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The map label for this gene is yegW [H]

Identifier: 126451927

GI number: 126451927

Start: 930402

End: 931148

Strand: Reverse

Name: yegW [H]

Synonym: BURPS1106A_0949

Alternate gene names: 126451927

Gene position: 931148-930402 (Counterclockwise)

Preceding gene: 126453897

Following gene: 126454029

Centisome position: 23.35

GC content: 65.46

Gene sequence:

>747_bases
ATGAAGCCATCGACGGAAGACCGCTGGTCCGATCTGCGCCCCGACCCCGACAACGACACGCCGCTTTATCTGCAACTCGC
CCGCAAGCTGGGCGACGCGATCCACGACAACCGTTGGGCCGCAGGCGAAGCGCTGCCTTCCGAGCGGCTGCTCGCGGAAT
CGCTCGGCGTGTCGCGGATCACCGCGCGCAAGGCGATCGCGCTGCTCGTCGAGCAAGGGCTCATCCGGCGCACGCAAGGC
GCGGGCAACTTCATCCAGCCGCGCTACGAGGATCCGCTGTCGCGGCTGTCGAGCTTCAGCGAAATGCTCAAGCGGCGCGG
CTTCACGCCGAGCTCGACATGGCTGTCGCGCGACATCCAGCCCGCGAATCGCGACGAGGTGATCCAGCTCGGGCTTTCGC
CCGCCGCATCGGTCACGCGCCTGAAGCGGCTGCGGCTCGCGGACGGCATCGTGATGGCCGTCGAGAATTCGACGTTCCCC
GCAACGATCGTTCCCGATCCGCAGGCAATCGGCGATTCGCTTTACAGCTATCTCGAGCAGCGCGGCACGCCGATCGTGCG
CGCGCTGCAGCACTTTCGCGCGGTCAACGCGACCGACGAGATCGCGCGGCAGATGGGCATCGCGCCGCACGACGCGCTCC
TTTTGATCACCCGGATCGGCTTCACGCACGATCAGCGCGCGATCGAACTCACCGACACATACTGTCGAAACGATTACTAC
GATTTCGTCGTCGAACTGCGCAAATAG

Upstream 100 bases:

>100_bases
AGCGATTCGGCGCGCGCCGGGCCGCCTCGCGCGCAAAACCCGGCTATAACCGCGGCACGCGATGTCTTAGAATGGCCGCA
CTGTTTTCTACGTCCACTCC

Downstream 100 bases:

>100_bases
GCGGCGCGCGCATCGCGGCGCCCCGCGCGGCGCATCGCGGCCGAGCGGCGCGAGGCCGTACGAAAAAGCGCGGCGGCGCC
GCCGACGGCGTCTGCGTAGC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MKPSTEDRWSDLRPDPDNDTPLYLQLARKLGDAIHDNRWAAGEALPSERLLAESLGVSRITARKAIALLVEQGLIRRTQG
AGNFIQPRYEDPLSRLSSFSEMLKRRGFTPSSTWLSRDIQPANRDEVIQLGLSPAASVTRLKRLRLADGIVMAVENSTFP
ATIVPDPQAIGDSLYSYLEQRGTPIVRALQHFRAVNATDEIARQMGIAPHDALLLITRIGFTHDQRAIELTDTYCRNDYY
DFVVELRK

Sequences:

>Translated_248_residues
MKPSTEDRWSDLRPDPDNDTPLYLQLARKLGDAIHDNRWAAGEALPSERLLAESLGVSRITARKAIALLVEQGLIRRTQG
AGNFIQPRYEDPLSRLSSFSEMLKRRGFTPSSTWLSRDIQPANRDEVIQLGLSPAASVTRLKRLRLADGIVMAVENSTFP
ATIVPDPQAIGDSLYSYLEQRGTPIVRALQHFRAVNATDEIARQMGIAPHDALLLITRIGFTHDQRAIELTDTYCRNDYY
DFVVELRK
>Mature_248_residues
MKPSTEDRWSDLRPDPDNDTPLYLQLARKLGDAIHDNRWAAGEALPSERLLAESLGVSRITARKAIALLVEQGLIRRTQG
AGNFIQPRYEDPLSRLSSFSEMLKRRGFTPSSTWLSRDIQPANRDEVIQLGLSPAASVTRLKRLRLADGIVMAVENSTFP
ATIVPDPQAIGDSLYSYLEQRGTPIVRALQHFRAVNATDEIARQMGIAPHDALLLITRIGFTHDQRAIELTDTYCRNDYY
DFVVELRK

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788418, Length=228, Percent_Identity=31.5789473684211, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1786950, Length=228, Percent_Identity=29.8245614035088, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1790118, Length=233, Percent_Identity=29.6137339055794, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI87082252, Length=221, Percent_Identity=27.1493212669683, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1790540, Length=228, Percent_Identity=28.0701754385965, Blast_Score=75, Evalue=6e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27913; Mature: 27913

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPSTEDRWSDLRPDPDNDTPLYLQLARKLGDAIHDNRWAAGEALPSERLLAESLGVSRI
CCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHH
TARKAIALLVEQGLIRRTQGAGNFIQPRYEDPLSRLSSFSEMLKRRGFTPSSTWLSRDIQ
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCC
PANRDEVIQLGLSPAASVTRLKRLRLADGIVMAVENSTFPATIVPDPQAIGDSLYSYLEQ
CCCHHHEEEECCCCHHHHHHHHHHHHHCCEEEEEECCCCCEEECCCHHHHHHHHHHHHHH
RGTPIVRALQHFRAVNATDEIARQMGIAPHDALLLITRIGFTHDQRAIELTDTYCRNDYY
CCCHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCEEEHHHHHHHCCHH
DFVVELRK
HHHHHCCC
>Mature Secondary Structure
MKPSTEDRWSDLRPDPDNDTPLYLQLARKLGDAIHDNRWAAGEALPSERLLAESLGVSRI
CCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHH
TARKAIALLVEQGLIRRTQGAGNFIQPRYEDPLSRLSSFSEMLKRRGFTPSSTWLSRDIQ
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCC
PANRDEVIQLGLSPAASVTRLKRLRLADGIVMAVENSTFPATIVPDPQAIGDSLYSYLEQ
CCCHHHEEEECCCCHHHHHHHHHHHHHCCEEEEEECCCCCEEECCCHHHHHHHHHHHHHH
RGTPIVRALQHFRAVNATDEIARQMGIAPHDALLLITRIGFTHDQRAIELTDTYCRNDYY
CCCHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCEEEHHHHHHHCCHH
DFVVELRK
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]