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The map label for this gene is cspA [H]

Identifier: 126452091

GI number: 126452091

Start: 3524086

End: 3524289

Strand: Direct

Name: cspA [H]

Synonym: BURPS1106A_3622

Alternate gene names: 126452091

Gene position: 3524086-3524289 (Clockwise)

Preceding gene: 126454221

Following gene: 126455179

Centisome position: 88.36

GC content: 56.86

Gene sequence:

>204_bases
ATGGCAACCGGTACCGTCAAGTGGTTCAACGACGCCAAGGGTTTTGGTTTCATCACGCCGGAAGGCGGCGGCGAAGATCT
CTTCGCGCACTTCTCGGAAATCCGCGTCGACGGCTTCAAGACGCTGCAAGAGAACCAGAAGGTCGAGTTTGAAGTAAAGA
CCGGCCCGAAGGGTCTGCAGGCAGCGAACATCAAGCCGCTGTAA

Upstream 100 bases:

>100_bases
TTCGCCCATCAACGGTACTCCGGTTGGTCCCATTACCCCTTCCTTGATTTTCATGCGCTCCCCGGGCTTTGGCCCTGTTT
TACATTTTTAGGAACAAGTT

Downstream 100 bases:

>100_bases
GCGCAGCGCGAGATTTCGCAGCACAGTAGAAAGCCCCGCTTCGGCGGGGCTTTTTGTTTGTCCGGGCTTGCGGCGCGCAT
TCGGCCGCGCGCTCGCGCGG

Product: cold-shock domain-contain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 67; Mature: 66

Protein sequence:

>67_residues
MATGTVKWFNDAKGFGFITPEGGGEDLFAHFSEIRVDGFKTLQENQKVEFEVKTGPKGLQAANIKPL

Sequences:

>Translated_67_residues
MATGTVKWFNDAKGFGFITPEGGGEDLFAHFSEIRVDGFKTLQENQKVEFEVKTGPKGLQAANIKPL
>Mature_66_residues
ATGTVKWFNDAKGFGFITPEGGGEDLFAHFSEIRVDGFKTLQENQKVEFEVKTGPKGLQAANIKPL

Specific function: Inhibits DNA Replication At Both Initiation And Elongation Steps, Most Probably By Binding To The Opened, Single- Stranded Regions At Replication Forks. Plays A Regulatory Role In Chromosomal Replication In Nutrient-Depleted Cells. [C]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1787107, Length=67, Percent_Identity=62.6865671641791, Blast_Score=96, Evalue=5e-22,
Organism=Escherichia coli, GI1786841, Length=64, Percent_Identity=62.5, Blast_Score=87, Evalue=1e-19,
Organism=Escherichia coli, GI1789979, Length=65, Percent_Identity=56.9230769230769, Blast_Score=81, Evalue=1e-17,
Organism=Escherichia coli, GI2367114, Length=65, Percent_Identity=56.9230769230769, Blast_Score=81, Evalue=1e-17,
Organism=Escherichia coli, GI1787834, Length=65, Percent_Identity=58.4615384615385, Blast_Score=81, Evalue=2e-17,
Organism=Escherichia coli, GI1788126, Length=64, Percent_Identity=57.8125, Blast_Score=80, Evalue=3e-17,
Organism=Escherichia coli, GI1787839, Length=62, Percent_Identity=56.4516129032258, Blast_Score=76, Evalue=5e-16,
Organism=Drosophila melanogaster, GI24658520, Length=61, Percent_Identity=47.5409836065574, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7344; Mature: 7213

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATGTVKWFNDAKGFGFITPEGGGEDLFAHFSEIRVDGFKTLQENQKVEFEVKTGPKGLQ
CCCCCEEECCCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCC
AANIKPL
CCCCCCC
>Mature Secondary Structure 
ATGTVKWFNDAKGFGFITPEGGGEDLFAHFSEIRVDGFKTLQENQKVEFEVKTGPKGLQ
CCCCEEECCCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCC
AANIKPL
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA