAGATCAATTGAAGGCCGGCCTCACGCCGGACGA
CGTCGAATTCGGCGGCGGCAACCCGCCGGGCGTGCTGCGCGGACTCGACGGCGAGCTCGAAGTCGAGCGGCCCGTGCCGA
CACTCGACGGGCAATACGCGGAGTTCTATCGTGCGCTCGCGGCGTCGATTCACGATGGGGCGCCGTTCCCCGTCGCGCCG
CAGGACGCCGTCGACGTAATGACGATCATCGAGACCGCGATGCGCAGCGAACGCGAAGGGCGGCGCCTGCCGTTCGTGCG
CGAAGCGGTCTGA

Upstream 100 bases:

>100_bases
ACAAACCGTTCCGCCCCCATTCGTCATGCCACAATAGGCATCCGTCGCCGTGCGGCGTCCGAGCCGCAGCGCCCCGTTTC
GCAAGCAGACAGGATCGTTC

Downstream 100 bases:

>100_bases
GCGGGCAGCGCACCGCCGGTGCGCTCACGCGCGGCTCGTGCCGCCTGGACTTTGATCGCCGATAAACGTCAACAAACGGT
TACAAACAATCCGGAAACGA

Product: oxidoreductase YdgJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 350; Mature: 349

Protein sequence:

>350_residues
MSSTLKIGLMGFGFAGATFHAPVITHSGRTRLAAIATGQPERATAAYPEAAVVPDLDALAARDDVECVVIATPNDTHVDL
AKRALEAGKHVVVDKPVALSAADALVLARLAAARGRVFAPFHNRRWDGDFLTVRQLVESGELGRIVCFESHFDRFRPHVR
TRWREEAARGGGLLFDLGPHLIDQALALFGPPETVSATVKTRRDGGDAPDFVHLQLGYPDKDVVLHASALAAIEPARFTV
LGTQGGYQKHGLDTQEDQLKAGLTPDDVEFGGGNPPGVLRGLDGELEVERPVPTLDGQYAEFYRALAASIHDGAPFPVAP
QDAVDVMTIIETAMRSEREGRRLPFVREAV

Sequences:

>Translated_350_residues
MSSTLKIGLMGFGFAGATFHAPVITHSGRTRLAAIATGQPERATAAYPEAAVVPDLDALAARDDVECVVIATPNDTHVDL
AKRALEAGKHVVVDKPVALSAADALVLARLAAARGRVFAPFHNRRWDGDFLTVRQLVESGELGRIVCFESHFDRFRPHVR
TRWREEAARGGGLLFDLGPHLIDQALALFGPPETVSATVKTRRDGGDAPDFVHLQLGYPDKDVVLHASALAAIEPARFTV
LGTQGGYQKHGLDTQEDQLKAGLTPDDVEFGGGNPPGVLRGLDGELEVERPVPTLDGQYAEFYRALAASIHDGAPFPVAP
QDAVDVMTIIETAMRSEREGRRLPFVREAV
>Mature_349_residues
SSTLKIGLMGFGFAGATFHAPVITHSGRTRLAAIATGQPERATAAYPEAAVVPDLDALAARDDVECVVIATPNDTHVDLA
KRALEAGKHVVVDKPVALSAADALVLARLAAARGRVFAPFHNRRWDGDFLTVRQLVESGELGRIVCFESHFDRFRPHVRT
RWREEAARGGGLLFDLGPHLIDQALALFGPPETVSATVKTRRDGGDAPDFVHLQLGYPDKDVVLHASALAAIEPARFTVL
GTQGGYQKHGLDTQEDQLKAGLTPDDVEFGGGNPPGVLRGLDGELEVERPVPTLDGQYAEFYRALAASIHDGAPFPVAPQ
DAVDVMTIIETAMRSEREGRRLPFVREAV

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Escherichia coli, GI87081947, Length=338, Percent_Identity=43.491124260355, Blast_Score=280, Evalue=8e-77,
Organism=Escherichia coli, GI1789848, Length=331, Percent_Identity=34.441087613293, Blast_Score=188, Evalue=4e-49,
Organism=Escherichia coli, GI87082405, Length=259, Percent_Identity=24.3243243243243, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI1787574, Length=213, Percent_Identity=29.1079812206573, Blast_Score=70, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6323975, Length=261, Percent_Identity=24.5210727969349, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24581117, Length=153, Percent_Identity=32.0261437908497, Blast_Score=70, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 37655; Mature: 37524

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSTLKIGLMGFGFAGATFHAPVITHSGRTRLAAIATGQPERATAAYPEAAVVPDLDALA
CCCCEEEEEEEECCCCCEEECCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHH
ARDDVECVVIATPNDTHVDLAKRALEAGKHVVVDKPVALSAADALVLARLAAARGRVFAP
CCCCCCEEEEECCCCCHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHCCCEEEC
FHNRRWDGDFLTVRQLVESGELGRIVCFESHFDRFRPHVRTRWREEAARGGGLLFDLGPH
CCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHCHHHHHHHHHHHHCCCCEEEECCHH
LIDQALALFGPPETVSATVKTRRDGGDAPDFVHLQLGYPDKDVVLHASALAAIEPARFTV
HHHHHHHHCCCCCHHEEEEEECCCCCCCCCEEEEEECCCCCCEEEEHHHHHHCCCCEEEE
LGTQGGYQKHGLDTQEDQLKAGLTPDDVEFGGGNPPGVLRGLDGELEVERPVPTLDGQYA
EECCCCCHHCCCCCCHHHHHCCCCCCCCCCCCCCCCHHEECCCCCEEECCCCCCCCCHHH
EFYRALAASIHDGAPFPVAPQDAVDVMTIIETAMRSEREGRRLPFVREAV
HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHCC
>Mature Secondary Structure 
SSTLKIGLMGFGFAGATFHAPVITHSGRTRLAAIATGQPERATAAYPEAAVVPDLDALA
CCCEEEEEEEECCCCCEEECCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHH
ARDDVECVVIATPNDTHVDLAKRALEAGKHVVVDKPVALSAADALVLARLAAARGRVFAP
CCCCCCEEEEECCCCCHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHCCCEEEC
FHNRRWDGDFLTVRQLVESGELGRIVCFESHFDRFRPHVRTRWREEAARGGGLLFDLGPH
CCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHCHHHHHHHHHHHHCCCCEEEECCHH
LIDQALALFGPPETVSATVKTRRDGGDAPDFVHLQLGYPDKDVVLHASALAAIEPARFTV
HHHHHHHHCCCCCHHEEEEEECCCCCCCCCEEEEEECCCCCCEEEEHHHHHHCCCCEEEE
LGTQGGYQKHGLDTQEDQLKAGLTPDDVEFGGGNPPGVLRGLDGELEVERPVPTLDGQYA
EECCCCCHHCCCCCCHHHHHCCCCCCCCCCCCCCCCHHEECCCCCEEECCCCCCCCCHHH
EFYRALAASIHDGAPFPVAPQDAVDVMTIIETAMRSEREGRRLPFVREAV
HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]