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The map label for this gene is ybgI [C]

Identifier: 126451667

GI number: 126451667

Start: 3625598

End: 3626344

Strand: Reverse

Name: ybgI [C]

Synonym: BURPS1106A_3708

Alternate gene names: 126451667

Gene position: 3626344-3625598 (Counterclockwise)

Preceding gene: 126454343

Following gene: 126454818

Centisome position: 90.92

GC content: 63.59

Gene sequence:

>747_bases
ATGGATCGGATCGAACTTGAATTGTACTTGAACAATACCCTCGAAATCGGGCGGTTCAAGGACTACAGCCCGAACGGCCT
CCAGGTGGAAGGCCGTCGCAAGATTGAAAAAATCGCCACCGGCGTGACGGCCTCGCTCGCGTTTCTCGATCGCGCGCTCG
AATGGGGCGCGGACGCGGTGCTCGTCCATCACGGCTACTTCTGGCGCCATGAGGCGCCGCAAATTACGGGCCGCAAGTAT
CAGCGCCTCAAGCGCCTGCTCGCGAACGATCTGAACCTGTTCGCGTTCCATTTGCCGCTCGACGCGCATCCCGAATTCGG
CAACAACGCGCAGCTCGGCGAGCGCCTCGGCCTCATCGGCGACGCGCGTTTCGGCGATCAGGACCTCGGCTGGCTCGCGA
CGCTGCCGATGCCCGTCTCGCTCGAGCACTTCACCGCGAAGGTCGAGAACACGCTCGGCCGCGCGCCGCTCGTGCTCGGC
GATCTGGACCAGCAACTGCGCCGCGTCGCGTGGTGCACGGGCGGCGCGCAGAGCTTCTTCGATGCCGCGATCGAAGCGGG
CGCCGACGTGTTCCTGACGGGCGAAGTGTCCGAGCACGTGACGCACGCGGCGGCCGAAAGCGGCGTGGCGTTCGTTGCGG
CGGGGCACCATGCGACCGAGCGTTTCGGCATCCAGGCGCTCGGCCAGCATTTATCGGAGCGTTTTGATCTCGAACATATT
TTTATCGACATTCATAACCCGGTTTAA

Upstream 100 bases:

>100_bases
TGAGCGTCGCCACGATGAACATCAGTGCGAGCAGCACCGTCACCGCTTGGGCGAAGAACAGCCAGAAGCGTCTAAGCATT
TGAAGATACTAGAGGTTTAT

Downstream 100 bases:

>100_bases
TTGCACAAATTGCCGCACCGCATCGAAAACAAAATATGCCGCGGTGCACATTTCTCGCATTATCGAAACGGGAACCTCGA
TAGCCCGGGGAAACCCTTGA

Product: NIF3 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MDRIELELYLNNTLEIGRFKDYSPNGLQVEGRRKIEKIATGVTASLAFLDRALEWGADAVLVHHGYFWRHEAPQITGRKY
QRLKRLLANDLNLFAFHLPLDAHPEFGNNAQLGERLGLIGDARFGDQDLGWLATLPMPVSLEHFTAKVENTLGRAPLVLG
DLDQQLRRVAWCTGGAQSFFDAAIEAGADVFLTGEVSEHVTHAAAESGVAFVAAGHHATERFGIQALGQHLSERFDLEHI
FIDIHNPV

Sequences:

>Translated_248_residues
MDRIELELYLNNTLEIGRFKDYSPNGLQVEGRRKIEKIATGVTASLAFLDRALEWGADAVLVHHGYFWRHEAPQITGRKY
QRLKRLLANDLNLFAFHLPLDAHPEFGNNAQLGERLGLIGDARFGDQDLGWLATLPMPVSLEHFTAKVENTLGRAPLVLG
DLDQQLRRVAWCTGGAQSFFDAAIEAGADVFLTGEVSEHVTHAAAESGVAFVAAGHHATERFGIQALGQHLSERFDLEHI
FIDIHNPV
>Mature_248_residues
MDRIELELYLNNTLEIGRFKDYSPNGLQVEGRRKIEKIATGVTASLAFLDRALEWGADAVLVHHGYFWRHEAPQITGRKY
QRLKRLLANDLNLFAFHLPLDAHPEFGNNAQLGERLGLIGDARFGDQDLGWLATLPMPVSLEHFTAKVENTLGRAPLVLG
DLDQQLRRVAWCTGGAQSFFDAAIEAGADVFLTGEVSEHVTHAAAESGVAFVAAGHHATERFGIQALGQHLSERFDLEHI
FIDIHNPV

Specific function: Unknown

COG id: COG0327

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0135 (NIF3) family [H]

Homologues:

Organism=Escherichia coli, GI1786928, Length=248, Percent_Identity=54.4354838709677, Blast_Score=258, Evalue=2e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002678 [H]

Pfam domain/function: PF01784 NIF3 [H]

EC number: NA

Molecular weight: Translated: 27524; Mature: 27524

Theoretical pI: Translated: 5.87; Mature: 5.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRIELELYLNNTLEIGRFKDYSPNGLQVEGRRKIEKIATGVTASLAFLDRALEWGADAV
CCEEEEEEEECCEEEECCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
LVHHGYFWRHEAPQITGRKYQRLKRLLANDLNLFAFHLPLDAHPEFGNNAQLGERLGLIG
EEECCEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHCCCC
DARFGDQDLGWLATLPMPVSLEHFTAKVENTLGRAPLVLGDLDQQLRRVAWCTGGAQSFF
CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHCCCHHHHH
DAAIEAGADVFLTGEVSEHVTHAAAESGVAFVAAGHHATERFGIQALGQHLSERFDLEHI
HHHHHCCCCEEEECCHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHHHCCEEEE
FIDIHNPV
EEEECCCC
>Mature Secondary Structure
MDRIELELYLNNTLEIGRFKDYSPNGLQVEGRRKIEKIATGVTASLAFLDRALEWGADAV
CCEEEEEEEECCEEEECCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
LVHHGYFWRHEAPQITGRKYQRLKRLLANDLNLFAFHLPLDAHPEFGNNAQLGERLGLIG
EEECCEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHCCCC
DARFGDQDLGWLATLPMPVSLEHFTAKVENTLGRAPLVLGDLDQQLRRVAWCTGGAQSFF
CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHCCCHHHHH
DAAIEAGADVFLTGEVSEHVTHAAAESGVAFVAAGHHATERFGIQALGQHLSERFDLEHI
HHHHHCCCCEEEECCHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHHHCCEEEE
FIDIHNPV
EEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11823852 [H]