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The map label for this gene is cph2 [H]

Identifier: 126447734

GI number: 126447734

Start: 96826

End: 98289

Strand: Reverse

Name: cph2 [H]

Synonym: BMA10247_A0115

Alternate gene names: 126447734

Gene position: 98289-96826 (Counterclockwise)

Preceding gene: 126446929

Following gene: 126446494

Centisome position: 4.18

GC content: 68.44

Gene sequence:

>1464_bases
ATGTCGCCGACGGGCGTAATCGTTTGCGGCATGCTGCTGCTCACGCTGATCTGGCTGTTTTGCGCACGCGTGCTGTACCA
GTCGCACCGGGACGCATACCTGCATGCGGTCGACAACGCACACAATCTCGTGCTGCTGCTCGAACGCGACATCGCGCGCA
ACGTCGAGCTCTACGACCTGTCGCTGCAGGCGGTCGTCGACGGCGTGAACGATCCGCGCATCATGGCGCTCGATCCCGCG
ATACGCGCCAAGGTGCTGTTCGACCGCGCGGCCACCGGCAAGTACCTCGGCACGATCTCCGTGATGAACGAGCACGGCGA
CATCGTGCTCGACTCGCACTTCCCGCATCCGCCTGCCGTCGCGAACTTCTCGTATCGCGACTATTTCGTCTACCAGCGCG
ATCACCCGAAAGGCGGCCTCTACATCGGCGAGCCGTACGCGGCGCGGCTGCGCCACGGCGCGCCGACGATCGCGCTCAGC
CGGCGCATCACGCGCGCCGACGGCTCGTTCGGCGGCGTCGTCGTCGGCACGCTCGGCATCGACTACTTCCGCTCGCTGCT
CGACGGCCTTTCGGTGGGCCCGGACGGCACGGCGGCCGTCTTCGAGACCAACGGGCTGATGATCACGCGCCTGCCGTTCG
ATCCGAAGATGGTCGGACGCAGCATCGCCGACTCTGCCCTCTACGCGCACGTGCGCGAGCACGACGCGGGCGTGTTCACC
GGCGTCGCGTCGATCGATGGCGTGCGGCGGCTTTACATGTACAAGCGGCTGCAGGGGCTGCCGATCGTCGTCAACGTGTC
GCCCGCCGAGCGGCACGTCTTCATGCAGTGGCGCATTCGGGCGCAGCGGCTCGGCGTGCTGATGCTCGTGTTCGGCATCG
CGATCGTCGGCGGCACCGCGCTGCTCGCGCGCGAGTTGCGCTGGCGGCGGCACGCGGAGATGCGCCTGCAGCGCCTCGCC
CGCACCGATGCGCTGACGGGCCTCGGCAATCGGCGCGCGTTCGACGAGAACCTGCGCAGCGAATGGGCGCGCGCGCTGCG
CACCGGCCGCCCGCTGTCGCTGCTGTTCGTCGACATCGATCAGTTCAAGGACTACAACGACCACTACGGCCACCAGGCGG
GCGACGACGTGCTGCGCGAAGTCGGCGGCTGCCTCGCGGTGAACGTACGCCGCGCGGCCGACGACGTCGCGCGTTACGGC
GGCGAGGAGTTCGTGATCACGCTGCCGGACACCGACGCGAAAAGCGCGGCCGCGATCGCCGAGTACATCCGTCGCGCGGT
CTACGATCTCGACATCGAGCACGTGCGCAGCCCGTATGCGCGCGTGACCGTCAGCATCGGCCTCGTCACGTCGCACGAGC
ACATCGCGCACTCGGACGCGACGCTCGTGAAGATGGCCGATGCCGCGCTGTACCAGGCGAAATCGACCGGACGCAACCGC
GTCTGCGGCGCGCAGCACGCCTGA

Upstream 100 bases:

>100_bases
GGCGGCCTCGATCCGGCCGCCCGACAGGCTTTCCGACGTCATGCGCAAGCGTACGACCTCCTTTGCGACTCGTTTCCTGC
AGCCCTGGACGCAGAGCCTG

Downstream 100 bases:

>100_bases
GCCGGCGCGCGCCGCGGCAACCGCGCCCGGTGCGCGAGCCCGGTGGCCCGCGCCGGAAACCATGCCGGCAACCGCACCCG
AAAGGAACCAGGGCCGCGCG

Product: diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 487; Mature: 486

Protein sequence:

>487_residues
MSPTGVIVCGMLLLTLIWLFCARVLYQSHRDAYLHAVDNAHNLVLLLERDIARNVELYDLSLQAVVDGVNDPRIMALDPA
IRAKVLFDRAATGKYLGTISVMNEHGDIVLDSHFPHPPAVANFSYRDYFVYQRDHPKGGLYIGEPYAARLRHGAPTIALS
RRITRADGSFGGVVVGTLGIDYFRSLLDGLSVGPDGTAAVFETNGLMITRLPFDPKMVGRSIADSALYAHVREHDAGVFT
GVASIDGVRRLYMYKRLQGLPIVVNVSPAERHVFMQWRIRAQRLGVLMLVFGIAIVGGTALLARELRWRRHAEMRLQRLA
RTDALTGLGNRRAFDENLRSEWARALRTGRPLSLLFVDIDQFKDYNDHYGHQAGDDVLREVGGCLAVNVRRAADDVARYG
GEEFVITLPDTDAKSAAAIAEYIRRAVYDLDIEHVRSPYARVTVSIGLVTSHEHIAHSDATLVKMADAALYQAKSTGRNR
VCGAQHA

Sequences:

>Translated_487_residues
MSPTGVIVCGMLLLTLIWLFCARVLYQSHRDAYLHAVDNAHNLVLLLERDIARNVELYDLSLQAVVDGVNDPRIMALDPA
IRAKVLFDRAATGKYLGTISVMNEHGDIVLDSHFPHPPAVANFSYRDYFVYQRDHPKGGLYIGEPYAARLRHGAPTIALS
RRITRADGSFGGVVVGTLGIDYFRSLLDGLSVGPDGTAAVFETNGLMITRLPFDPKMVGRSIADSALYAHVREHDAGVFT
GVASIDGVRRLYMYKRLQGLPIVVNVSPAERHVFMQWRIRAQRLGVLMLVFGIAIVGGTALLARELRWRRHAEMRLQRLA
RTDALTGLGNRRAFDENLRSEWARALRTGRPLSLLFVDIDQFKDYNDHYGHQAGDDVLREVGGCLAVNVRRAADDVARYG
GEEFVITLPDTDAKSAAAIAEYIRRAVYDLDIEHVRSPYARVTVSIGLVTSHEHIAHSDATLVKMADAALYQAKSTGRNR
VCGAQHA
>Mature_486_residues
SPTGVIVCGMLLLTLIWLFCARVLYQSHRDAYLHAVDNAHNLVLLLERDIARNVELYDLSLQAVVDGVNDPRIMALDPAI
RAKVLFDRAATGKYLGTISVMNEHGDIVLDSHFPHPPAVANFSYRDYFVYQRDHPKGGLYIGEPYAARLRHGAPTIALSR
RITRADGSFGGVVVGTLGIDYFRSLLDGLSVGPDGTAAVFETNGLMITRLPFDPKMVGRSIADSALYAHVREHDAGVFTG
VASIDGVRRLYMYKRLQGLPIVVNVSPAERHVFMQWRIRAQRLGVLMLVFGIAIVGGTALLARELRWRRHAEMRLQRLAR
TDALTGLGNRRAFDENLRSEWARALRTGRPLSLLFVDIDQFKDYNDHYGHQAGDDVLREVGGCLAVNVRRAADDVARYGG
EEFVITLPDTDAKSAAAIAEYIRRAVYDLDIEHVRSPYARVTVSIGLVTSHEHIAHSDATLVKMADAALYQAKSTGRNRV
CGAQHA

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI145693134, Length=159, Percent_Identity=40.8805031446541, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI87081881, Length=194, Percent_Identity=39.6907216494845, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI1787262, Length=167, Percent_Identity=40.1197604790419, Blast_Score=105, Evalue=7e-24,
Organism=Escherichia coli, GI1786584, Length=225, Percent_Identity=30.6666666666667, Blast_Score=105, Evalue=8e-24,
Organism=Escherichia coli, GI87082007, Length=172, Percent_Identity=38.3720930232558, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI1788381, Length=185, Percent_Identity=36.7567567567568, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI1787541, Length=180, Percent_Identity=33.8888888888889, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1787802, Length=164, Percent_Identity=34.1463414634146, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1787816, Length=164, Percent_Identity=36.5853658536585, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI87081977, Length=203, Percent_Identity=32.512315270936, Blast_Score=79, Evalue=8e-16,
Organism=Escherichia coli, GI1788085, Length=189, Percent_Identity=31.2169312169312, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87081974, Length=159, Percent_Identity=28.9308176100629, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI1788956, Length=180, Percent_Identity=32.2222222222222, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 53965; Mature: 53833

Theoretical pI: Translated: 8.75; Mature: 8.75

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPTGVIVCGMLLLTLIWLFCARVLYQSHRDAYLHAVDNAHNLVLLLERDIARNVELYDL
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEECHHHCCCEEEEE
SLQAVVDGVNDPRIMALDPAIRAKVLFDRAATGKYLGTISVMNEHGDIVLDSHFPHPPAV
EHHHHHCCCCCCEEEEECHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEECCCCCCCCC
ANFSYRDYFVYQRDHPKGGLYIGEPYAARLRHGAPTIALSRRITRADGSFGGVVVGTLGI
CCCCCCEEEEEEECCCCCCEEECCCHHHHHHCCCCCCHHHHHHCCCCCCCCCEEEEHHHH
DYFRSLLDGLSVGPDGTAAVFETNGLMITRLPFDPKMVGRSIADSALYAHVREHDAGVFT
HHHHHHHHCCCCCCCCCEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCEE
GVASIDGVRRLYMYKRLQGLPIVVNVSPAERHVFMQWRIRAQRLGVLMLVFGIAIVGGTA
EHHHHHHHHHHHHHHHHCCCEEEEECCCCHHEEEEHEEHHHHHHHHHHHHHHHHHHHHHH
LLARELRWRRHAEMRLQRLARTDALTGLGNRRAFDENLRSEWARALRTGRPLSLLFVDID
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEHH
QFKDYNDHYGHQAGDDVLREVGGCLAVNVRRAADDVARYGGEEFVITLPDTDAKSAAAIA
HHCCCCHHCCCCCHHHHHHHHCCEEEEEHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH
EYIRRAVYDLDIEHVRSPYARVTVSIGLVTSHEHIAHSDATLVKMADAALYQAKSTGRNR
HHHHHHHHCCCHHHHCCCCEEEEEEEEEEECCCHHCCCCCHHHHHHHHHHHHHHCCCCCC
VCGAQHA
CCCCCCC
>Mature Secondary Structure 
SPTGVIVCGMLLLTLIWLFCARVLYQSHRDAYLHAVDNAHNLVLLLERDIARNVELYDL
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEECHHHCCCEEEEE
SLQAVVDGVNDPRIMALDPAIRAKVLFDRAATGKYLGTISVMNEHGDIVLDSHFPHPPAV
EHHHHHCCCCCCEEEEECHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEECCCCCCCCC
ANFSYRDYFVYQRDHPKGGLYIGEPYAARLRHGAPTIALSRRITRADGSFGGVVVGTLGI
CCCCCCEEEEEEECCCCCCEEECCCHHHHHHCCCCCCHHHHHHCCCCCCCCCEEEEHHHH
DYFRSLLDGLSVGPDGTAAVFETNGLMITRLPFDPKMVGRSIADSALYAHVREHDAGVFT
HHHHHHHHCCCCCCCCCEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCEE
GVASIDGVRRLYMYKRLQGLPIVVNVSPAERHVFMQWRIRAQRLGVLMLVFGIAIVGGTA
EHHHHHHHHHHHHHHHHCCCEEEEECCCCHHEEEEHEEHHHHHHHHHHHHHHHHHHHHHH
LLARELRWRRHAEMRLQRLARTDALTGLGNRRAFDENLRSEWARALRTGRPLSLLFVDID
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEHH
QFKDYNDHYGHQAGDDVLREVGGCLAVNVRRAADDVARYGGEEFVITLPDTDAKSAAAIA
HHCCCCHHCCCCCHHHHHHHHCCEEEEEHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH
EYIRRAVYDLDIEHVRSPYARVTVSIGLVTSHEHIAHSDATLVKMADAALYQAKSTGRNR
HHHHHHHHCCCHHHHCCCCEEEEEEEEEEECCCHHCCCCCHHHHHHHHHHHHHHCCCCCC
VCGAQHA
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]