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The map label for this gene is ycfJ [C]

Identifier: 126452238

GI number: 126452238

Start: 2608495

End: 2609220

Strand: Direct

Name: ycfJ [C]

Synonym: BURPS1106A_2647

Alternate gene names: 126452238

Gene position: 2608495-2609220 (Clockwise)

Preceding gene: 126453065

Following gene: 126453545

Centisome position: 65.4

GC content: 72.04

Gene sequence:

>726_bases
ATGGACAACCAGAACACCACCACGCAACAACGTCAGCGCCTTCATCCGCTCGTCGCGACCGCGGCGGGCGCCGTCATCGT
CGCGAGCCTCGCGGCCACGGCCGCGATCACGGGCGTATTCCCGAAGGCGAGCAGCACCAACGCGCAGAACGCGCAGACCC
AGGCCGCGTTGATCGCGTCGCAGCCGGCCGTCGATACGGCCGCCGCGGCGAGCGCCGCGCTCGCCGCGCAAGCCGCGCAG
CAGGCGGCCCAGCAGCCGCAGCAGACGGTCGCCCAAGCCGCGCCGAAGCCGACCTCGCATCAGACGACGCGCCACCATCA
CAAGACGTCCGCCGCACCGCAGCCGCCGCAATATGCGCAGCAGCCGTATCCGCAGCAGCAGCAATCGACCTACTGCGCGA
GCTGCGGCACCGTTGCGTCGATCGTGCCGGTGCGCACGGCGGGCACGAGCTCGGGGCTCGGCGCGATCGGCGGCGCGGCC
GCGGGCGGCCTGGTCGGCAACCAGTTCGGCCGCGGCAACGGCCGCACCGCGATGACGATCATCGGCGCGCTCGGCGGCGG
CCTCGCCGGCAACGCGGTCGAGAAGCAGGTTCGCAGCGAAACCGATTATCAGGTCCAGGTACAGATGCAGGACGGCTCGA
CGCGCACGTTCACCTACCACAACCCGCCGCCGTTCGGCCAGGGCCAGCGCGTGCGCGTGGAGAACGGCACGCTCGTCGGC
GCGTGA

Upstream 100 bases:

>100_bases
CGCAGCGAATCGTTACAACTTGAAACGGTGCGCCCGTGGCGTTTGATCGACACTAGCTCCGGAAAATAACGCACCGCCGC
GTGCGCCAGGAGAGTCGAAA

Downstream 100 bases:

>100_bases
CACCGGGCGCGGCGGGACGGCCGCGCGCCCCTCGCCGTCCCGGCGGCGCCGGCTTTGCCTGCCGCCCGTCGCGCAGGCAT
GAAAAAACGGCTCGTGAGTG

Product: surface antigen family protein

Products: NA

Alternate protein names: Outer Membrane Lipoprotein

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MDNQNTTTQQRQRLHPLVATAAGAVIVASLAATAAITGVFPKASSTNAQNAQTQAALIASQPAVDTAAAASAALAAQAAQ
QAAQQPQQTVAQAAPKPTSHQTTRHHHKTSAAPQPPQYAQQPYPQQQQSTYCASCGTVASIVPVRTAGTSSGLGAIGGAA
AGGLVGNQFGRGNGRTAMTIIGALGGGLAGNAVEKQVRSETDYQVQVQMQDGSTRTFTYHNPPPFGQGQRVRVENGTLVG
A

Sequences:

>Translated_241_residues
MDNQNTTTQQRQRLHPLVATAAGAVIVASLAATAAITGVFPKASSTNAQNAQTQAALIASQPAVDTAAAASAALAAQAAQ
QAAQQPQQTVAQAAPKPTSHQTTRHHHKTSAAPQPPQYAQQPYPQQQQSTYCASCGTVASIVPVRTAGTSSGLGAIGGAA
AGGLVGNQFGRGNGRTAMTIIGALGGGLAGNAVEKQVRSETDYQVQVQMQDGSTRTFTYHNPPPFGQGQRVRVENGTLVG
A
>Mature_241_residues
MDNQNTTTQQRQRLHPLVATAAGAVIVASLAATAAITGVFPKASSTNAQNAQTQAALIASQPAVDTAAAASAALAAQAAQ
QAAQQPQQTVAQAAPKPTSHQTTRHHHKTSAAPQPPQYAQQPYPQQQQSTYCASCGTVASIVPVRTAGTSSGLGAIGGAA
AGGLVGNQFGRGNGRTAMTIIGALGGGLAGNAVEKQVRSETDYQVQVQMQDGSTRTFTYHNPPPFGQGQRVRVENGTLVG
A

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24474; Mature: 24474

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNQNTTTQQRQRLHPLVATAAGAVIVASLAATAAITGVFPKASSTNAQNAQTQAALIAS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHC
QPAVDTAAAASAALAAQAAQQAAQQPQQTVAQAAPKPTSHQTTRHHHKTSAAPQPPQYAQ
CCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCHHHC
QPYPQQQQSTYCASCGTVASIVPVRTAGTSSGLGAIGGAAAGGLVGNQFGRGNGRTAMTI
CCCCCHHHHHHHHHCCCHHHHEEEECCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCHHHH
IGALGGGLAGNAVEKQVRSETDYQVQVQMQDGSTRTFTYHNPPPFGQGQRVRVENGTLVG
HHHHCCCCCCHHHHHHHHCCCCEEEEEEEECCCEEEEEECCCCCCCCCCEEEEECCEEEC
A
C
>Mature Secondary Structure
MDNQNTTTQQRQRLHPLVATAAGAVIVASLAATAAITGVFPKASSTNAQNAQTQAALIAS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHC
QPAVDTAAAASAALAAQAAQQAAQQPQQTVAQAAPKPTSHQTTRHHHKTSAAPQPPQYAQ
CCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCHHHC
QPYPQQQQSTYCASCGTVASIVPVRTAGTSSGLGAIGGAAAGGLVGNQFGRGNGRTAMTI
CCCCCHHHHHHHHHCCCHHHHEEEECCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCHHHH
IGALGGGLAGNAVEKQVRSETDYQVQVQMQDGSTRTFTYHNPPPFGQGQRVRVENGTLVG
HHHHCCCCCCHHHHHHHHCCCCEEEEEEEECCCEEEEEECCCCCCCCCCEEEEECCEEEC
A
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA