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The map label for this gene is yoaA [H]

Identifier: 126451573

GI number: 126451573

Start: 2196198

End: 2198447

Strand: Reverse

Name: yoaA [H]

Synonym: BURPS1106A_2207

Alternate gene names: 126451573

Gene position: 2198447-2196198 (Counterclockwise)

Preceding gene: 126452675

Following gene: 126454439

Centisome position: 55.12

GC content: 69.38

Gene sequence:

>2250_bases
TTGAATTCACCGCTTGATGCCCATCCCGACGCGCGGCGCGACGATCCGTCCGCCGCACGTTCCCCCACGTCCGGCGCCGC
CACGGGCGCGTACACGCCGAGCGTAAAGCGTATCGTCGAGCTTGACGCCATCTTCGGCGAGGGCGGCCTGTTTGCGCGCG
CGCTCGACAACTATCGTCCGCGCGCTTCGCAGATCGACATGGCGCGCGCCGTTGCCGCCGCGATGGAGGCGTCGGGCAAG
CTAATGCCGGAGCCCGAGATCTTCGAGACGCGCAAGCGCCCCGCGCGGCGCATGCAGGACGGCGCAGCCGCCGGCCGTGA
CGATGCGTGCGCCGCGCCGCCCGGCGACGAGAGCGCCGACAGCGGCGACAATACGTTGATCGTCGAGGCCGGCACCGGCA
CCGGCAAGACATACGCATACCTCGTCCCGGCGATGCTCTGGGGCGGCAAGGTGATCGTGTCGACGGGCACGAAGCACCTG
CAGGATCAATTGTTCCAGCGCGACATCCCGACGGTGCGCGACGCGCTCGCGGTGCCGGTGACGGTCGCGATGCTCAAGGG
GCGCGCGAACTACCTGTGCCACTACTATCTGCAGCGGACCGCCGACAACGGCCGCCTGCCGTCGCGGCAGGACACCGCGT
ACCTGCAGGACATCCTCCGCTTCGCGAAGATCACCAGGAGCGGCGACAAGGCCGAGCTCGCGAGCGTGCCGGAGACGTCG
CCCGTGTGGTCGATGGTCACGTCCACGCGTGACAACTGCCTCGGCCAGGAATGTCCGCATTACAAGGACTGCTTCGTGAT
GCAGGCGCGCCGCGAGGCGCAGCAGGCGGATATCGTCGTCGTCAATCACCATCTGTTCTTCGCGGACATCATGTTGCGCG
ACACCGGGATGGCCGAATTGCTGCCGAGCGCGAACACGATCATCTTCGACGAGGCGCACCAGTTGCCCGAGACCGCGACG
CTCTTTTTCGGCGAGACGCTATCGACGACGCAACTGCTCGAGCTCGCGCGCGACGCGGTGGCCGAAGGCCTCGCGCACGC
GCGCGACGCGGTCGAATGGGTGAAGCTCGGCGGCGCGCTCGAGCGTGCGTCGCGCGACGTGCGGCTCGCGTTCGCCGACG
ACGGCATCGTCCGGATGTCGCTCGCGCAGCTCGGCGACGGTCATCCGCTGTTCGGCGCGCTCGATGCGCTCGACGCGGCG
CTCGATGCGCTGTCGACGGCGCTTGCGGGGCAGGCGGAGCGTGCCGAATCGATCGCCGCGTGCCAGCGCCGCGCGCGCGA
GCTGCAGGATCTGCTGGCGGGCTGGGTCGCGCCCGGCGCGCAGGACGGCGCGGCCGACGCGAAGCCCGCCGCGCAAACGG
GCGAGCACGGCGATCCGGCCGAGAAGGTGCGTTGGGTCGAGGTGTTCGCGCATACCGTTCAGTTGCATGAAACGCCGCTG
TCGGTCGCGCCGATTTTCGCGAAGCAGCGCGCGGGCGTGCCGCGCGCGTGGATCTTCACGTCGGCGACGCTGTCGGTGCG
TGGCGATTTCACGCACTACGCGGCGCAGATGGGCCTCAGTTCGCGCCGTTCGATGACGCTGCCGAGCCCGTTCGACTATC
AGGCGCAAGGGCTTCTGTACGTGCCGAGGAACCTGCCGCAGCCGTCGTCGCCCGCGTTCACCGACGCGGTGTTCGACGCC
GCGCTGCCGGCGATCGAGGCGTCGGGCGGCGGCGTGTTCGTGCTGTGCACGACGCTGCGCGCGGTCGACCGAATCGCGAT
GAAGTTGCGCGACACGATCGACGCGCGCGGCTGGAGCACGCCGCTCCTCGTACAGGGCGATGCGAGCCGCACCGAACTGC
TCGACCGCTTTCGCGCCTACGGCAACGCGATTCTCGTCGGCAGCCAGAGCTTCTGGGAAGGCGTCGACGTGCGCGGCGAC
GCGCTATCGCTCGTCGTGATCGACAAGCTGCCGTTCGCGCCGCCCGACGATCCGGTGCTCGCCGCGCGGCTCGATGCGCT
GACGAAAAAAGGGCTGAGCCCGTTCGCCGTCCATCAGTTGCCGCAGGCCGTCATCACGCTGAAGCAGGGGGCGGGGCGGC
TGATTCGCGCGGAGACGGATCGCGGCGTGCTGATGATCTGCGACACGCGCCTCGTCGACAAGCCGTATGGCCGGCGCATC
TGGCAGAGCCTGCCGCCTTTCAAGCGCACGCGCGAGATCGACGTGGTGCGCGAGTTCTTCGCCGAGCGGCGCGAAGCCGA
GCAGGCGTGA

Upstream 100 bases:

>100_bases
TGCTGCAATCGCAGCTCGAACCGGATAAGCGCGCCTGACGCGCGGCCTGGCAAGCGCCGGCGCCGCGGCAGGCGCCGGAT
GATATTAGGAACCGCTTGCC

Downstream 100 bases:

>100_bases
GCGCGCAGGCTGGCGGCGTGGCGTGACGCAACGCGCGCCCGCCGCGCGACGCGCGCCGTGACAGGTGCGCCGCGCGCGCG
AAAAGAAAAACCCGGCTCGA

Product: putative ATP-dependent helicase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 749; Mature: 749

Protein sequence:

>749_residues
MNSPLDAHPDARRDDPSAARSPTSGAATGAYTPSVKRIVELDAIFGEGGLFARALDNYRPRASQIDMARAVAAAMEASGK
LMPEPEIFETRKRPARRMQDGAAAGRDDACAAPPGDESADSGDNTLIVEAGTGTGKTYAYLVPAMLWGGKVIVSTGTKHL
QDQLFQRDIPTVRDALAVPVTVAMLKGRANYLCHYYLQRTADNGRLPSRQDTAYLQDILRFAKITRSGDKAELASVPETS
PVWSMVTSTRDNCLGQECPHYKDCFVMQARREAQQADIVVVNHHLFFADIMLRDTGMAELLPSANTIIFDEAHQLPETAT
LFFGETLSTTQLLELARDAVAEGLAHARDAVEWVKLGGALERASRDVRLAFADDGIVRMSLAQLGDGHPLFGALDALDAA
LDALSTALAGQAERAESIAACQRRARELQDLLAGWVAPGAQDGAADAKPAAQTGEHGDPAEKVRWVEVFAHTVQLHETPL
SVAPIFAKQRAGVPRAWIFTSATLSVRGDFTHYAAQMGLSSRRSMTLPSPFDYQAQGLLYVPRNLPQPSSPAFTDAVFDA
ALPAIEASGGGVFVLCTTLRAVDRIAMKLRDTIDARGWSTPLLVQGDASRTELLDRFRAYGNAILVGSQSFWEGVDVRGD
ALSLVVIDKLPFAPPDDPVLAARLDALTKKGLSPFAVHQLPQAVITLKQGAGRLIRAETDRGVLMICDTRLVDKPYGRRI
WQSLPPFKRTREIDVVREFFAERREAEQA

Sequences:

>Translated_749_residues
MNSPLDAHPDARRDDPSAARSPTSGAATGAYTPSVKRIVELDAIFGEGGLFARALDNYRPRASQIDMARAVAAAMEASGK
LMPEPEIFETRKRPARRMQDGAAAGRDDACAAPPGDESADSGDNTLIVEAGTGTGKTYAYLVPAMLWGGKVIVSTGTKHL
QDQLFQRDIPTVRDALAVPVTVAMLKGRANYLCHYYLQRTADNGRLPSRQDTAYLQDILRFAKITRSGDKAELASVPETS
PVWSMVTSTRDNCLGQECPHYKDCFVMQARREAQQADIVVVNHHLFFADIMLRDTGMAELLPSANTIIFDEAHQLPETAT
LFFGETLSTTQLLELARDAVAEGLAHARDAVEWVKLGGALERASRDVRLAFADDGIVRMSLAQLGDGHPLFGALDALDAA
LDALSTALAGQAERAESIAACQRRARELQDLLAGWVAPGAQDGAADAKPAAQTGEHGDPAEKVRWVEVFAHTVQLHETPL
SVAPIFAKQRAGVPRAWIFTSATLSVRGDFTHYAAQMGLSSRRSMTLPSPFDYQAQGLLYVPRNLPQPSSPAFTDAVFDA
ALPAIEASGGGVFVLCTTLRAVDRIAMKLRDTIDARGWSTPLLVQGDASRTELLDRFRAYGNAILVGSQSFWEGVDVRGD
ALSLVVIDKLPFAPPDDPVLAARLDALTKKGLSPFAVHQLPQAVITLKQGAGRLIRAETDRGVLMICDTRLVDKPYGRRI
WQSLPPFKRTREIDVVREFFAERREAEQA
>Mature_749_residues
MNSPLDAHPDARRDDPSAARSPTSGAATGAYTPSVKRIVELDAIFGEGGLFARALDNYRPRASQIDMARAVAAAMEASGK
LMPEPEIFETRKRPARRMQDGAAAGRDDACAAPPGDESADSGDNTLIVEAGTGTGKTYAYLVPAMLWGGKVIVSTGTKHL
QDQLFQRDIPTVRDALAVPVTVAMLKGRANYLCHYYLQRTADNGRLPSRQDTAYLQDILRFAKITRSGDKAELASVPETS
PVWSMVTSTRDNCLGQECPHYKDCFVMQARREAQQADIVVVNHHLFFADIMLRDTGMAELLPSANTIIFDEAHQLPETAT
LFFGETLSTTQLLELARDAVAEGLAHARDAVEWVKLGGALERASRDVRLAFADDGIVRMSLAQLGDGHPLFGALDALDAA
LDALSTALAGQAERAESIAACQRRARELQDLLAGWVAPGAQDGAADAKPAAQTGEHGDPAEKVRWVEVFAHTVQLHETPL
SVAPIFAKQRAGVPRAWIFTSATLSVRGDFTHYAAQMGLSSRRSMTLPSPFDYQAQGLLYVPRNLPQPSSPAFTDAVFDA
ALPAIEASGGGVFVLCTTLRAVDRIAMKLRDTIDARGWSTPLLVQGDASRTELLDRFRAYGNAILVGSQSFWEGVDVRGD
ALSLVVIDKLPFAPPDDPVLAARLDALTKKGLSPFAVHQLPQAVITLKQGAGRLIRAETDRGVLMICDTRLVDKPYGRRI
WQSLPPFKRTREIDVVREFFAERREAEQA

Specific function: Unknown

COG id: COG1199

COG function: function code KL; Rad3-related DNA helicases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase ATP-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788110, Length=710, Percent_Identity=41.2676056338028, Blast_Score=489, Evalue=1e-139,
Organism=Escherichia coli, GI1787018, Length=241, Percent_Identity=36.9294605809129, Blast_Score=117, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR010614
- InterPro:   IPR014013
- InterPro:   IPR006555
- InterPro:   IPR006935 [H]

Pfam domain/function: PF06733 DEAD_2; PF04851 ResIII [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 81259; Mature: 81259

Theoretical pI: Translated: 6.06; Mature: 6.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSPLDAHPDARRDDPSAARSPTSGAATGAYTPSVKRIVELDAIFGEGGLFARALDNYRP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCC
RASQIDMARAVAAAMEASGKLMPEPEIFETRKRPARRMQDGAAAGRDDACAAPPGDESAD
CHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
SGDNTLIVEAGTGTGKTYAYLVPAMLWGGKVIVSTGTKHLQDQLFQRDIPTVRDALAVPV
CCCCEEEEECCCCCCCCHHHHHHHHHHCCEEEEECCHHHHHHHHHHCCCHHHHHHHHHHH
TVAMLKGRANYLCHYYLQRTADNGRLPSRQDTAYLQDILRFAKITRSGDKAELASVPETS
HHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCCCCC
PVWSMVTSTRDNCLGQECPHYKDCFVMQARREAQQADIVVVNHHLFFADIMLRDTGMAEL
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCEEEEECHHEEHHHHHHCCCHHHH
LPSANTIIFDEAHQLPETATLFFGETLSTTQLLELARDAVAEGLAHARDAVEWVKLGGAL
CCCCCEEEECCHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ERASRDVRLAFADDGIVRMSLAQLGDGHPLFGALDALDAALDALSTALAGQAERAESIAA
HHCCCCEEEEEECCCEEEHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
CQRRARELQDLLAGWVAPGAQDGAADAKPAAQTGEHGDPAEKVRWVEVFAHTVQLHETPL
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
SVAPIFAKQRAGVPRAWIFTSATLSVRGDFTHYAAQMGLSSRRSMTLPSPFDYQAQGLLY
CHHHHHHHHHCCCCEEEEEEEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEE
VPRNLPQPSSPAFTDAVFDAALPAIEASGGGVFVLCTTLRAVDRIAMKLRDTIDARGWST
CCCCCCCCCCCCHHHHHHHHHHCCEECCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCC
PLLVQGDASRTELLDRFRAYGNAILVGSQSFWEGVDVRGDALSLVVIDKLPFAPPDDPVL
CEEEECCCHHHHHHHHHHHCCCEEEEECHHHHCCCCCCCCEEEEEEEECCCCCCCCCCHH
AARLDALTKKGLSPFAVHQLPQAVITLKQGAGRLIRAETDRGVLMICDTRLVDKPYGRRI
HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCHHHCCCHHHHH
WQSLPPFKRTREIDVVREFFAERREAEQA
HHHCCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNSPLDAHPDARRDDPSAARSPTSGAATGAYTPSVKRIVELDAIFGEGGLFARALDNYRP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCC
RASQIDMARAVAAAMEASGKLMPEPEIFETRKRPARRMQDGAAAGRDDACAAPPGDESAD
CHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
SGDNTLIVEAGTGTGKTYAYLVPAMLWGGKVIVSTGTKHLQDQLFQRDIPTVRDALAVPV
CCCCEEEEECCCCCCCCHHHHHHHHHHCCEEEEECCHHHHHHHHHHCCCHHHHHHHHHHH
TVAMLKGRANYLCHYYLQRTADNGRLPSRQDTAYLQDILRFAKITRSGDKAELASVPETS
HHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCCCCC
PVWSMVTSTRDNCLGQECPHYKDCFVMQARREAQQADIVVVNHHLFFADIMLRDTGMAEL
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCEEEEECHHEEHHHHHHCCCHHHH
LPSANTIIFDEAHQLPETATLFFGETLSTTQLLELARDAVAEGLAHARDAVEWVKLGGAL
CCCCCEEEECCHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ERASRDVRLAFADDGIVRMSLAQLGDGHPLFGALDALDAALDALSTALAGQAERAESIAA
HHCCCCEEEEEECCCEEEHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
CQRRARELQDLLAGWVAPGAQDGAADAKPAAQTGEHGDPAEKVRWVEVFAHTVQLHETPL
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
SVAPIFAKQRAGVPRAWIFTSATLSVRGDFTHYAAQMGLSSRRSMTLPSPFDYQAQGLLY
CHHHHHHHHHCCCCEEEEEEEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEE
VPRNLPQPSSPAFTDAVFDAALPAIEASGGGVFVLCTTLRAVDRIAMKLRDTIDARGWST
CCCCCCCCCCCCHHHHHHHHHHCCEECCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCC
PLLVQGDASRTELLDRFRAYGNAILVGSQSFWEGVDVRGDALSLVVIDKLPFAPPDDPVL
CEEEECCCHHHHHHHHHHHCCCEEEEECHHHHCCCCCCCCEEEEEEEECCCCCCCCCCHH
AARLDALTKKGLSPFAVHQLPQAVITLKQGAGRLIRAETDRGVLMICDTRLVDKPYGRRI
HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCHHHCCCHHHHH
WQSLPPFKRTREIDVVREFFAERREAEQA
HHHCCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]