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The map label for this gene is exbD1 [H]

Identifier: 126452234

GI number: 126452234

Start: 3361473

End: 3362003

Strand: Reverse

Name: exbD1 [H]

Synonym: BURPS1106A_3451

Alternate gene names: 126452234

Gene position: 3362003-3361473 (Counterclockwise)

Preceding gene: 126455098

Following gene: 126451947

Centisome position: 84.29

GC content: 74.01

Gene sequence:

>531_bases
ATGGCATTCGGCGGACTCGATCACCAGCACACGTCGCAGCCGATGGCGGACATCAACATGACGCCGCTCATCGACGTGAT
GCTCGTGCTGCTCGTCATCTTCATCATCACCGCGCCGCTCTTGACGCATGCGATCCGGCTCGATTTGCCGAAGGTCGCGG
CCGCGCCCGCGCGCGAGACGCCGGAGACGATCACGGTGTCGATCGACGCGGCGGGCAAGCTGTACTGGAACGACGCGCCC
GTCGCGCTCGACGCGCTCGCCGCGCGGTTGCGCGACGCGGCGGCGGCAGGCCAGGACCCGGAGCTGCATCTGCGCGCCGC
GCGCGACACCCGCTACGACACGATCGCGCAGGTGATGGGCGCCGCGCAGCAGGCGGGCGTCGCGCGGATCGGCTTCGTCA
CCGACGCGCCCGCGCCGCCGGCTCGGCCGTCGCCGCCGCGCGGCGCACCGCCTTCGCTTTCGCCGCCGGCGTCGCCCCAG
GCGCAGCCGCAGCCACCGTCGCCGCCGCCGTCGCCCGCCGCGTCGCGCTGA

Upstream 100 bases:

>100_bases
GTGTTCGTCTGCGGCGAGCCGGCCGCCGCCGCGGCCGACGATGCGGCCACCGCGGCCTAGCCGGCTGCGTCGATCCGATA
CACCCGGCGAGGAGGGCGGC

Downstream 100 bases:

>100_bases
TCGGCGGTTCGCGGCCGCCCGGACGGCGTGGCCGGCCGGCGCGGACGGTATAATCGACGTTTTCCCCGCGCCGCCCCCGG
CCGCCGGGGAAGCGCGACTT

Product: ExbD/TolR family transport energizing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MAFGGLDHQHTSQPMADINMTPLIDVMLVLLVIFIITAPLLTHAIRLDLPKVAAAPARETPETITVSIDAAGKLYWNDAP
VALDALAARLRDAAAAGQDPELHLRAARDTRYDTIAQVMGAAQQAGVARIGFVTDAPAPPARPSPPRGAPPSLSPPASPQ
AQPQPPSPPPSPAASR

Sequences:

>Translated_176_residues
MAFGGLDHQHTSQPMADINMTPLIDVMLVLLVIFIITAPLLTHAIRLDLPKVAAAPARETPETITVSIDAAGKLYWNDAP
VALDALAARLRDAAAAGQDPELHLRAARDTRYDTIAQVMGAAQQAGVARIGFVTDAPAPPARPSPPRGAPPSLSPPASPQ
AQPQPPSPPPSPAASR
>Mature_175_residues
AFGGLDHQHTSQPMADINMTPLIDVMLVLLVIFIITAPLLTHAIRLDLPKVAAAPARETPETITVSIDAAGKLYWNDAPV
ALDALAARLRDAAAAGQDPELHLRAARDTRYDTIAQVMGAAQQAGVARIGFVTDAPAPPARPSPPRGAPPSLSPPASPQA
QPQPPSPPPSPAASR

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=124, Percent_Identity=33.8709677419355, Blast_Score=80, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 18328; Mature: 18197

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFGGLDHQHTSQPMADINMTPLIDVMLVLLVIFIITAPLLTHAIRLDLPKVAAAPARET
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCC
PETITVSIDAAGKLYWNDAPVALDALAARLRDAAAAGQDPELHLRAARDTRYDTIAQVMG
CCEEEEEECCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHH
AAQQAGVARIGFVTDAPAPPARPSPPRGAPPSLSPPASPQAQPQPPSPPPSPAASR
HHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AFGGLDHQHTSQPMADINMTPLIDVMLVLLVIFIITAPLLTHAIRLDLPKVAAAPARET
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCC
PETITVSIDAAGKLYWNDAPVALDALAARLRDAAAAGQDPELHLRAARDTRYDTIAQVMG
CCEEEEEECCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHH
AAQQAGVARIGFVTDAPAPPARPSPPRGAPPSLSPPASPQAQPQPPSPPPSPAASR
HHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371459 [H]