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The map label for this gene is yecS [H]

Identifier: 126451643

GI number: 126451643

Start: 1852431

End: 1853174

Strand: Direct

Name: yecS [H]

Synonym: BURPS1106A_1899

Alternate gene names: 126451643

Gene position: 1852431-1853174 (Clockwise)

Preceding gene: 126452880

Following gene: 126454315

Centisome position: 46.44

GC content: 71.1

Gene sequence:

>744_bases
ATGGATCTGTCGATACTCGCGAACAATCTGCCGTACCTGCTCGTCGGCGCGTTTCCGGACGGCCCGCTCGGCGGCGCCGC
GCTGTCGCTCGTGCTCGCGCTCGCATCGGCGCTGGCGTCGGCCGGGCTGGGCGTCGCGCTCGGCGTCGCGCTCGCGCTCG
CGACGGGGGCGCTGCGCGGCGCGCTCGTCGTCGTGATCGGTTTTTTTCGTGCGATTCCGGTGCTGATGCTGATCTTCTGG
ACGTACTTCCTGTTGCCGGTGCTGCTGCACGCGGACGTGCCGGGGCTCGCGGCCGTCGTGTGCGCGCTGTCGCTCGTCGG
CGGCGCGTATCTCGCGCATTCGGTGCACGCGGGCATCCGGGCCGCGGGCGACGGGCAATGGCAGGCCGGGCTGTCGCTCG
GGCTCACGCGCTGGCAGACGGTGCGCCACGTGCTGCTGCCGCAGGCGGTCAGGATCATGACGCCGTCGTTCGTCAATCAG
TGGGTGTCGCTCGTGAAGGATACGTCGCTCGCGTACATCGTCGGCGTGCCGGAGCTGTCGTTCGTCGCGACCCAGGTCAA
CAATCGGCTGATGGTGTATCCCGCGCAGATCTTCCTGTTCGTCGGCGTGATCTACCTGATTCTCTGCACCGCGCTCGACG
TCGCGGCGACGCGGCTGCTCGCGCATCGGCGGCGGCGCGCGCCGCGCGGCGACGATGCGACGCGCGCGAGCGCCGCGCAG
CCGGCGGCGGGCGGGCCGCGATAG

Upstream 100 bases:

>100_bases
GCGTGTCGACCGTGCTGTACGTCGCGGCGGTCGCGCTGGTCGAGGCGGCCGCGCAATGGACGCTGCGGCGGCGCGATCGC
ACGTTCGCGGGGCGCTGACG

Downstream 100 bases:

>100_bases
GACGATTCGCGTCCGGGACGCGGCGCGGCGTCACCGCGCCGTCACGACGTCGCGTAATGCGTGTTGAAGATCGCGCGCAG
CGTCGACGTATCGGTGGCGA

Product: His/Glu/Gln/Arg/opine amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MDLSILANNLPYLLVGAFPDGPLGGAALSLVLALASALASAGLGVALGVALALATGALRGALVVVIGFFRAIPVLMLIFW
TYFLLPVLLHADVPGLAAVVCALSLVGGAYLAHSVHAGIRAAGDGQWQAGLSLGLTRWQTVRHVLLPQAVRIMTPSFVNQ
WVSLVKDTSLAYIVGVPELSFVATQVNNRLMVYPAQIFLFVGVIYLILCTALDVAATRLLAHRRRRAPRGDDATRASAAQ
PAAGGPR

Sequences:

>Translated_247_residues
MDLSILANNLPYLLVGAFPDGPLGGAALSLVLALASALASAGLGVALGVALALATGALRGALVVVIGFFRAIPVLMLIFW
TYFLLPVLLHADVPGLAAVVCALSLVGGAYLAHSVHAGIRAAGDGQWQAGLSLGLTRWQTVRHVLLPQAVRIMTPSFVNQ
WVSLVKDTSLAYIVGVPELSFVATQVNNRLMVYPAQIFLFVGVIYLILCTALDVAATRLLAHRRRRAPRGDDATRASAAQ
PAAGGPR
>Mature_247_residues
MDLSILANNLPYLLVGAFPDGPLGGAALSLVLALASALASAGLGVALGVALALATGALRGALVVVIGFFRAIPVLMLIFW
TYFLLPVLLHADVPGLAAVVCALSLVGGAYLAHSVHAGIRAAGDGQWQAGLSLGLTRWQTVRHVLLPQAVRIMTPSFVNQ
WVSLVKDTSLAYIVGVPELSFVATQVNNRLMVYPAQIFLFVGVIYLILCTALDVAATRLLAHRRRRAPRGDDATRASAAQ
PAAGGPR

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=235, Percent_Identity=32.3404255319149, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1786873, Length=238, Percent_Identity=28.5714285714286, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1787030, Length=168, Percent_Identity=33.9285714285714, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI87082239, Length=201, Percent_Identity=30.8457711442786, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI48994930, Length=199, Percent_Identity=32.6633165829146, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787086, Length=218, Percent_Identity=30.2752293577982, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787087, Length=141, Percent_Identity=30.4964539007092, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1788646, Length=218, Percent_Identity=26.1467889908257, Blast_Score=64, Evalue=6e-12,
Organism=Escherichia coli, GI1786874, Length=221, Percent_Identity=24.8868778280543, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 25805; Mature: 25805

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLSILANNLPYLLVGAFPDGPLGGAALSLVLALASALASAGLGVALGVALALATGALRG
CCHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
ALVVVIGFFRAIPVLMLIFWTYFLLPVLLHADVPGLAAVVCALSLVGGAYLAHSVHAGIR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
AAGDGQWQAGLSLGLTRWQTVRHVLLPQAVRIMTPSFVNQWVSLVKDTSLAYIVGVPELS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCEEEEEECCCHH
FVATQVNNRLMVYPAQIFLFVGVIYLILCTALDVAATRLLAHRRRRAPRGDDATRASAAQ
HHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCC
PAAGGPR
CCCCCCC
>Mature Secondary Structure
MDLSILANNLPYLLVGAFPDGPLGGAALSLVLALASALASAGLGVALGVALALATGALRG
CCHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
ALVVVIGFFRAIPVLMLIFWTYFLLPVLLHADVPGLAAVVCALSLVGGAYLAHSVHAGIR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
AAGDGQWQAGLSLGLTRWQTVRHVLLPQAVRIMTPSFVNQWVSLVKDTSLAYIVGVPELS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCEEEEEECCCHH
FVATQVNNRLMVYPAQIFLFVGVIYLILCTALDVAATRLLAHRRRRAPRGDDATRASAAQ
HHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCC
PAAGGPR
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]