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The map label for this gene is rpoE [H]

Identifier: 126451887

GI number: 126451887

Start: 2802167

End: 2803345

Strand: Reverse

Name: rpoE [H]

Synonym: BURPS1106A_2848

Alternate gene names: 126451887

Gene position: 2803345-2802167 (Counterclockwise)

Preceding gene: 126453016

Following gene: 126452226

Centisome position: 70.29

GC content: 68.62

Gene sequence:

>1179_bases
TTGACGGAGCCGTTCCATGCCGCATCGGCAGGCACGCAGCACGTCGTGCTGCGCGCGTCGGCGTGCCTGCGCGTCGCGTG
CGCGCTGTTCGTGCCGGCCGTCGGCGCGGCGCTCTATGCGTGCGCCGCGCCGCTCGTCGGCGGCGGCGGGGCGGCGGCAC
TCGCGGGGCTCGCCGCGGCGCTCGTCGCGCTGCGTGCGCGGGCCGCGTGCGTGCGGCATCAGCCGGCGGCGTTGCTGATC
GACGCCGGCGCGGGCGTGCTCGCGGCGTTCGATCGCGATGGGCGGCGCCTCGCGCGCGGGCAGATCGCCGGCTGCACGCA
ATGGAGCGATCTGCTTGTCGTGCTGAGGGTGCAGGGCCGCGGCCGGCGCGTGACGCCGCTCGTCATTCCGGCCGATGCGG
TCGACGCGGCCGTGTTCCGCGCGCTCTGCGTGCTGGGCCGGCGGGCCGCGCGCGGGGCGCTCGCGGCGGCATGGCGCCCG
CGCGGCAGGCCGCTTCCGGTCGAAAACGCCCATGAGCGCCTCGAGCGGGAACGTTACAATAGCGCTCCGCGTTGCTTCCC
TCGTTTACGGATTTGTCAGGTGAGTGAAAAAGAAATCGATCAGGTACTGGTCGAACGCGTACAGAATGGCGACAAGGCGG
CGTTCGAACTCCTGGTCTCCAAATACCACCGCAAGATCATCCGGCTGATCTCGCGCCTCGTGCGGGATCCCGCGGAGGTC
GAGGACGTGGCCCAGGACGCGTTCATCAAGGCGTATCGCGCGTTGCCGCAGTTTCGCGGCGAGTCGGCGTTCTACACGTG
GTTGTACCGGATTGCCGTCAATACGGCGAAGAACTACCTTGCGACCCAGGGGCGCCGGGCGCCCACGTCCACCGACGCGG
ACGCCGAAGAGGCTGAAACTTTCTCCGACGCGGACCAACTAAGGGATATCAACACGCCTGAGTCGATGTTGATGAGCAAG
CAGATCGCCCAAACGGTCAACGCCGCGATGGCGCTGTTGCCGGAAGAGTTGCGAACGGCCATCACGCTGCGCGAGATCGA
AGGTCTGAGCTACGAAGAGATCGCGGAGATGATGGGTTGCCCGATCGGCACCGTCCGCTCGCGGATCTTTCGCGCCCGCG
AGGCGATCGCGGCAAAATTGCGGCCGCTGCTCGATACGCCGGAAGGCAGGCGCTGGTAA

Upstream 100 bases:

>100_bases
AAGCGCGCGAGATGAAGATCGACGTCGCGTTGAAGAACTCCTTCGGCTTCGGCGGGACTAACGGCACGCTGGTCTTCAAG
CGCGCCTGACGCGGGGTCGC

Downstream 100 bases:

>100_bases
GCGCCTGCGGCGAATCGAAGCGGCTTGGGGTCTAGTTACGGAGTCGTGTGTCACGACGGGGTGTGTGCAAGATGGGGAGC
ATCATGGGGTCGGTCTCTAC

Product: RNA polymerase sigma factor RpoE

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 392; Mature: 391

Protein sequence:

>392_residues
MTEPFHAASAGTQHVVLRASACLRVACALFVPAVGAALYACAAPLVGGGGAAALAGLAAALVALRARAACVRHQPAALLI
DAGAGVLAAFDRDGRRLARGQIAGCTQWSDLLVVLRVQGRGRRVTPLVIPADAVDAAVFRALCVLGRRAARGALAAAWRP
RGRPLPVENAHERLERERYNSAPRCFPRLRICQVSEKEIDQVLVERVQNGDKAAFELLVSKYHRKIIRLISRLVRDPAEV
EDVAQDAFIKAYRALPQFRGESAFYTWLYRIAVNTAKNYLATQGRRAPTSTDADAEEAETFSDADQLRDINTPESMLMSK
QIAQTVNAAMALLPEELRTAITLREIEGLSYEEIAEMMGCPIGTVRSRIFRAREAIAAKLRPLLDTPEGRRW

Sequences:

>Translated_392_residues
MTEPFHAASAGTQHVVLRASACLRVACALFVPAVGAALYACAAPLVGGGGAAALAGLAAALVALRARAACVRHQPAALLI
DAGAGVLAAFDRDGRRLARGQIAGCTQWSDLLVVLRVQGRGRRVTPLVIPADAVDAAVFRALCVLGRRAARGALAAAWRP
RGRPLPVENAHERLERERYNSAPRCFPRLRICQVSEKEIDQVLVERVQNGDKAAFELLVSKYHRKIIRLISRLVRDPAEV
EDVAQDAFIKAYRALPQFRGESAFYTWLYRIAVNTAKNYLATQGRRAPTSTDADAEEAETFSDADQLRDINTPESMLMSK
QIAQTVNAAMALLPEELRTAITLREIEGLSYEEIAEMMGCPIGTVRSRIFRAREAIAAKLRPLLDTPEGRRW
>Mature_391_residues
TEPFHAASAGTQHVVLRASACLRVACALFVPAVGAALYACAAPLVGGGGAAALAGLAAALVALRARAACVRHQPAALLID
AGAGVLAAFDRDGRRLARGQIAGCTQWSDLLVVLRVQGRGRRVTPLVIPADAVDAAVFRALCVLGRRAARGALAAAWRPR
GRPLPVENAHERLERERYNSAPRCFPRLRICQVSEKEIDQVLVERVQNGDKAAFELLVSKYHRKIIRLISRLVRDPAEVE
DVAQDAFIKAYRALPQFRGESAFYTWLYRIAVNTAKNYLATQGRRAPTSTDADAEEAETFSDADQLRDINTPESMLMSKQ
IAQTVNAAMALLPEELRTAITLREIEGLSYEEIAEMMGCPIGTVRSRIFRAREAIAAKLRPLLDTPEGRRW

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=191, Percent_Identity=61.7801047120419, Blast_Score=236, Evalue=3e-63,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 42725; Mature: 42594

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEPFHAASAGTQHVVLRASACLRVACALFVPAVGAALYACAAPLVGGGGAAALAGLAAA
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
LVALRARAACVRHQPAALLIDAGAGVLAAFDRDGRRLARGQIAGCTQWSDLLVVLRVQGR
HHHHHHHHHHHHCCCCEEEEECCCCEEEEECCCCHHHHHCCCCCCCHHHHHHEEEEECCC
GRRVTPLVIPADAVDAAVFRALCVLGRRAARGALAAAWRPRGRPLPVENAHERLERERYN
CCEECEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC
SAPRCFPRLRICQVSEKEIDQVLVERVQNGDKAAFELLVSKYHRKIIRLISRLVRDPAEV
CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
EDVAQDAFIKAYRALPQFRGESAFYTWLYRIAVNTAKNYLATQGRRAPTSTDADAEEAET
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
FSDADQLRDINTPESMLMSKQIAQTVNAAMALLPEELRTAITLREIEGLSYEEIAEMMGC
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
PIGTVRSRIFRAREAIAAKLRPLLDTPEGRRW
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TEPFHAASAGTQHVVLRASACLRVACALFVPAVGAALYACAAPLVGGGGAAALAGLAAA
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
LVALRARAACVRHQPAALLIDAGAGVLAAFDRDGRRLARGQIAGCTQWSDLLVVLRVQGR
HHHHHHHHHHHHCCCCEEEEECCCCEEEEECCCCHHHHHCCCCCCCHHHHHHEEEEECCC
GRRVTPLVIPADAVDAAVFRALCVLGRRAARGALAAAWRPRGRPLPVENAHERLERERYN
CCEECEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC
SAPRCFPRLRICQVSEKEIDQVLVERVQNGDKAAFELLVSKYHRKIIRLISRLVRDPAEV
CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
EDVAQDAFIKAYRALPQFRGESAFYTWLYRIAVNTAKNYLATQGRRAPTSTDADAEEAET
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
FSDADQLRDINTPESMLMSKQIAQTVNAAMALLPEELRTAITLREIEGLSYEEIAEMMGC
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
PIGTVRSRIFRAREAIAAKLRPLLDTPEGRRW
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]