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The map label for this gene is oxyR [H]

Identifier: 126451577

GI number: 126451577

Start: 3276878

End: 3277837

Strand: Reverse

Name: oxyR [H]

Synonym: BURPS1106A_3358

Alternate gene names: 126451577

Gene position: 3277837-3276878 (Counterclockwise)

Preceding gene: 126452909

Following gene: 126454400

Centisome position: 82.18

GC content: 65.73

Gene sequence:

>960_bases
ATGACGCTTACCGAACTGAAGTACATCGTCGCGGTCGCGCGCGAACGCCATTTCGGCCGGGCGGCCGAAGCCTGCTTCGT
CAGTCAGCCGACGCTGTCGGTCGCGATCAAGAAGCTGGAAGACGAGTTGAACGTGCAGATCTTCGAGCGCGGCGCGAGCG
AAGTGAGCGTGACGCCGGTCGGCGACCAGATCGTCACGCAAGCGCAGCGCGTGCTCGAGCAGACGTTCGCGATCAAGGAG
ATCGCGAAGCAGGGCAAGGATCCGCTCATCGGGCCGTTCCGGCTCGGCGTGATCTACACGATCGGGCCCTATCTGCTGCC
GACGCTCGTCAAGCAGATGATCCGCCGCGTGCCGCAAATGCCGCTGATGCTGCAGGAGAACTACACGCTCAAGCTGCTCG
AGCTGCTCAAGCAAGGCGAGATCGACGCGGCGATCATGGCGTTGCCGTTTCCCGAAACCGGCCTGATGGTGCGGGCGCTG
TACGACGAGCCGTTCGTCGTCGCGCTCCCCGCCGGGCATCCGTGGGAGAAGCGCCGCAAGATCGACGCGGCCGACCTGAA
GCAGGAGACGATGCTGCTGCTCGGCAATGGCCACTGTTTCCGCGATCATGTGCTCGGCGTGTGCCCGGAGCTGATGCACT
TCTCGCAGACGGCGGACGGCATCCAGAAGACGTTCGAGGGCTCGTCGCTCGAGACGATCCGCCATATGGTCGCGAGCGGC
GTCGGGATCACGGTGCTGCCCCGGATGTCGGTCGCCGAGGTGGGGCCGCATGCGAGCGGGCCCGATGCTGACTTGCTGTC
GTACGTGCCGTTCGAGGATCCGGTGCCGGATCGGCGCGTCGTGCTCGTGTGGCGCAAGAGCTTCACGCGGATGCCGGCGA
TCGACGCGATCAGCGAGGCGATCGCCGCGTGCGGGCTGCCCGGGGTGACGAAGCTCGATATCCCGGCGACGGTGAATTGA

Upstream 100 bases:

>100_bases
GCGCGCTTCGGACAGGCTTGTTTTCGGCGAAGGTTGGCGAATCGACCCAAACCAGTGTATAAATTTAATCTATCGTCATT
AAATGATTGATTAACTTGCG

Downstream 100 bases:

>100_bases
GCGCGGCGAGCGCGGCTGCGGGCCGCCGCGCGCCGTGATCGGACGGGGCTTCGGGGCCCCGTTTATTTTTGCCTATCGGA
TAAATAAAATTTATTAAATT

Product: oxidative stress regulatory protein OxyR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MTLTELKYIVAVARERHFGRAAEACFVSQPTLSVAIKKLEDELNVQIFERGASEVSVTPVGDQIVTQAQRVLEQTFAIKE
IAKQGKDPLIGPFRLGVIYTIGPYLLPTLVKQMIRRVPQMPLMLQENYTLKLLELLKQGEIDAAIMALPFPETGLMVRAL
YDEPFVVALPAGHPWEKRRKIDAADLKQETMLLLGNGHCFRDHVLGVCPELMHFSQTADGIQKTFEGSSLETIRHMVASG
VGITVLPRMSVAEVGPHASGPDADLLSYVPFEDPVPDRRVVLVWRKSFTRMPAIDAISEAIAACGLPGVTKLDIPATVN

Sequences:

>Translated_319_residues
MTLTELKYIVAVARERHFGRAAEACFVSQPTLSVAIKKLEDELNVQIFERGASEVSVTPVGDQIVTQAQRVLEQTFAIKE
IAKQGKDPLIGPFRLGVIYTIGPYLLPTLVKQMIRRVPQMPLMLQENYTLKLLELLKQGEIDAAIMALPFPETGLMVRAL
YDEPFVVALPAGHPWEKRRKIDAADLKQETMLLLGNGHCFRDHVLGVCPELMHFSQTADGIQKTFEGSSLETIRHMVASG
VGITVLPRMSVAEVGPHASGPDADLLSYVPFEDPVPDRRVVLVWRKSFTRMPAIDAISEAIAACGLPGVTKLDIPATVN
>Mature_318_residues
TLTELKYIVAVARERHFGRAAEACFVSQPTLSVAIKKLEDELNVQIFERGASEVSVTPVGDQIVTQAQRVLEQTFAIKEI
AKQGKDPLIGPFRLGVIYTIGPYLLPTLVKQMIRRVPQMPLMLQENYTLKLLELLKQGEIDAAIMALPFPETGLMVRALY
DEPFVVALPAGHPWEKRRKIDAADLKQETMLLLGNGHCFRDHVLGVCPELMHFSQTADGIQKTFEGSSLETIRHMVASGV
GITVLPRMSVAEVGPHASGPDADLLSYVPFEDPVPDRRVVLVWRKSFTRMPAIDAISEAIAACGLPGVTKLDIPATVN

Specific function: Required for the induction of a regulon of hydrogen peroxide inducible genes such as catalase and glutathione- reductase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790399, Length=303, Percent_Identity=39.6039603960396, Blast_Score=211, Evalue=6e-56,
Organism=Escherichia coli, GI1787530, Length=261, Percent_Identity=27.5862068965517, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1788748, Length=315, Percent_Identity=26.984126984127, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI157672245, Length=311, Percent_Identity=26.0450160771704, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI2367136, Length=242, Percent_Identity=28.5123966942149, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI145693105, Length=298, Percent_Identity=26.510067114094, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1788887, Length=292, Percent_Identity=26.7123287671233, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787879, Length=303, Percent_Identity=26.0726072607261, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1787601, Length=189, Percent_Identity=26.984126984127, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI87081904, Length=176, Percent_Identity=32.3863636363636, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1787806, Length=297, Percent_Identity=23.2323232323232, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790262, Length=259, Percent_Identity=25.4826254826255, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1788481, Length=251, Percent_Identity=23.9043824701195, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788296, Length=172, Percent_Identity=27.3255813953488, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35146; Mature: 35014

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLTELKYIVAVARERHFGRAAEACFVSQPTLSVAIKKLEDELNVQIFERGASEVSVTPV
CCHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHCHHHEECCCCEEEECCC
GDQIVTQAQRVLEQTFAIKEIAKQGKDPLIGPFRLGVIYTIGPYLLPTLVKQMIRRVPQM
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PLMLQENYTLKLLELLKQGEIDAAIMALPFPETGLMVRALYDEPFVVALPAGHPWEKRRK
CEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEECCCCEEEEECCCCCHHHHHC
IDAADLKQETMLLLGNGHCFRDHVLGVCPELMHFSQTADGIQKTFEGSSLETIRHMVASG
CCHHHHCHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
VGITVLPRMSVAEVGPHASGPDADLLSYVPFEDPVPDRRVVLVWRKSFTRMPAIDAISEA
CCEEEECCCHHHHCCCCCCCCCHHHHCCCCCCCCCCCCEEEEEEEHHCCCCCHHHHHHHH
IAACGLPGVTKLDIPATVN
HHHCCCCCCEEECCCCCCC
>Mature Secondary Structure 
TLTELKYIVAVARERHFGRAAEACFVSQPTLSVAIKKLEDELNVQIFERGASEVSVTPV
CHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHCHHHEECCCCEEEECCC
GDQIVTQAQRVLEQTFAIKEIAKQGKDPLIGPFRLGVIYTIGPYLLPTLVKQMIRRVPQM
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PLMLQENYTLKLLELLKQGEIDAAIMALPFPETGLMVRALYDEPFVVALPAGHPWEKRRK
CEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEECCCCEEEEECCCCCHHHHHC
IDAADLKQETMLLLGNGHCFRDHVLGVCPELMHFSQTADGIQKTFEGSSLETIRHMVASG
CCHHHHCHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
VGITVLPRMSVAEVGPHASGPDADLLSYVPFEDPVPDRRVVLVWRKSFTRMPAIDAISEA
CCEEEECCCHHHHCCCCCCCCCHHHHCCCCCCCCCCCCEEEEEEEHHCCCCCHHHHHHHH
IAACGLPGVTKLDIPATVN
HHHCCCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA