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The map label for this gene is ychE [H]

Identifier: 126452261

GI number: 126452261

Start: 3633643

End: 3634263

Strand: Reverse

Name: ychE [H]

Synonym: BURPS1106A_3721

Alternate gene names: 126452261

Gene position: 3634263-3633643 (Counterclockwise)

Preceding gene: 126454968

Following gene: 126454995

Centisome position: 91.12

GC content: 64.09

Gene sequence:

>621_bases
ATGGACCTGCTCAAATCGTTCATTTCCCTGCTTGCGCTGATCAATCCGCTCGGCGCGGTGCCGTTTTTCCTGAGCCTCAC
CGCCCAGCAGACGGAAGCCGAGCGGCGGCACACGATCCGCATCGCGGCCGTTTCGGTGTTCTGCGTGATCGCGGTGACGA
CGCTGCTCGGCCAGCAGATCATCGATTTCTTCGGGATCTCGGTGGGCTCGCTCGAAGTGGGCGGCGGGATCATCATGCTG
CTGATGGCGATCTCGATGCTCAACGCGCAGATCGGCAACACCCGCTCGACGCCCGAGGAGCGCGACGAGGCGGAGTCGAA
GAACAGCATCGCCGTCGTGCCGCTCGCGATCCCGCTCCTGACGGGCCCGGGCTCGATCAGCACGGTGATCGTTTACGCGG
CGAACGCCCGGCATTGGTACGACCGGCTCGGGCTCGTCGCGATCGGCGCGGCGCTCGCGCTCATCTGTTTTTTCGCGATG
CGGCTCGCCGAGCCGATCGCGCACTGGATCGGCCGCACCGGCATCAACATCGTCACGCGTCTGATGGGATTGATGCTGTC
GGCGCTGGCGGTGGAATTCATCGTCGACGGACTGAAGGCATTATTGCCTGCACTGACATGA

Upstream 100 bases:

>100_bases
GAGCGCGCGGCGGGGCAGATTCCGTCGACGAAGGGCAGCCTCTGATTCCCGGCCGCAGCGAACACGACCCCACTGGCCGC
GGCGGCTGCGCCGGCTTGCG

Downstream 100 bases:

>100_bases
AAACTTCGATTGCAATTGTGGATTACGGAATGGGCAACCTGCGCTCGGTCGCGCAGGCGCTCATGAAGGCGGAGCCGGCG
GCCGACGTGAAGATCGTCGA

Product: MarC membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MDLLKSFISLLALINPLGAVPFFLSLTAQQTEAERRHTIRIAAVSVFCVIAVTTLLGQQIIDFFGISVGSLEVGGGIIML
LMAISMLNAQIGNTRSTPEERDEAESKNSIAVVPLAIPLLTGPGSISTVIVYAANARHWYDRLGLVAIGAALALICFFAM
RLAEPIAHWIGRTGINIVTRLMGLMLSALAVEFIVDGLKALLPALT

Sequences:

>Translated_206_residues
MDLLKSFISLLALINPLGAVPFFLSLTAQQTEAERRHTIRIAAVSVFCVIAVTTLLGQQIIDFFGISVGSLEVGGGIIML
LMAISMLNAQIGNTRSTPEERDEAESKNSIAVVPLAIPLLTGPGSISTVIVYAANARHWYDRLGLVAIGAALALICFFAM
RLAEPIAHWIGRTGINIVTRLMGLMLSALAVEFIVDGLKALLPALT
>Mature_206_residues
MDLLKSFISLLALINPLGAVPFFLSLTAQQTEAERRHTIRIAAVSVFCVIAVTTLLGQQIIDFFGISVGSLEVGGGIIML
LMAISMLNAQIGNTRSTPEERDEAESKNSIAVVPLAIPLLTGPGSISTVIVYAANARHWYDRLGLVAIGAALALICFFAM
RLAEPIAHWIGRTGINIVTRLMGLMLSALAVEFIVDGLKALLPALT

Specific function: Unknown

COG id: COG2095

COG function: function code U; Multiple antibiotic transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0056 (marC) family [H]

Homologues:

Organism=Escherichia coli, GI1787494, Length=202, Percent_Identity=40.0990099009901, Blast_Score=162, Evalue=2e-41,
Organism=Escherichia coli, GI1787809, Length=195, Percent_Identity=34.8717948717949, Blast_Score=103, Evalue=6e-24,
Organism=Escherichia coli, GI1789842, Length=202, Percent_Identity=28.7128712871287, Blast_Score=80, Evalue=7e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002771 [H]

Pfam domain/function: PF01914 MarC [H]

EC number: NA

Molecular weight: Translated: 21954; Mature: 21954

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLLKSFISLLALINPLGAVPFFLSLTAQQTEAERRHTIRIAAVSVFCVIAVTTLLGQQI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IDFFGISVGSLEVGGGIIMLLMAISMLNAQIGNTRSTPEERDEAESKNSIAVVPLAIPLL
HHHHCCCCCCEECCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCEEEEEHHHHHC
TGPGSISTVIVYAANARHWYDRLGLVAIGAALALICFFAMRLAEPIAHWIGRTGINIVTR
CCCCCHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
LMGLMLSALAVEFIVDGLKALLPALT
HHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDLLKSFISLLALINPLGAVPFFLSLTAQQTEAERRHTIRIAAVSVFCVIAVTTLLGQQI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IDFFGISVGSLEVGGGIIMLLMAISMLNAQIGNTRSTPEERDEAESKNSIAVVPLAIPLL
HHHHCCCCCCEECCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCEEEEEHHHHHC
TGPGSISTVIVYAANARHWYDRLGLVAIGAALALICFFAMRLAEPIAHWIGRTGINIVTR
CCCCCHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
LMGLMLSALAVEFIVDGLKALLPALT
HHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2015910; 9097039; 9278503 [H]