| Definition | Burkholderia pseudomallei 1106a chromosome I, complete genome. |
|---|---|
| Accession | NC_009076 |
| Length | 3,988,455 |
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The map label for this gene is 126451987
Identifier: 126451987
GI number: 126451987
Start: 316531
End: 317721
Strand: Direct
Name: 126451987
Synonym: BURPS1106A_0343
Alternate gene names: NA
Gene position: 316531-317721 (Clockwise)
Preceding gene: 126452013
Following gene: 126453080
Centisome position: 7.94
GC content: 71.45
Gene sequence:
>1191_bases ATGAATCCGAAAGCTCACGAACCCGCTAGTTTACCCGTTCCCGGCCCCGACGCGCTCGCGCAGTCCGACGCGCTCGCCGC GTCGCTGCGCGCCGAAATCGCCGCGGCGGGCGGATGGATCCCGTTTTCCCGCTACATGGAGCGCGTGCTGTACGCGCCGG GCCTGGGTTACTACAGCGGCGGCGCGCAGAAATTCGGCCGGCGCGGCGACGACGGCAGCGATTTCGTGACCGCGCCCGAG CTGTCGCCGCTCTTCGCGCAGACGCTCGCGCGCCCCGTCGCGCAGGCGCTCGCCGCGAGCGGCACGCGGCGGGTGATGGA ATTCGGCGCGGGCACGGGCCAGCTCGCGGCGGGGCTGCTGAACGCGCTCGCCGCGCTCGGCGTCGAGCTCGACGAATATG CGATCGTCGATTTGTCCGGCGAGCTGCGCGCGCGCCAGCGCGAGACGCTCGACGAACAGGCGTCCGGCGCCGCCGCGCGC GTGCGCTGGCTCGACGCGCTGCCCGAGCGCTTCGAGGGCGTGATCGTCGGCAACGAAGTGCTTGACGCGATGCCGGTGCA ACTCGTCGCGAAGCATGCGCACGGCTGGTGCGAGCGCGGCGTGTCGCTCGGCGATGCGGGCGCGTTCGCGTTCGCCGACC GGCCGCTCGCGCGCGCCGAGGACGCGGCGCGGCTCGCGGCGCTCGACGCCGACGAAGGTTACGTGACCGAGACGCACGAC GCGGCGGCGGCGTTCGTCGGCACGGTCTGCGCGATGCTCGCGCGCGGCGCGGCGTTGTTCATCGACTACGGTTTTCCGCG CCACGAGTACTATCACCGGCAGCGCGCGCAGGGCACGCTGATGTGCCATTACCGGCACCGCGCGCACGGCGATCCGTTCG TCTATCCGGGGCTGCAGGACATCACCGCGCATGTCGAATTCAGCGCCGTCTACGAGGCGGGCGTCGGCGCGGGCGCTGAG CTGCTCGGCTACACGTCGCAGGCGCGCTTTCTGCTGAACGCGGGCATCACCGACGTGCTCGCCGAGATCGACCCGTCCGA CGCGCAACGCTTCCTGCCCGCCGCGAACGCGGTGCAGAAGCTGATTTCCGAGGCGGAGATGGGCGAGCTCTTCAAGGTGA TCGCGTTCTCGCGCGGCATCGACGGCACGCTCGACGCGTTCGCGCGCGGCGATCGTTCGCACACGCTGTAG
Upstream 100 bases:
>100_bases GGCGCCCGTCTGCACGGCGCCCGTAATCAGCACGACCCGCGCGGTGCGGGCCGCGGATGTGTCGCAGGTGTCGGCTGGGA CGGTCATTTACAATGCCGGG
Downstream 100 bases:
>100_bases TCGCCGGAGGCGATGCGATGCTGCGCTGGCTGCTCACCACGTTCATTGCCGTGATGGTGCTCACCCGCGCGTGGCCTTGG CTCGCGAAGCTCGGCGTCGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 396; Mature: 396
Protein sequence:
>396_residues MNPKAHEPASLPVPGPDALAQSDALAASLRAEIAAAGGWIPFSRYMERVLYAPGLGYYSGGAQKFGRRGDDGSDFVTAPE LSPLFAQTLARPVAQALAASGTRRVMEFGAGTGQLAAGLLNALAALGVELDEYAIVDLSGELRARQRETLDEQASGAAAR VRWLDALPERFEGVIVGNEVLDAMPVQLVAKHAHGWCERGVSLGDAGAFAFADRPLARAEDAARLAALDADEGYVTETHD AAAAFVGTVCAMLARGAALFIDYGFPRHEYYHRQRAQGTLMCHYRHRAHGDPFVYPGLQDITAHVEFSAVYEAGVGAGAE LLGYTSQARFLLNAGITDVLAEIDPSDAQRFLPAANAVQKLISEAEMGELFKVIAFSRGIDGTLDAFARGDRSHTL
Sequences:
>Translated_396_residues MNPKAHEPASLPVPGPDALAQSDALAASLRAEIAAAGGWIPFSRYMERVLYAPGLGYYSGGAQKFGRRGDDGSDFVTAPE LSPLFAQTLARPVAQALAASGTRRVMEFGAGTGQLAAGLLNALAALGVELDEYAIVDLSGELRARQRETLDEQASGAAAR VRWLDALPERFEGVIVGNEVLDAMPVQLVAKHAHGWCERGVSLGDAGAFAFADRPLARAEDAARLAALDADEGYVTETHD AAAAFVGTVCAMLARGAALFIDYGFPRHEYYHRQRAQGTLMCHYRHRAHGDPFVYPGLQDITAHVEFSAVYEAGVGAGAE LLGYTSQARFLLNAGITDVLAEIDPSDAQRFLPAANAVQKLISEAEMGELFKVIAFSRGIDGTLDAFARGDRSHTL >Mature_396_residues MNPKAHEPASLPVPGPDALAQSDALAASLRAEIAAAGGWIPFSRYMERVLYAPGLGYYSGGAQKFGRRGDDGSDFVTAPE LSPLFAQTLARPVAQALAASGTRRVMEFGAGTGQLAAGLLNALAALGVELDEYAIVDLSGELRARQRETLDEQASGAAAR VRWLDALPERFEGVIVGNEVLDAMPVQLVAKHAHGWCERGVSLGDAGAFAFADRPLARAEDAARLAALDADEGYVTETHD AAAAFVGTVCAMLARGAALFIDYGFPRHEYYHRQRAQGTLMCHYRHRAHGDPFVYPGLQDITAHVEFSAVYEAGVGAGAE LLGYTSQARFLLNAGITDVLAEIDPSDAQRFLPAANAVQKLISEAEMGELFKVIAFSRGIDGTLDAFARGDRSHTL
Specific function: Unknown
COG id: COG1565
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI21396487, Length=410, Percent_Identity=26.5853658536585, Blast_Score=82, Evalue=7e-16, Organism=Caenorhabditis elegans, GI193211224, Length=353, Percent_Identity=27.1954674220963, Blast_Score=102, Evalue=3e-22, Organism=Drosophila melanogaster, GI24645885, Length=413, Percent_Identity=26.3922518159806, Blast_Score=88, Evalue=1e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42102; Mature: 42102
Theoretical pI: Translated: 4.94; Mature: 4.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNPKAHEPASLPVPGPDALAQSDALAASLRAEIAAAGGWIPFSRYMERVLYAPGLGYYSG CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCC GAQKFGRRGDDGSDFVTAPELSPLFAQTLARPVAQALAASGTRRVMEFGAGTGQLAAGLL CHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHH NALAALGVELDEYAIVDLSGELRARQRETLDEQASGAAARVRWLDALPERFEGVIVGNEV HHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEECCHH LDAMPVQLVAKHAHGWCERGVSLGDAGAFAFADRPLARAEDAARLAALDADEGYVTETHD HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCHHHHHHHHHHHEECCCCCCEECCHH AAAAFVGTVCAMLARGAALFIDYGFPRHEYYHRQRAQGTLMCHYRHRAHGDPFVYPGLQD HHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCCEEEEEHHHCCCCCEECCCHHH ITAHVEFSAVYEAGVGAGAELLGYTSQARFLLNAGITDVLAEIDPSDAQRFLPAANAVQK HHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHH LISEAEMGELFKVIAFSRGIDGTLDAFARGDRSHTL HHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCC >Mature Secondary Structure MNPKAHEPASLPVPGPDALAQSDALAASLRAEIAAAGGWIPFSRYMERVLYAPGLGYYSG CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCC GAQKFGRRGDDGSDFVTAPELSPLFAQTLARPVAQALAASGTRRVMEFGAGTGQLAAGLL CHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHH NALAALGVELDEYAIVDLSGELRARQRETLDEQASGAAARVRWLDALPERFEGVIVGNEV HHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEECCHH LDAMPVQLVAKHAHGWCERGVSLGDAGAFAFADRPLARAEDAARLAALDADEGYVTETHD HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCHHHHHHHHHHHEECCCCCCEECCHH AAAAFVGTVCAMLARGAALFIDYGFPRHEYYHRQRAQGTLMCHYRHRAHGDPFVYPGLQD HHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCCEEEEEHHHCCCCCEECCCHHH ITAHVEFSAVYEAGVGAGAELLGYTSQARFLLNAGITDVLAEIDPSDAQRFLPAANAVQK HHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHH LISEAEMGELFKVIAFSRGIDGTLDAFARGDRSHTL HHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA