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The map label for this gene is rsmD [H]

Identifier: 126452215

GI number: 126452215

Start: 549914

End: 550540

Strand: Direct

Name: rsmD [H]

Synonym: BURPS1106A_0579

Alternate gene names: 126452215

Gene position: 549914-550540 (Clockwise)

Preceding gene: 126453999

Following gene: 126453101

Centisome position: 13.79

GC content: 72.89

Gene sequence:

>627_bases
ATGTCCCGTTCCTCTCCGGCGCGGCCGCAGGCGCAGCGAGCCCCGGCCGCCGGCCGCGGCAAGCCGCACACGATCCGCAT
CATCGGCGGCGACTGGAAGCGCACGCCGCTTCCGGTGCTCGATCTGGACGGCTTGCGCCCGACCCCCGATCGCGTGCGCG
AGACGCTCTTCAACTGGCTCGGCCAGGATCTCGAAGGGCGGCGCTGCCTCGATCTGTTCGCGGGCAGCGGCGCGCTCGGC
TTCGAGGCGGCGTCGCGCGGCGCGGCGAGCGTCGTGATGGTCGAGCGCCATCCGCGCGCCGCGCAGCAACTGCGCGCGCT
GAAGGACAAGCTCGCCGCCCGCGCGATCGAGATCGCGGAAGCCGATGCGCTGCGCATCGCGGCGGGCCTCGCGCCGCGCT
CGTTCGACGTCGTGTTCGTCGACCCGCCGTTCGGCGACGCGGCCGCGTTCGCGCGCGCGCTCGATCTCGCGCCGAATCTC
GTCGCGCCGGGCGGTTTTCTGTACGTCGAGACGGGCGCGCCGCTCGATCCGTCCGCGCACGCGTCGCTCGCCGGCTGGCA
GGTGGCGCGGCGCGGCAAGGCGGGCGCCGTCCACTATCATTTGCTGCAACGCGAAAATGATGAATAA

Upstream 100 bases:

>100_bases
ACGGCGCGCCGCTTGTGGTAACGTGCGCGTCATCGCGGTGCCTCGCGCCGTTTCAGCCGGTTCATTCCGTTTCCAACGCT
TCCGTATTGAATTCTTTCGT

Downstream 100 bases:

>100_bases
TGCGCGTTCCAAACGAGGCGCCGCGTGCAGTCGCGACGTGCGCCCATGTCGGCGGCCGCGCGCGACGCGCCCGGCCGTGA
CCCCAATTGCTCGATGACAG

Product: putative methyltransferase

Products: NA

Alternate protein names: 16S rRNA m2G966 methyltransferase; rRNA (guanine-N(2)-)-methyltransferase [H]

Number of amino acids: Translated: 208; Mature: 207

Protein sequence:

>208_residues
MSRSSPARPQAQRAPAAGRGKPHTIRIIGGDWKRTPLPVLDLDGLRPTPDRVRETLFNWLGQDLEGRRCLDLFAGSGALG
FEAASRGAASVVMVERHPRAAQQLRALKDKLAARAIEIAEADALRIAAGLAPRSFDVVFVDPPFGDAAAFARALDLAPNL
VAPGGFLYVETGAPLDPSAHASLAGWQVARRGKAGAVHYHLLQRENDE

Sequences:

>Translated_208_residues
MSRSSPARPQAQRAPAAGRGKPHTIRIIGGDWKRTPLPVLDLDGLRPTPDRVRETLFNWLGQDLEGRRCLDLFAGSGALG
FEAASRGAASVVMVERHPRAAQQLRALKDKLAARAIEIAEADALRIAAGLAPRSFDVVFVDPPFGDAAAFARALDLAPNL
VAPGGFLYVETGAPLDPSAHASLAGWQVARRGKAGAVHYHLLQRENDE
>Mature_207_residues
SRSSPARPQAQRAPAAGRGKPHTIRIIGGDWKRTPLPVLDLDGLRPTPDRVRETLFNWLGQDLEGRRCLDLFAGSGALGF
EAASRGAASVVMVERHPRAAQQLRALKDKLAARAIEIAEADALRIAAGLAPRSFDVVFVDPPFGDAAAFARALDLAPNLV
APGGFLYVETGAPLDPSAHASLAGWQVARRGKAGAVHYHLLQRENDE

Specific function: Specifically methylates the guanosine in position 966 of 16S rRNA in the assembled 30S particle [H]

COG id: COG0742

COG function: function code L; N6-adenine-specific methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmD family [H]

Homologues:

Organism=Escherichia coli, GI1789875, Length=191, Percent_Identity=41.8848167539267, Blast_Score=119, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR004398 [H]

Pfam domain/function: PF03602 Cons_hypoth95 [H]

EC number: =2.1.1.171 [H]

Molecular weight: Translated: 22250; Mature: 22118

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRSSPARPQAQRAPAAGRGKPHTIRIIGGDWKRTPLPVLDLDGLRPTPDRVRETLFNWL
CCCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCCCCCEEECCCCCCCHHHHHHHHHHHH
GQDLEGRRCLDLFAGSGALGFEAASRGAASVVMVERHPRAAQQLRALKDKLAARAIEIAE
CCCCCCCEEEHHHCCCCCCCHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
ADALRIAAGLAPRSFDVVFVDPPFGDAAAFARALDLAPNLVAPGGFLYVETGAPLDPSAH
HHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCC
ASLAGWQVARRGKAGAVHYHLLQRENDE
CHHHHHHHHHCCCCCEEEEEEEECCCCC
>Mature Secondary Structure 
SRSSPARPQAQRAPAAGRGKPHTIRIIGGDWKRTPLPVLDLDGLRPTPDRVRETLFNWL
CCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCCCCCEEECCCCCCCHHHHHHHHHHHH
GQDLEGRRCLDLFAGSGALGFEAASRGAASVVMVERHPRAAQQLRALKDKLAARAIEIAE
CCCCCCCEEEHHHCCCCCCCHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
ADALRIAAGLAPRSFDVVFVDPPFGDAAAFARALDLAPNLVAPGGFLYVETGAPLDPSAH
HHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCC
ASLAGWQVARRGKAGAVHYHLLQRENDE
CHHHHHHHHHCCCCCEEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]