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The map label for this gene is kpsC [H]

Identifier: 126451734

GI number: 126451734

Start: 3208289

End: 3210025

Strand: Direct

Name: kpsC [H]

Synonym: BURPS1106A_3292

Alternate gene names: 126451734

Gene position: 3208289-3210025 (Clockwise)

Preceding gene: 126455035

Following gene: 126455343

Centisome position: 80.44

GC content: 65.75

Gene sequence:

>1737_bases
GTGCAAGCGCTCGATGCGGCACTCGAGCAAGACTGTACTGCGGGCACCGCAGCGGCCGTTGCCGAGTTGATGAAACGCGT
GCTCGCCAGTCACGCAATACGAGGCCGCGACGGGGTGTCGGAATTTCGTGCGCCCCCTCGGCTGCCCGGCGAAACCCGCG
TGTTGCTGATCGACGAGCGCAAGTATTCGCAAGGGATCGGCGCCGTCGCGACGCGCAACAACCGTGGCGCGTTCGAGCGG
ATGATCCGGGCTGCCCGCGCGGCCCATCCAGATGCCGAATTTTGGCTCGCCCGCACGAGAGATCGTGGCTCCGGTGTGTG
GCTATCGGCGTCCGCGGCCGACATCCTCCCTGCCGACATACACCGCCTGGGTGAACACGAATCGCTATGCGCCGCGCTGG
AGCACGTCGACCACGTCTACACGGTGGGCGCCTCCGAGGGAATGCAGGCGCTGCTGGCCGGCCGGCGAGTGCATGTGTTC
GGCGCGCCATACTATGCCGGCTGGGGCCTGACCGACGATGCCGTTCAGTTGCCCGGTCGCCACGCGCGGCCCACACTCGC
GGCGTTGTTCGATGTCGTCTTTCTGCGCTTTGCCCGCTACCTGAATCCCGCCACGCACGCGCCCGGCCGCATCGACGATC
TACTCGACGCGATCGAATGGCAGAACACCGTTCGCCGGCGATTCGCCGATCTGCGGCAGGTGGCCGGCATACGCTTCCAA
TGGTGGAAGCGCCCATTCGCCACCCCATATCTCACGGCCGGGGGCGGAACGCTGAGGTGGACTCGCGACGCAAGCCGTCT
GCGCGAAGGGGAGCACGCCGCGCTCTGGGGGGCACGCGGCACGAACGACTTGCCCCCCGGCACAAGGGTCATACGCATCG
AAGACGGATTCCTGCATTCGACCGGCCTCGGCTCGGACCACGTGGCGCCGTGCAGCCAGGTCATCGATCGAAGCGGCCTC
TATTTCGATCCGAGCCGGCCGAGCGATCTCACGACCATTCTGAACGAAACCGACTTCGACGATGCCGAACTGGTCCGGGC
GAACAGGCTACGCCGCGAAATCGCCCGCCTGGGCCTGACCAAGTACAACCTCGGTCGCCGCAAACCGGCATGGTCCCCTC
CTCCGGGCAAGCGCGTGGTACTCGTACCCGGTCAGGTGGCGGACGATGCCTCCATCCGGCTCGGCACGCGCGGCATTACG
ACCGCGGAAGATCTCCTTCGTGAGGTTCGCGCCAGGCGCCCGGACGCCTTCATCGTCTACAAGCCTCACCCGGACGTCCT
GTCGGGCAATCGCCGGGGGGCAATCGAGGTGAATGCATGGGCCGACCTGATCGAACAGGATGCCGACCTGATCTCGCTGA
TAGAAGTGGCCGACGAGATCCACACCCTTTCGTCGCTGTCCGGCTTCGAAGCGCTGATCCGCGGCAAGGCCGTGCATACC
TATGGTCTGCCGTTCTATGCAGGATGGGGGCTGACGCAGGACGCGCTCGCGCAACCCTGGCGCAAGCGCACGCTTTCTCT
TGATATGCTGACAGCCGGCGTGTTGCTGCGCTATCCGGTCTACTGGGATTGGTCTCTCCGGCTGTTCGCCTCGCCCGAAC
TCGTTGTTCGGCAACTGGCCATTCCGGCCGCGCGACCGCTGACGAGTATCCGCGGCGATCGCCTGCGGCCGGTTCGGAAA
GCATCCCGCTGGATTGCAAGCTGTCTGCGCCATCTCCTCTGGCAATGCGGAAAGTAG

Upstream 100 bases:

>100_bases
TGCCGCATGGCCCGGTCCGATCTGGGCGGAAGTACCGGCCGGAACGCCGCTTCTCTCATGGTTCGTTGTACCGGTCACCC
ACGCCGGACCGGATGCATTC

Downstream 100 bases:

>100_bases
CCACACGGCACGCGCAGCCGCCTCAGGAAAGTCATGGCCATACAGGATCTGTCCGCCCCCGGCCGAGCCGGTGCGGGCGT
GAACGCCGAACGACCACGCG

Product: capsular polysaccharide biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 578; Mature: 578

Protein sequence:

>578_residues
MQALDAALEQDCTAGTAAAVAELMKRVLASHAIRGRDGVSEFRAPPRLPGETRVLLIDERKYSQGIGAVATRNNRGAFER
MIRAARAAHPDAEFWLARTRDRGSGVWLSASAADILPADIHRLGEHESLCAALEHVDHVYTVGASEGMQALLAGRRVHVF
GAPYYAGWGLTDDAVQLPGRHARPTLAALFDVVFLRFARYLNPATHAPGRIDDLLDAIEWQNTVRRRFADLRQVAGIRFQ
WWKRPFATPYLTAGGGTLRWTRDASRLREGEHAALWGARGTNDLPPGTRVIRIEDGFLHSTGLGSDHVAPCSQVIDRSGL
YFDPSRPSDLTTILNETDFDDAELVRANRLRREIARLGLTKYNLGRRKPAWSPPPGKRVVLVPGQVADDASIRLGTRGIT
TAEDLLREVRARRPDAFIVYKPHPDVLSGNRRGAIEVNAWADLIEQDADLISLIEVADEIHTLSSLSGFEALIRGKAVHT
YGLPFYAGWGLTQDALAQPWRKRTLSLDMLTAGVLLRYPVYWDWSLRLFASPELVVRQLAIPAARPLTSIRGDRLRPVRK
ASRWIASCLRHLLWQCGK

Sequences:

>Translated_578_residues
MQALDAALEQDCTAGTAAAVAELMKRVLASHAIRGRDGVSEFRAPPRLPGETRVLLIDERKYSQGIGAVATRNNRGAFER
MIRAARAAHPDAEFWLARTRDRGSGVWLSASAADILPADIHRLGEHESLCAALEHVDHVYTVGASEGMQALLAGRRVHVF
GAPYYAGWGLTDDAVQLPGRHARPTLAALFDVVFLRFARYLNPATHAPGRIDDLLDAIEWQNTVRRRFADLRQVAGIRFQ
WWKRPFATPYLTAGGGTLRWTRDASRLREGEHAALWGARGTNDLPPGTRVIRIEDGFLHSTGLGSDHVAPCSQVIDRSGL
YFDPSRPSDLTTILNETDFDDAELVRANRLRREIARLGLTKYNLGRRKPAWSPPPGKRVVLVPGQVADDASIRLGTRGIT
TAEDLLREVRARRPDAFIVYKPHPDVLSGNRRGAIEVNAWADLIEQDADLISLIEVADEIHTLSSLSGFEALIRGKAVHT
YGLPFYAGWGLTQDALAQPWRKRTLSLDMLTAGVLLRYPVYWDWSLRLFASPELVVRQLAIPAARPLTSIRGDRLRPVRK
ASRWIASCLRHLLWQCGK
>Mature_578_residues
MQALDAALEQDCTAGTAAAVAELMKRVLASHAIRGRDGVSEFRAPPRLPGETRVLLIDERKYSQGIGAVATRNNRGAFER
MIRAARAAHPDAEFWLARTRDRGSGVWLSASAADILPADIHRLGEHESLCAALEHVDHVYTVGASEGMQALLAGRRVHVF
GAPYYAGWGLTDDAVQLPGRHARPTLAALFDVVFLRFARYLNPATHAPGRIDDLLDAIEWQNTVRRRFADLRQVAGIRFQ
WWKRPFATPYLTAGGGTLRWTRDASRLREGEHAALWGARGTNDLPPGTRVIRIEDGFLHSTGLGSDHVAPCSQVIDRSGL
YFDPSRPSDLTTILNETDFDDAELVRANRLRREIARLGLTKYNLGRRKPAWSPPPGKRVVLVPGQVADDASIRLGTRGIT
TAEDLLREVRARRPDAFIVYKPHPDVLSGNRRGAIEVNAWADLIEQDADLISLIEVADEIHTLSSLSGFEALIRGKAVHT
YGLPFYAGWGLTQDALAQPWRKRTLSLDMLTAGVLLRYPVYWDWSLRLFASPELVVRQLAIPAARPLTSIRGDRLRPVRK
ASRWIASCLRHLLWQCGK

Specific function: Unknown

COG id: COG3563

COG function: function code M; Capsule polysaccharide export protein

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To R.meliloti lipopolysaccharide processing protein lpsZ [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007833 [H]

Pfam domain/function: PF05159 Capsule_synth [H]

EC number: NA

Molecular weight: Translated: 64227; Mature: 64227

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: PS00178 AA_TRNA_LIGASE_I

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQALDAALEQDCTAGTAAAVAELMKRVLASHAIRGRDGVSEFRAPPRLPGETRVLLIDER
CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCEEEEEECC
KYSQGIGAVATRNNRGAFERMIRAARAAHPDAEFWLARTRDRGSGVWLSASAADILPADI
HHHCCCCCEEECCCCHHHHHHHHHHHHCCCCHHHHHEECCCCCCCEEEECCCCCCCHHHH
HRLGEHESLCAALEHVDHVYTVGASEGMQALLAGRRVHVFGAPYYAGWGLTDDAVQLPGR
HHCCCHHHHHHHHHHHHHHEECCCHHHHHHHHCCCEEEEEECCEEECCCCCCHHHHCCCC
HARPTLAALFDVVFLRFARYLNPATHAPGRIDDLLDAIEWQNTVRRRFADLRQVAGIRFQ
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
WWKRPFATPYLTAGGGTLRWTRDASRLREGEHAALWGARGTNDLPPGTRVIRIEDGFLHS
HHCCCCCCCEEECCCCEEEECCCHHHHHCCCCEEEECCCCCCCCCCCCEEEEEECCEEEC
TGLGSDHVAPCSQVIDRSGLYFDPSRPSDLTTILNETDFDDAELVRANRLRREIARLGLT
CCCCCCCCCHHHHHHHCCCCEECCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCH
KYNLGRRKPAWSPPPGKRVVLVPGQVADDASIRLGTRGITTAEDLLREVRARRPDAFIVY
HHCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCEEEEE
KPHPDVLSGNRRGAIEVNAWADLIEQDADLISLIEVADEIHTLSSLSGFEALIRGKAVHT
CCCCCCCCCCCCCEEEEHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE
YGLPFYAGWGLTQDALAQPWRKRTLSLDMLTAGVLLRYPVYWDWSLRLFASPELVVRQLA
ECCCEEECCCCCHHHHHCHHHHHHHHHHHHHHHHHHHCCEEEECEEEEECCHHHHHHHHH
IPAARPLTSIRGDRLRPVRKASRWIASCLRHLLWQCGK
CCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQALDAALEQDCTAGTAAAVAELMKRVLASHAIRGRDGVSEFRAPPRLPGETRVLLIDER
CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCEEEEEECC
KYSQGIGAVATRNNRGAFERMIRAARAAHPDAEFWLARTRDRGSGVWLSASAADILPADI
HHHCCCCCEEECCCCHHHHHHHHHHHHCCCCHHHHHEECCCCCCCEEEECCCCCCCHHHH
HRLGEHESLCAALEHVDHVYTVGASEGMQALLAGRRVHVFGAPYYAGWGLTDDAVQLPGR
HHCCCHHHHHHHHHHHHHHEECCCHHHHHHHHCCCEEEEEECCEEECCCCCCHHHHCCCC
HARPTLAALFDVVFLRFARYLNPATHAPGRIDDLLDAIEWQNTVRRRFADLRQVAGIRFQ
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
WWKRPFATPYLTAGGGTLRWTRDASRLREGEHAALWGARGTNDLPPGTRVIRIEDGFLHS
HHCCCCCCCEEECCCCEEEECCCHHHHHCCCCEEEECCCCCCCCCCCCEEEEEECCEEEC
TGLGSDHVAPCSQVIDRSGLYFDPSRPSDLTTILNETDFDDAELVRANRLRREIARLGLT
CCCCCCCCCHHHHHHHCCCCEECCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCH
KYNLGRRKPAWSPPPGKRVVLVPGQVADDASIRLGTRGITTAEDLLREVRARRPDAFIVY
HHCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCEEEEE
KPHPDVLSGNRRGAIEVNAWADLIEQDADLISLIEVADEIHTLSSLSGFEALIRGKAVHT
CCCCCCCCCCCCCEEEEHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE
YGLPFYAGWGLTQDALAQPWRKRTLSLDMLTAGVLLRYPVYWDWSLRLFASPELVVRQLA
ECCCEEECCCCCHHHHHCHHHHHHHHHHHHHHHHHHHCCEEEECEEEEECCHHHHHHHHH
IPAARPLTSIRGDRLRPVRKASRWIASCLRHLLWQCGK
CCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8397187; 7875563 [H]