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The map label for this gene is rbsC [H]

Identifier: 126451811

GI number: 126451811

Start: 1877447

End: 1878466

Strand: Direct

Name: rbsC [H]

Synonym: BURPS1106A_1922

Alternate gene names: 126451811

Gene position: 1877447-1878466 (Clockwise)

Preceding gene: 126453379

Following gene: 126454701

Centisome position: 47.07

GC content: 72.16

Gene sequence:

>1020_bases
ATGCATGACCGGACGGCCGCGCCGTCTGCCTCTTGCGCGCCCGCCGCCGCGAGCCCCGCTCGGGCCACGGGCCCCGCGCG
CGCCGCGCACGCGCTCGCCGCGCTGCGGCGCTCGACGACGTTCTACCCGCTCGTCGGGCTCGTCGCCGTGTGCGTCGCGA
TGGTGTTCGCGAGCGACAGCTTCCTGAGCGCGGCGAACCTCGAGAACGTGCTGCGGCAGGTGTCGATCAACGCGATCATC
GGCGTCGGGATGACCTGCGTGATCCTGACGGGCGGCATCGACCTGTCGGTCGGCTCGGTGATGGCGCTGTCCGGCACGCT
CGCGGCGGGCCTTCTCGTCGCGGGCGCGAACGGCGCGGCGGCGCTTGCCGCGGGCATCGGCGTCGGGGTCGCGCTCGGCG
CGGCGAACGGCCTGTTCGTCGCGTTCGCCGGCATGCCGCCCATCATCGTCACGCTCGCGACGATGGGCATCGCGCGCGGC
CTCGCGCTCATCTACACGGGCGGCTACCCGATCGACGGGCTGCCCGACTGGGTCCGCTTCTTCGGCAGCGGCAAGGTGCT
CGGCGTGCAAATGCCCGTGCTGACGATGCTCGCGGTCTACGCGCTCGCGTGGCTGATGCTCGAGCGCATGCCGTTCGGCC
GCTACGTCTACGCGATCGGCGGCAACGAGCACGCGACGCGGCTCTCGGGCGTGCGCGTGTCGCGCGTGAAGCTGGCCGTC
TATACGTTCGCGGGGCTCACGTCCGCGCTCGCCGCGCTCGTGCTGACGGGCCGCCTGATGAGCGGGCAGCCGAACGCGGG
GGGCGGCTTCGAGCTCGACGCGATCGCCGCCGTCGTGATGGGCGGCACGTCGATCGCGGGCGGCCGCGGCTCGATCGTCG
GCACGCTTGTCGGCGCGCTGCTGCTCGGCGTGCTGAACAACGGCCTGAACATGATCGGCGTGAATCCCTACGTGCAGAAC
GTGATCAAGGGCGCCATCATCCTGCTCGCGATCTACATCGGCCGCGAGCGCCGCACGTGA

Upstream 100 bases:

>100_bases
CGGCAGGGCCGTATCGAGGCGATGCTCGAAGGCGAGGCGATCGAGCCGAACACGGTGATGACCTATGCGACTTCCGACGT
ACGCGGAGCGAATCATGAAC

Downstream 100 bases:

>100_bases
GCGCCGCGGCGAGCGGCGGGCCGAGATGCGCCGCGCGTGCCGCCTGGATCGGGCGCGTCGCGCGCATCGCCCGCGGCGCG
GCGGCCAGGAGCGATGCGCG

Product: carbohydrate ABC transporter permease

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MHDRTAAPSASCAPAAASPARATGPARAAHALAALRRSTTFYPLVGLVAVCVAMVFASDSFLSAANLENVLRQVSINAII
GVGMTCVILTGGIDLSVGSVMALSGTLAAGLLVAGANGAAALAAGIGVGVALGAANGLFVAFAGMPPIIVTLATMGIARG
LALIYTGGYPIDGLPDWVRFFGSGKVLGVQMPVLTMLAVYALAWLMLERMPFGRYVYAIGGNEHATRLSGVRVSRVKLAV
YTFAGLTSALAALVLTGRLMSGQPNAGGGFELDAIAAVVMGGTSIAGGRGSIVGTLVGALLLGVLNNGLNMIGVNPYVQN
VIKGAIILLAIYIGRERRT

Sequences:

>Translated_339_residues
MHDRTAAPSASCAPAAASPARATGPARAAHALAALRRSTTFYPLVGLVAVCVAMVFASDSFLSAANLENVLRQVSINAII
GVGMTCVILTGGIDLSVGSVMALSGTLAAGLLVAGANGAAALAAGIGVGVALGAANGLFVAFAGMPPIIVTLATMGIARG
LALIYTGGYPIDGLPDWVRFFGSGKVLGVQMPVLTMLAVYALAWLMLERMPFGRYVYAIGGNEHATRLSGVRVSRVKLAV
YTFAGLTSALAALVLTGRLMSGQPNAGGGFELDAIAAVVMGGTSIAGGRGSIVGTLVGALLLGVLNNGLNMIGVNPYVQN
VIKGAIILLAIYIGRERRT
>Mature_339_residues
MHDRTAAPSASCAPAAASPARATGPARAAHALAALRRSTTFYPLVGLVAVCVAMVFASDSFLSAANLENVLRQVSINAII
GVGMTCVILTGGIDLSVGSVMALSGTLAAGLLVAGANGAAALAAGIGVGVALGAANGLFVAFAGMPPIIVTLATMGIARG
LALIYTGGYPIDGLPDWVRFFGSGKVLGVQMPVLTMLAVYALAWLMLERMPFGRYVYAIGGNEHATRLSGVRVSRVKLAV
YTFAGLTSALAALVLTGRLMSGQPNAGGGFELDAIAAVVMGGTSIAGGRGSIVGTLVGALLLGVLNNGLNMIGVNPYVQN
VIKGAIILLAIYIGRERRT

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=320, Percent_Identity=46.5625, Blast_Score=248, Evalue=6e-67,
Organism=Escherichia coli, GI1790524, Length=298, Percent_Identity=39.5973154362416, Blast_Score=180, Evalue=1e-46,
Organism=Escherichia coli, GI1789992, Length=364, Percent_Identity=36.5384615384615, Blast_Score=167, Evalue=8e-43,
Organism=Escherichia coli, GI1788896, Length=284, Percent_Identity=35.9154929577465, Blast_Score=157, Evalue=7e-40,
Organism=Escherichia coli, GI145693152, Length=280, Percent_Identity=36.0714285714286, Blast_Score=154, Evalue=9e-39,
Organism=Escherichia coli, GI145693214, Length=254, Percent_Identity=35.4330708661417, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI1787793, Length=284, Percent_Identity=34.5070422535211, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI1788471, Length=319, Percent_Identity=36.3636363636364, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI87082395, Length=289, Percent_Identity=36.3321799307958, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI1787794, Length=264, Percent_Identity=34.0909090909091, Blast_Score=118, Evalue=5e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34153; Mature: 34153

Theoretical pI: Translated: 10.26; Mature: 10.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHDRTAAPSASCAPAAASPARATGPARAAHALAALRRSTTFYPLVGLVAVCVAMVFASDS
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
FLSAANLENVLRQVSINAIIGVGMTCVILTGGIDLSVGSVMALSGTLAAGLLVAGANGAA
HHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHEECCCCHH
ALAAGIGVGVALGAANGLFVAFAGMPPIIVTLATMGIARGLALIYTGGYPIDGLPDWVRF
HHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHH
FGSGKVLGVQMPVLTMLAVYALAWLMLERMPFGRYVYAIGGNEHATRLSGVRVSRVKLAV
HCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCEEHHHEEHH
YTFAGLTSALAALVLTGRLMSGQPNAGGGFELDAIAAVVMGGTSIAGGRGSIVGTLVGAL
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCEECCCCCHHHHHHHHHH
LLGVLNNGLNMIGVNPYVQNVIKGAIILLAIYIGRERRT
HHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MHDRTAAPSASCAPAAASPARATGPARAAHALAALRRSTTFYPLVGLVAVCVAMVFASDS
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
FLSAANLENVLRQVSINAIIGVGMTCVILTGGIDLSVGSVMALSGTLAAGLLVAGANGAA
HHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHEECCCCHH
ALAAGIGVGVALGAANGLFVAFAGMPPIIVTLATMGIARGLALIYTGGYPIDGLPDWVRF
HHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHH
FGSGKVLGVQMPVLTMLAVYALAWLMLERMPFGRYVYAIGGNEHATRLSGVRVSRVKLAV
HCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCEEHHHEEHH
YTFAGLTSALAALVLTGRLMSGQPNAGGGFELDAIAAVVMGGTSIAGGRGSIVGTLVGAL
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCEECCCCCHHHHHHHHHH
LLGVLNNGLNMIGVNPYVQNVIKGAIILLAIYIGRERRT
HHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]