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The map label for this gene is hrpB [H]

Identifier: 126447740

GI number: 126447740

Start: 596570

End: 598003

Strand: Direct

Name: hrpB [H]

Synonym: BMA10247_A0645

Alternate gene names: 126447740

Gene position: 596570-598003 (Clockwise)

Preceding gene: 126445637

Following gene: 126446898

Centisome position: 25.36

GC content: 72.8

Gene sequence:

>1434_bases
ATGTTTTCGACACTCTATTTCGCCGCCGCCGCCGCGCTCGCCAATCCGTCGTCGAACGACGCCTACGCCGCGCGCGTGCT
CGACGGCCGCTTCGCCGAAGCGGTCGCGCTCGTCGCCGCGCGTTGCGACTCGCAGCCGGGCGATGCGGCCGCCGACGTGC
GCGACGTTCATGCGTACGCGGACATCCAGCTCGTGCTCGGGCGCTTCGAGGAAGCCGAGGACACGTTTCGCCGCGCGCAG
AAGCTGCTGCGCGAATCGCGCGACCAGACGCGCGTGATGACCTGCCGCAACGCGAGCTGGCAGGCGTTCTTCCAGAACCG
CTTCGGCGTGGCGCAGGCCGGGTTCCGGCGGATCGCCGACGATCGCGCGGCGAGCGCCGCGCAGAAGCTCGAGAGCCTCG
TCGGCACGTGTGTCGTCATGCACCATCTCGGCCGCGCCGAGGACGCGATGGCGACGCTCGACGTGCTCGACGCGGCCGCG
CGCGGCGACGCCGATGGGCGCTGGGTGCGGCTCGCGGCCGCGCTGCGCGCGGATCTGCTGCTGCAATACCAGATCGGCCG
CGCCGACGCGCTCGGCGATCACGTGTACTGGCGCTCGGCGCTCGCCGAGCTGCCGCCGGCGGCGTTCGCGGAAACGGGCG
CGCCGCACGCCGCTTGCGCGGCCGATGCGCCGCCGTTGCTGCGCATGCGCGTCGCCTACATGCGCGAGACGCGCGCGCTC
GCCGCGGGCGACCACGCGGCGCTGGGGCGAATCGACACGCACGTGAGCTGGTGCGCGAAGGCGGGCCTGGCCGACTATCA
GCGCAGCGTGCGCCTGGAGGTCGCGCTTGCCGCGCTCGCGGGCCAGGCGCCGAACGTCGCCGACGCGATGATCGCGCCGT
ACCGCGAGGCCGCGGGGCGTTGCGGCTCGCACGCGCGCTGGACGCTCGACTACCTGTACTGCGCGGCGAAGGTGCGCGAG
CAACAGGGGCGGATTCGCGAATCGTCGTCGCTGTACGCGCACTATGCGCTCGCGTCGGTGCGGCACGTGCGCTCCGACGG
CGCGGCGCTCGCGATCGCGCGCTGCGGCACGCAGGCGGCCGCGCCGAGCGACGACGTGAGCGCGAGGCTGCCCGGCAAGT
ACCGGCGCGCGTATCGCTATCTGATGGAGCGGCTCGACCAGCGCGAGCTGTCGGTGCGCGAGATCGCCGCGCACATCGAC
GTGACCGAGCGCGCGCTGCAGGCGGCGTTCAAGGCCTATCTCGGGCTGTCGCCGAGCGAGCTGATCCGCCGTCAGCGGAT
GGAGCGGATTCGCGGCGAGCTGCTGTCCGACGCGCCGCGCGCGGCGAGCGTGCTCGAGATCGCGAGCCGCTGGGGAATCC
AGCATCGGTCGACGCTCGTGAACGGCTATCGGCGCATGTTCGACGAGGCGCCTTCGCAGACGTTCGACCGATGA

Upstream 100 bases:

>100_bases
CATCCATGCGCTGCGCCCCGCGACGAGCGGCGGCGCCCGGCGCACGGGTCGAGCCTGAACCCATCATCGTATTCGAAACC
GCCTGCCGAGAGGAGCCGCC

Downstream 100 bases:

>100_bases
GCGGTGAAGCGCCGTCATTCGGTTTCGCGAAATCGTGCGGAACCGAAGGGGGGATGTGCGTGATGCGAGGGAATCGGGCG
ACATCGGCGCGCTCGGGCGG

Product: regulatory protein HrpB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 477; Mature: 477

Protein sequence:

>477_residues
MFSTLYFAAAAALANPSSNDAYAARVLDGRFAEAVALVAARCDSQPGDAAADVRDVHAYADIQLVLGRFEEAEDTFRRAQ
KLLRESRDQTRVMTCRNASWQAFFQNRFGVAQAGFRRIADDRAASAAQKLESLVGTCVVMHHLGRAEDAMATLDVLDAAA
RGDADGRWVRLAAALRADLLLQYQIGRADALGDHVYWRSALAELPPAAFAETGAPHAACAADAPPLLRMRVAYMRETRAL
AAGDHAALGRIDTHVSWCAKAGLADYQRSVRLEVALAALAGQAPNVADAMIAPYREAAGRCGSHARWTLDYLYCAAKVRE
QQGRIRESSSLYAHYALASVRHVRSDGAALAIARCGTQAAAPSDDVSARLPGKYRRAYRYLMERLDQRELSVREIAAHID
VTERALQAAFKAYLGLSPSELIRRQRMERIRGELLSDAPRAASVLEIASRWGIQHRSTLVNGYRRMFDEAPSQTFDR

Sequences:

>Translated_477_residues
MFSTLYFAAAAALANPSSNDAYAARVLDGRFAEAVALVAARCDSQPGDAAADVRDVHAYADIQLVLGRFEEAEDTFRRAQ
KLLRESRDQTRVMTCRNASWQAFFQNRFGVAQAGFRRIADDRAASAAQKLESLVGTCVVMHHLGRAEDAMATLDVLDAAA
RGDADGRWVRLAAALRADLLLQYQIGRADALGDHVYWRSALAELPPAAFAETGAPHAACAADAPPLLRMRVAYMRETRAL
AAGDHAALGRIDTHVSWCAKAGLADYQRSVRLEVALAALAGQAPNVADAMIAPYREAAGRCGSHARWTLDYLYCAAKVRE
QQGRIRESSSLYAHYALASVRHVRSDGAALAIARCGTQAAAPSDDVSARLPGKYRRAYRYLMERLDQRELSVREIAAHID
VTERALQAAFKAYLGLSPSELIRRQRMERIRGELLSDAPRAASVLEIASRWGIQHRSTLVNGYRRMFDEAPSQTFDR
>Mature_477_residues
MFSTLYFAAAAALANPSSNDAYAARVLDGRFAEAVALVAARCDSQPGDAAADVRDVHAYADIQLVLGRFEEAEDTFRRAQ
KLLRESRDQTRVMTCRNASWQAFFQNRFGVAQAGFRRIADDRAASAAQKLESLVGTCVVMHHLGRAEDAMATLDVLDAAA
RGDADGRWVRLAAALRADLLLQYQIGRADALGDHVYWRSALAELPPAAFAETGAPHAACAADAPPLLRMRVAYMRETRAL
AAGDHAALGRIDTHVSWCAKAGLADYQRSVRLEVALAALAGQAPNVADAMIAPYREAAGRCGSHARWTLDYLYCAAKVRE
QQGRIRESSSLYAHYALASVRHVRSDGAALAIARCGTQAAAPSDDVSARLPGKYRRAYRYLMERLDQRELSVREIAAHID
VTERALQAAFKAYLGLSPSELIRRQRMERIRGELLSDAPRAASVLEIASRWGIQHRSTLVNGYRRMFDEAPSQTFDR

Specific function: Positive regulation of hypersensitive response genes involved in plant pathogenicity and partly of its own synthesis in minimal medium [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788778, Length=131, Percent_Identity=30.5343511450382, Blast_Score=66, Evalue=5e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 52292; Mature: 52292

Theoretical pI: Translated: 8.84; Mature: 8.84

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSTLYFAAAAALANPSSNDAYAARVLDGRFAEAVALVAARCDSQPGDAAADVRDVHAYA
CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
DIQLVLGRFEEAEDTFRRAQKLLRESRDQTRVMTCRNASWQAFFQNRFGVAQAGFRRIAD
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHH
DRAASAAQKLESLVGTCVVMHHLGRAEDAMATLDVLDAAARGDADGRWVRLAAALRADLL
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
LQYQIGRADALGDHVYWRSALAELPPAAFAETGAPHAACAADAPPLLRMRVAYMRETRAL
HHEECCCCHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHCCCCCHHHHHHHHHHHHHHHH
AAGDHAALGRIDTHVSWCAKAGLADYQRSVRLEVALAALAGQAPNVADAMIAPYREAAGR
HCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
CGSHARWTLDYLYCAAKVREQQGRIRESSSLYAHYALASVRHVRSDGAALAIARCGTQAA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHCCCCCC
APSDDVSARLPGKYRRAYRYLMERLDQRELSVREIAAHIDVTERALQAAFKAYLGLSPSE
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
LIRRQRMERIRGELLSDAPRAASVLEIASRWGIQHRSTLVNGYRRMFDEAPSQTFDR
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MFSTLYFAAAAALANPSSNDAYAARVLDGRFAEAVALVAARCDSQPGDAAADVRDVHAYA
CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
DIQLVLGRFEEAEDTFRRAQKLLRESRDQTRVMTCRNASWQAFFQNRFGVAQAGFRRIAD
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHH
DRAASAAQKLESLVGTCVVMHHLGRAEDAMATLDVLDAAARGDADGRWVRLAAALRADLL
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
LQYQIGRADALGDHVYWRSALAELPPAAFAETGAPHAACAADAPPLLRMRVAYMRETRAL
HHEECCCCHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHCCCCCHHHHHHHHHHHHHHHH
AAGDHAALGRIDTHVSWCAKAGLADYQRSVRLEVALAALAGQAPNVADAMIAPYREAAGR
HCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
CGSHARWTLDYLYCAAKVREQQGRIRESSSLYAHYALASVRHVRSDGAALAIARCGTQAA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHCCCCCC
APSDDVSARLPGKYRRAYRYLMERLDQRELSVREIAAHIDVTERALQAAFKAYLGLSPSE
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
LIRRQRMERIRGELLSDAPRAASVLEIASRWGIQHRSTLVNGYRRMFDEAPSQTFDR
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1479894; 11823852 [H]