Click here to switch to the map view.

The map label for this gene is yfdE [H]

Identifier: 126451914

GI number: 126451914

Start: 2671374

End: 2673008

Strand: Reverse

Name: yfdE [H]

Synonym: BURPS1106A_2702

Alternate gene names: 126451914

Gene position: 2673008-2671374 (Counterclockwise)

Preceding gene: 126455351

Following gene: 126454775

Centisome position: 67.02

GC content: 70.03

Gene sequence:

>1635_bases
ATGAGCGGCAATGTCTCGAAGCGATTGCGGGCCTCGAGCGGATCGGAGATCAGGCGCGCCGCCGCCGGTGCGAGCGAGGC
GGCAGGGGCGGCCGGCACCGCCGGCGCGTTCGCGGACGCGGCGCATCCGTTGCCGCCGGCGGGCGGGCTTTGCATGTCGT
CCGAGGGAGGCGTGCCGCCGGGAACGGCGATCGCCGACGCGACGGCCACGGCGTCCGATGCGCGCACGGCGTTCGCCGCA
AATACCAAAGACGCCAAAGACGCCAAAGACGCCAAAGACGCCAAAGACGCCAAAGACGCCAAAGACGCCAAAGACGCCAA
AGACACCAAAGACACCAAAGACACCAAAGACACCAAAGACACCAAAGACACCAAAGACACCAAAGACACCACATCCCGCC
CGTCCCTCGCCGCCGCGAATCATGCAACCGGGCCCGTCCGCCCTGGCGCGCTCGCCGGCCTGAAAATCATCGACCTGAGC
CGCGTCCTCGGCGGCCCGTACTGCACGCAGGCGCTCGCGGACCACGGCGCGCGCGTGATCAAGATCGAGCCGCCGGCGGG
CGACGAAACGCGCGGCTGGGGCCCGCCGTTCCTCGACGACGACGCGTGGTACTTCACCGGCGTGAATCGCAACAAGGAAG
GGATCGTGCTCGACTTGTCGCGCGACGAAGGCCGCGCGATCCTCTGGCGTCTGCTCGAAGACGCGGACGTGCTTGTCGAA
AACTTCAAGCCCGGCACGCTCGCGCGCTGGGGGATGGACTACGAGCGGGACTTGCGGCCGCGCTTTGCGCGCCTCGTCCA
TTGCGCGATCACGGGTTTCGGCGCCGACGGCCCGCTCGGCGGGCTGCCCGGCTACGATGCGGTGATCCAGGCGATGGCGG
GCCTCATGAGCGTGAACGGCGATGCCGGTGGCGACGCGACGCGCATCGGCTTGCCGATCGTCGACATGGTGACGGGCCTG
AACGCGCTCGCCGGCATCCTGCTCGCGCTCGCCGAGCGCGAGAGAAGCGGCGTGGGCCAGTCGATCGACATCGCGCTGTA
CGACTGCGGCGTGTCGCTGCTGCATCCGCACCTGCCGAACTGGTTCGGCTCGGGGCGCACCCCCGCGCGCAGCGGCAACG
CGCATCCGAACATCGCACCGTACGACAGCTACCGCACCGCGAGCGCGCCGATCTTTCTCGCGATTGGCAACGACCGGCAG
TTCGCGCGGCTTTGCGCACACCTTGGCGTGCCCGCGCTCGCGAGCGATCCGCGTTTTATTGACAACCGCAGCCGCTGCGC
GCATCGCGCCGAGCTGAAGGCGAGCCTCGAGACGCGGCTCGCCGGCCGCGATGGCGAGACGCTCGCGCGCGAGCTGATGG
CCGAGGGCGTGCCGTGCGGGCCGGTGCGCACGATCGATGCGCTCGCGTGCGATCCGCACACGCTGCATCGCGGGCTCGTC
GTCGAGATGGGGCGATACCGCGGCGCGGCGTCGCCGATCAAGCTCTCGCGCACGCCCGCGACGTACCGCACCGCGCCGCC
CACGCTCGGCCGCGATACGCGCGCGGTGCTCGACGCGCTCGGCATCGATGCGGCGACGCAGGCGCGGCTCGCCGACGCGG
GCGTGCTCAAGGAGGCGAAACCAATGGCGACGTGA

Upstream 100 bases:

>100_bases
CGGACGCGGAGGCCGGCGTGCTGGCGGCGTTGTTGCACGATCGGCCCGTCACGCTCGACGACGCGTTGCGCCTGCTCGAC
GATCGTTCGGGAGACGCGGC

Downstream 100 bases:

>100_bases
GCGAACGGCCGCGGCCCGCCGACGCGAAGCGGCGGCCGCGGCTCGAGGGTGCCGCCGGGTGCGCGCGCGGCCGGACGTCC
GGAAGGCGTGCGATCCGTCT

Product: CAIB/BAIF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 544; Mature: 543

Protein sequence:

>544_residues
MSGNVSKRLRASSGSEIRRAAAGASEAAGAAGTAGAFADAAHPLPPAGGLCMSSEGGVPPGTAIADATATASDARTAFAA
NTKDAKDAKDAKDAKDAKDAKDAKDAKDTKDTKDTKDTKDTKDTKDTKDTTSRPSLAAANHATGPVRPGALAGLKIIDLS
RVLGGPYCTQALADHGARVIKIEPPAGDETRGWGPPFLDDDAWYFTGVNRNKEGIVLDLSRDEGRAILWRLLEDADVLVE
NFKPGTLARWGMDYERDLRPRFARLVHCAITGFGADGPLGGLPGYDAVIQAMAGLMSVNGDAGGDATRIGLPIVDMVTGL
NALAGILLALAERERSGVGQSIDIALYDCGVSLLHPHLPNWFGSGRTPARSGNAHPNIAPYDSYRTASAPIFLAIGNDRQ
FARLCAHLGVPALASDPRFIDNRSRCAHRAELKASLETRLAGRDGETLARELMAEGVPCGPVRTIDALACDPHTLHRGLV
VEMGRYRGAASPIKLSRTPATYRTAPPTLGRDTRAVLDALGIDAATQARLADAGVLKEAKPMAT

Sequences:

>Translated_544_residues
MSGNVSKRLRASSGSEIRRAAAGASEAAGAAGTAGAFADAAHPLPPAGGLCMSSEGGVPPGTAIADATATASDARTAFAA
NTKDAKDAKDAKDAKDAKDAKDAKDAKDTKDTKDTKDTKDTKDTKDTKDTTSRPSLAAANHATGPVRPGALAGLKIIDLS
RVLGGPYCTQALADHGARVIKIEPPAGDETRGWGPPFLDDDAWYFTGVNRNKEGIVLDLSRDEGRAILWRLLEDADVLVE
NFKPGTLARWGMDYERDLRPRFARLVHCAITGFGADGPLGGLPGYDAVIQAMAGLMSVNGDAGGDATRIGLPIVDMVTGL
NALAGILLALAERERSGVGQSIDIALYDCGVSLLHPHLPNWFGSGRTPARSGNAHPNIAPYDSYRTASAPIFLAIGNDRQ
FARLCAHLGVPALASDPRFIDNRSRCAHRAELKASLETRLAGRDGETLARELMAEGVPCGPVRTIDALACDPHTLHRGLV
VEMGRYRGAASPIKLSRTPATYRTAPPTLGRDTRAVLDALGIDAATQARLADAGVLKEAKPMAT
>Mature_543_residues
SGNVSKRLRASSGSEIRRAAAGASEAAGAAGTAGAFADAAHPLPPAGGLCMSSEGGVPPGTAIADATATASDARTAFAAN
TKDAKDAKDAKDAKDAKDAKDAKDAKDTKDTKDTKDTKDTKDTKDTKDTTSRPSLAAANHATGPVRPGALAGLKIIDLSR
VLGGPYCTQALADHGARVIKIEPPAGDETRGWGPPFLDDDAWYFTGVNRNKEGIVLDLSRDEGRAILWRLLEDADVLVEN
FKPGTLARWGMDYERDLRPRFARLVHCAITGFGADGPLGGLPGYDAVIQAMAGLMSVNGDAGGDATRIGLPIVDMVTGLN
ALAGILLALAERERSGVGQSIDIALYDCGVSLLHPHLPNWFGSGRTPARSGNAHPNIAPYDSYRTASAPIFLAIGNDRQF
ARLCAHLGVPALASDPRFIDNRSRCAHRAELKASLETRLAGRDGETLARELMAEGVPCGPVRTIDALACDPHTLHRGLVV
EMGRYRGAASPIKLSRTPATYRTAPPTLGRDTRAVLDALGIDAATQARLADAGVLKEAKPMAT

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=395, Percent_Identity=35.6962025316456, Blast_Score=251, Evalue=1e-66,
Organism=Homo sapiens, GI300863124, Length=421, Percent_Identity=33.4916864608076, Blast_Score=237, Evalue=2e-62,
Organism=Homo sapiens, GI300863126, Length=395, Percent_Identity=31.8987341772152, Blast_Score=203, Evalue=3e-52,
Organism=Homo sapiens, GI13376042, Length=421, Percent_Identity=30.166270783848, Blast_Score=202, Evalue=9e-52,
Organism=Homo sapiens, GI42794625, Length=407, Percent_Identity=27.2727272727273, Blast_Score=102, Evalue=1e-21,
Organism=Homo sapiens, GI266456254, Length=403, Percent_Identity=27.2952853598015, Blast_Score=101, Evalue=2e-21,
Organism=Homo sapiens, GI266458397, Length=264, Percent_Identity=32.1969696969697, Blast_Score=96, Evalue=8e-20,
Organism=Homo sapiens, GI266458393, Length=264, Percent_Identity=32.1969696969697, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI266458395, Length=147, Percent_Identity=32.6530612244898, Blast_Score=76, Evalue=7e-14,
Organism=Homo sapiens, GI42822893, Length=147, Percent_Identity=32.6530612244898, Blast_Score=75, Evalue=2e-13,
Organism=Escherichia coli, GI87082093, Length=351, Percent_Identity=38.4615384615385, Blast_Score=262, Evalue=3e-71,
Organism=Escherichia coli, GI1788717, Length=402, Percent_Identity=32.089552238806, Blast_Score=155, Evalue=9e-39,
Organism=Escherichia coli, GI1786222, Length=403, Percent_Identity=26.0545905707196, Blast_Score=106, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI115535051, Length=253, Percent_Identity=27.6679841897233, Blast_Score=68, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI32564160, Length=333, Percent_Identity=24.3243243243243, Blast_Score=66, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24648431, Length=396, Percent_Identity=40.1515151515151, Blast_Score=270, Evalue=1e-72,
Organism=Drosophila melanogaster, GI24585488, Length=199, Percent_Identity=29.1457286432161, Blast_Score=82, Evalue=9e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 56914; Mature: 56782

Theoretical pI: Translated: 7.55; Mature: 7.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGNVSKRLRASSGSEIRRAAAGASEAAGAAGTAGAFADAAHPLPPAGGLCMSSEGGVPP
CCCCHHHHHHCCCCHHHHHHHCCCHHHCCCCCCCCHHHHCCCCCCCCCCEEECCCCCCCC
GTAIADATATASDARTAFAANTKDAKDAKDAKDAKDAKDAKDAKDAKDTKDTKDTKDTKD
CCHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
TKDTKDTKDTTSRPSLAAANHATGPVRPGALAGLKIIDLSRVLGGPYCTQALADHGARVI
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCEEEEEHHHHHCCHHHHHHHHHCCCEEE
KIEPPAGDETRGWGPPFLDDDAWYFTGVNRNKEGIVLDLSRDEGRAILWRLLEDADVLVE
EECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
NFKPGTLARWGMDYERDLRPRFARLVHCAITGFGADGPLGGLPGYDAVIQAMAGLMSVNG
CCCCCCHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
DAGGDATRIGLPIVDMVTGLNALAGILLALAERERSGVGQSIDIALYDCGVSLLHPHLPN
CCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHHCCCCCC
WFGSGRTPARSGNAHPNIAPYDSYRTASAPIFLAIGNDRQFARLCAHLGVPALASDPRFI
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCHH
DNRSRCAHRAELKASLETRLAGRDGETLARELMAEGVPCGPVRTIDALACDPHTLHRGLV
CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHCCCHHHHHHHHH
VEMGRYRGAASPIKLSRTPATYRTAPPTLGRDTRAVLDALGIDAATQARLADAGVLKEAK
HHHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
PMAT
CCCC
>Mature Secondary Structure 
SGNVSKRLRASSGSEIRRAAAGASEAAGAAGTAGAFADAAHPLPPAGGLCMSSEGGVPP
CCCHHHHHHCCCCHHHHHHHCCCHHHCCCCCCCCHHHHCCCCCCCCCCEEECCCCCCCC
GTAIADATATASDARTAFAANTKDAKDAKDAKDAKDAKDAKDAKDAKDTKDTKDTKDTKD
CCHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
TKDTKDTKDTTSRPSLAAANHATGPVRPGALAGLKIIDLSRVLGGPYCTQALADHGARVI
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCEEEEEHHHHHCCHHHHHHHHHCCCEEE
KIEPPAGDETRGWGPPFLDDDAWYFTGVNRNKEGIVLDLSRDEGRAILWRLLEDADVLVE
EECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
NFKPGTLARWGMDYERDLRPRFARLVHCAITGFGADGPLGGLPGYDAVIQAMAGLMSVNG
CCCCCCHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
DAGGDATRIGLPIVDMVTGLNALAGILLALAERERSGVGQSIDIALYDCGVSLLHPHLPN
CCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHHCCCCCC
WFGSGRTPARSGNAHPNIAPYDSYRTASAPIFLAIGNDRQFARLCAHLGVPALASDPRFI
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCHH
DNRSRCAHRAELKASLETRLAGRDGETLARELMAEGVPCGPVRTIDALACDPHTLHRGLV
CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHCCCHHHHHHHHH
VEMGRYRGAASPIKLSRTPATYRTAPPTLGRDTRAVLDALGIDAATQARLADAGVLKEAK
HHHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
PMAT
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]