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The map label for this gene is lpxC [H]

Identifier: 126451807

GI number: 126451807

Start: 3178748

End: 3179665

Strand: Reverse

Name: lpxC [H]

Synonym: BURPS1106A_3270

Alternate gene names: 126451807

Gene position: 3179665-3178748 (Counterclockwise)

Preceding gene: 126453363

Following gene: 126454564

Centisome position: 79.72

GC content: 71.68

Gene sequence:

>918_bases
ATGAGCGTGCCGACCGGCTGGGCGACGAGTCAGGGTACGCTGGCACGCGCGCTGACGATCGACGGTCACGGGCTGCACAC
GGGGCGCCGGGTGGGGGTGCGGATCCTGCCCGCGCGTCCCGAGGACGGCGTGACGGGCATCGCGTTTCGCCGCGTCGAGC
AGGGGCGCACGCTCGCGACGCTGCCCGTCGATCCCGCGCTGCGCCGCGCGCAGCCGCTCTGCACGATGCTGCGCAATGCC
GACGGCGTCGGCGTGCGCACCGTCGAGCATCTGCTCGCATCGCTGCTCGCGTGCGAAATCGATCACGCGATCGTCGAGCT
CGACGCGGAGGAGGTACCGATTCTCGACGGCAGCGCAACGCCGTGGGTGGACGCGATCCGCACGTGCGGCCGCGTCGCGC
TCGATGCGCCGAAGCGTTTCATCCGCGTGCTGCGGACTGTCGTCGTCACGGAGGGCGAGGGCGAGCAGCGGCGCGAAATG
CGGATCGAACCGGCGCCGCGCTACGAGCTGAGCGTGCGCAATGACCTGCGCGGCTTCGGCGAGATGCACTGGGACGGTGC
GTTGACGCCGGCCGCATTCGCGACCGAAATCGCGCCGTCGCGCTCGTATGGCCGCGTGAAATGGGCGGTCCCCGCGATCC
TTGCCGGCTATCTGCGCGGGGTGCCGATCCTGCGCGGCGCGCGGCCGTCGTGCACCGCATCCATCGTCGGCAAGCGCGTG
CTGGGCGGGATGCGGCTGCCGGACGAGTTCGTCCGGCACCGCGTGCTCGACCTCGTCGGCGATCTCGCGCTGGCCGGTGC
GCCGTTGCTCGCGCGCGTGAGCGCGGTGCGGCCGAGCCACGAAATGAATTTCCGGCTCGTCGACGCATTGCTGGCCGAGC
CCGGCGCGTGGCAGTGGGCCGATTTTTCCGAGGCCTGA

Upstream 100 bases:

>100_bases
TCGCCGCGAAGCACGCGATCGACGGCGACGCGCGCGCGGTGCTCGATATCCGGCCGGCGCCCGTGGCAGGCCAGGTGTCG
CCGACGCTGGAGGTCGCGCG

Downstream 100 bases:

>100_bases
AACCGCGCTTTTTCAAAATGCACGGCGTAACATAGCGACTTTTCGCGATACACCGAAGGAAGCAATGGCACTGGGAGAGC
ATCTTCGCCAGCAACTGGCG

Product: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase

Products: UDP-3-O-(3-Hydroxytetradecanoyl)- Glucosamine; Acetate. [C]

Alternate protein names: UDP-3-O-acyl-GlcNAc deacetylase [H]

Number of amino acids: Translated: 305; Mature: 304

Protein sequence:

>305_residues
MSVPTGWATSQGTLARALTIDGHGLHTGRRVGVRILPARPEDGVTGIAFRRVEQGRTLATLPVDPALRRAQPLCTMLRNA
DGVGVRTVEHLLASLLACEIDHAIVELDAEEVPILDGSATPWVDAIRTCGRVALDAPKRFIRVLRTVVVTEGEGEQRREM
RIEPAPRYELSVRNDLRGFGEMHWDGALTPAAFATEIAPSRSYGRVKWAVPAILAGYLRGVPILRGARPSCTASIVGKRV
LGGMRLPDEFVRHRVLDLVGDLALAGAPLLARVSAVRPSHEMNFRLVDALLAEPGAWQWADFSEA

Sequences:

>Translated_305_residues
MSVPTGWATSQGTLARALTIDGHGLHTGRRVGVRILPARPEDGVTGIAFRRVEQGRTLATLPVDPALRRAQPLCTMLRNA
DGVGVRTVEHLLASLLACEIDHAIVELDAEEVPILDGSATPWVDAIRTCGRVALDAPKRFIRVLRTVVVTEGEGEQRREM
RIEPAPRYELSVRNDLRGFGEMHWDGALTPAAFATEIAPSRSYGRVKWAVPAILAGYLRGVPILRGARPSCTASIVGKRV
LGGMRLPDEFVRHRVLDLVGDLALAGAPLLARVSAVRPSHEMNFRLVDALLAEPGAWQWADFSEA
>Mature_304_residues
SVPTGWATSQGTLARALTIDGHGLHTGRRVGVRILPARPEDGVTGIAFRRVEQGRTLATLPVDPALRRAQPLCTMLRNAD
GVGVRTVEHLLASLLACEIDHAIVELDAEEVPILDGSATPWVDAIRTCGRVALDAPKRFIRVLRTVVVTEGEGEQRREMR
IEPAPRYELSVRNDLRGFGEMHWDGALTPAAFATEIAPSRSYGRVKWAVPAILAGYLRGVPILRGARPSCTASIVGKRVL
GGMRLPDEFVRHRVLDLVGDLALAGAPLLARVSAVRPSHEMNFRLVDALLAEPGAWQWADFSEA

Specific function: Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell [H]

COG id: COG0774

COG function: function code M; UDP-3-O-acyl-N-acetylglucosamine deacetylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lpxC family [H]

Homologues:

Organism=Escherichia coli, GI1786285, Length=301, Percent_Identity=31.5614617940199, Blast_Score=150, Evalue=8e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020568
- InterPro:   IPR004463
- InterPro:   IPR011334
- InterPro:   IPR015870 [H]

Pfam domain/function: PF03331 LpxC [H]

EC number: 3.5.1.- [C]

Molecular weight: Translated: 33142; Mature: 33011

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVPTGWATSQGTLARALTIDGHGLHTGRRVGVRILPARPEDGVTGIAFRRVEQGRTLAT
CCCCCCCCCCCCCEEEEEEECCCCCCCCCEECEEEECCCCCCCCCHHHHHHHHCCCEEEE
LPVDPALRRAQPLCTMLRNADGVGVRTVEHLLASLLACEIDHAIVELDAEEVPILDGSAT
CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCEECCCCC
PWVDAIRTCGRVALDAPKRFIRVLRTVVVTEGEGEQRREMRIEPAPRYELSVRNDLRGFG
HHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCEEEEHHHHHHHHC
EMHWDGALTPAAFATEIAPSRSYGRVKWAVPAILAGYLRGVPILRGARPSCTASIVGKRV
CCCCCCCCCHHHHHHHCCCCCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
LGGMRLPDEFVRHRVLDLVGDLALAGAPLLARVSAVRPSHEMNFRLVDALLAEPGAWQWA
HCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCC
DFSEA
CCCCC
>Mature Secondary Structure 
SVPTGWATSQGTLARALTIDGHGLHTGRRVGVRILPARPEDGVTGIAFRRVEQGRTLAT
CCCCCCCCCCCCEEEEEEECCCCCCCCCEECEEEECCCCCCCCCHHHHHHHHCCCEEEE
LPVDPALRRAQPLCTMLRNADGVGVRTVEHLLASLLACEIDHAIVELDAEEVPILDGSAT
CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCEECCCCC
PWVDAIRTCGRVALDAPKRFIRVLRTVVVTEGEGEQRREMRIEPAPRYELSVRNDLRGFG
HHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCEEEEHHHHHHHHC
EMHWDGALTPAAFATEIAPSRSYGRVKWAVPAILAGYLRGVPILRGARPSCTASIVGKRV
CCCCCCCCCHHHHHHHCCCCCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
LGGMRLPDEFVRHRVLDLVGDLALAGAPLLARVSAVRPSHEMNFRLVDALLAEPGAWQWA
HCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCC
DFSEA
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: UDP-3-O-(3-Hydroxytetradecanoyl)-N- Acetylglucosamine; H2O [C]

Specific reaction: UDP-3-O-(3-Hydroxytetradecanoyl)-N- Acetylglucosamine + H2O = UDP-3-O-(3-Hydroxytetradecanoyl)- Glucosamine + Acetate. [C]

General reaction: Hydrolase; Acting on carbon-nitrogen bonds, other than peptide bonds; In linear amides [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA