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The map label for this gene is ygaD [H]

Identifier: 126451690

GI number: 126451690

Start: 3385141

End: 3385641

Strand: Direct

Name: ygaD [H]

Synonym: BURPS1106A_3479

Alternate gene names: 126451690

Gene position: 3385141-3385641 (Clockwise)

Preceding gene: 126454812

Following gene: 126452033

Centisome position: 84.87

GC content: 70.46

Gene sequence:

>501_bases
ATGCCAACCGATTCCGTCGTCCACCAGCTCGCCATCCGCGTCGGCAACAAGCTGCGCGACGAGCACCTGACGCTCGTCAC
CGCCGAGTCCTGCACGGGCGGCATGATCGCGACCGCGATCACCGACATCTCCGGCAGCAGCGGCTGGTTCGAGCGCGGCT
TCGTCACCTATTCGAACGCCGCGAAGATCGAGATGATCGGCGTGCCCGCCGACCTGATCGACAAGCACGGCGCGGTCAGC
GAGCCCGTCGCGCGCGCGATGGTCGAGGGCGCGCTGCGCAACAGCCGCGCGCAGGTCGCGCTCGCCGTCACCGGCATCGC
CGGGCCGGGCGGCGGCTCCGAGCACAAGCCCGTCGGCACCGTGTCGTTCGGCTGGAGCAACCGGCTGCACACGTCGGTCG
AGACGCTCGTGTTCAAGGGCGATCGCGAGCAGATCCGCGTGCAGGCGGCCGCGCACGCGCTGCGCGGCCTCGTCAAGCTG
ATCGACGAGCAGGAGCGCTGA

Upstream 100 bases:

>100_bases
GCCGCGCTGATGACGCTCTTCGTGATCGCGCTGTGGCGCTCGTTCGGCGTGCAATGACGCCGCGCGCCCGTTCGTCCCCG
CTCGCACCGGAACTTCCCGC

Downstream 100 bases:

>100_bases
AGCGCTCGGCGCTTTCGCCGCGCGCGGGCGCCGTCGAATCGGCCCGAATCTAGGCCGAAACTTGGCCGAATCAGCAGGCC
GAATCACTCGGCCGAATCAT

Product: cinA family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 165

Protein sequence:

>166_residues
MPTDSVVHQLAIRVGNKLRDEHLTLVTAESCTGGMIATAITDISGSSGWFERGFVTYSNAAKIEMIGVPADLIDKHGAVS
EPVARAMVEGALRNSRAQVALAVTGIAGPGGGSEHKPVGTVSFGWSNRLHTSVETLVFKGDREQIRVQAAAHALRGLVKL
IDEQER

Sequences:

>Translated_166_residues
MPTDSVVHQLAIRVGNKLRDEHLTLVTAESCTGGMIATAITDISGSSGWFERGFVTYSNAAKIEMIGVPADLIDKHGAVS
EPVARAMVEGALRNSRAQVALAVTGIAGPGGGSEHKPVGTVSFGWSNRLHTSVETLVFKGDREQIRVQAAAHALRGLVKL
IDEQER
>Mature_165_residues
PTDSVVHQLAIRVGNKLRDEHLTLVTAESCTGGMIATAITDISGSSGWFERGFVTYSNAAKIEMIGVPADLIDKHGAVSE
PVARAMVEGALRNSRAQVALAVTGIAGPGGGSEHKPVGTVSFGWSNRLHTSVETLVFKGDREQIRVQAAAHALRGLVKLI
DEQER

Specific function: Unknown

COG id: COG1546

COG function: function code R; Uncharacterized protein (competence- and mitomycin-induced)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CinA family [H]

Homologues:

Organism=Escherichia coli, GI1789052, Length=156, Percent_Identity=54.4871794871795, Blast_Score=162, Evalue=9e-42,
Organism=Escherichia coli, GI1787818, Length=143, Percent_Identity=35.6643356643357, Blast_Score=98, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008136 [H]

Pfam domain/function: PF02464 CinA [H]

EC number: NA

Molecular weight: Translated: 17598; Mature: 17467

Theoretical pI: Translated: 7.17; Mature: 7.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTDSVVHQLAIRVGNKLRDEHLTLVTAESCTGGMIATAITDISGSSGWFERGFVTYSNA
CCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCEEEHHEECCCCCCCCCCCCEEEECCC
AKIEMIGVPADLIDKHGAVSEPVARAMVEGALRNSRAQVALAVTGIAGPGGGSEHKPVGT
CEEEEEECCHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCEE
VSFGWSNRLHTSVETLVFKGDREQIRVQAAAHALRGLVKLIDEQER
EECCCCCCHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
PTDSVVHQLAIRVGNKLRDEHLTLVTAESCTGGMIATAITDISGSSGWFERGFVTYSNA
CCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCEEEHHEECCCCCCCCCCCCEEEECCC
AKIEMIGVPADLIDKHGAVSEPVARAMVEGALRNSRAQVALAVTGIAGPGGGSEHKPVGT
CEEEEEECCHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCEE
VSFGWSNRLHTSVETLVFKGDREQIRVQAAAHALRGLVKLIDEQER
EECCCCCCHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]