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The map label for this gene is kdgR [H]

Identifier: 126447720

GI number: 126447720

Start: 361433

End: 362359

Strand: Reverse

Name: kdgR [H]

Synonym: BMA10247_A0411

Alternate gene names: 126447720

Gene position: 362359-361433 (Counterclockwise)

Preceding gene: 126446316

Following gene: 126445835

Centisome position: 15.4

GC content: 68.93

Gene sequence:

>927_bases
TTGACCTATGAATCAACCATCCATCGACGCAATCGGCGCAGCCGCGCAGCACGCGCCGCCGAGGCGTTCGATGCATCGCG
TCCCCGGACAACCGATCCACCGATGAAACCCAGGAAAGACGCGCCTGCCGGCGCCGCGCAAGCGCCGCACGATTGTGAGG
AAATCGAGCGCTATCGCGCGCCCGCGCTCGACAAGGGGCTCGATATCCTCGAGCTTCTCGCCGAGCAGAAGGAAGGCCTC
ACGCGCACCGAGATCACGAAGGAGCTCGGCCGCAACGCGAGCGAGATCTACCGGATGCTGGAGCGGCTCGTCGCGCGCCA
ATACGTGATCCGCTCGCCGGGAGGCGACCGCTACACGCTGAGCCTGAAGCTCTACTCGCTCGCCCACCGCCACCCGCCGC
TCAAGCGGCTGATCGCCGAAGCGCTGCCGCCGATGCAGCGCTTCGCCGATGCGGCCGAGCAGTCGTGCCACCTGTGCGTG
TACGACCGCGGCAACCTGCTCGTGATCGCGCAGGTCGACGGGCCGGGCGCATGGGGCATCTCGGTGCGGCTCGGCTCGCG
CGTCGGGCTCGTCGACACCGCGTCGGGCCCCGTGTTGCTTGCGTTCCAGACGCCCGAGCAGCGCGCCCGGATGCTCGTCG
AGCATACGAAGGTGGAAGGCGAAATCGCGCTCGACATGCGCGAGTTCGACGCGCTGCTGCACGAGATCCGCGCGACCGGC
CGGCTCCGGCAGAAGAGCCGCCAGGCATTCGGCGTGACCGACATCGCGTATCCGGTTCTCGGGCCGTCGGGCCATGCGAT
CGCCGCGCTCACGTGCCCGTACGTCCGCCGGATCGACACGCACGCCGCGCCGTGCGCCGAGGATGTCGACGCGCAACTGC
GCGCGACGGCCCGACATCTTTCGATGCTGAAAGAGGCGGCCGCGTGA

Upstream 100 bases:

>100_bases
ACCGCGAAGCAGACGGTCTCTTTTATTCAACAATTGTAGACAAAATTGTCATTGATTTCGCATTCGTTGATTATCATTGC
CCGTTGGAGCAGTTGCTTAA

Downstream 100 bases:

>100_bases
CGTTCGCGATCCGCCCGACGAAAATGTGAAATCATTCCGGCCTGTCCATGCGGATAACGGGCTGGCGAGCGCGCCGTGGC
GCCCGCCGCGCGGGCCGGGG

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 307

Protein sequence:

>308_residues
MTYESTIHRRNRRSRAARAAEAFDASRPRTTDPPMKPRKDAPAGAAQAPHDCEEIERYRAPALDKGLDILELLAEQKEGL
TRTEITKELGRNASEIYRMLERLVARQYVIRSPGGDRYTLSLKLYSLAHRHPPLKRLIAEALPPMQRFADAAEQSCHLCV
YDRGNLLVIAQVDGPGAWGISVRLGSRVGLVDTASGPVLLAFQTPEQRARMLVEHTKVEGEIALDMREFDALLHEIRATG
RLRQKSRQAFGVTDIAYPVLGPSGHAIAALTCPYVRRIDTHAAPCAEDVDAQLRATARHLSMLKEAAA

Sequences:

>Translated_308_residues
MTYESTIHRRNRRSRAARAAEAFDASRPRTTDPPMKPRKDAPAGAAQAPHDCEEIERYRAPALDKGLDILELLAEQKEGL
TRTEITKELGRNASEIYRMLERLVARQYVIRSPGGDRYTLSLKLYSLAHRHPPLKRLIAEALPPMQRFADAAEQSCHLCV
YDRGNLLVIAQVDGPGAWGISVRLGSRVGLVDTASGPVLLAFQTPEQRARMLVEHTKVEGEIALDMREFDALLHEIRATG
RLRQKSRQAFGVTDIAYPVLGPSGHAIAALTCPYVRRIDTHAAPCAEDVDAQLRATARHLSMLKEAAA
>Mature_307_residues
TYESTIHRRNRRSRAARAAEAFDASRPRTTDPPMKPRKDAPAGAAQAPHDCEEIERYRAPALDKGLDILELLAEQKEGLT
RTEITKELGRNASEIYRMLERLVARQYVIRSPGGDRYTLSLKLYSLAHRHPPLKRLIAEALPPMQRFADAAEQSCHLCVY
DRGNLLVIAQVDGPGAWGISVRLGSRVGLVDTASGPVLLAFQTPEQRARMLVEHTKVEGEIALDMREFDALLHEIRATGR
LRQKSRQAFGVTDIAYPVLGPSGHAIAALTCPYVRRIDTHAAPCAEDVDAQLRATARHLSMLKEAAA

Specific function: Transcriptional repressor of genes involved in pectinolysis and in pectinase secretion. Controls all the genes involved in pectin catabolism, including the pel genes encoding pectate lyases, kdgT which encodes the 2-keto-3-deoxygluconate transport system

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1788131, Length=212, Percent_Identity=26.8867924528302, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 34154; Mature: 34022

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYESTIHRRNRRSRAARAAEAFDASRPRTTDPPMKPRKDAPAGAAQAPHDCEEIERYRA
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC
PALDKGLDILELLAEQKEGLTRTEITKELGRNASEIYRMLERLVARQYVIRSPGGDRYTL
CCHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEE
SLKLYSLAHRHPPLKRLIAEALPPMQRFADAAEQSCHLCVYDRGNLLVIAQVDGPGAWGI
EEEEHHHHHCCCHHHHHHHHHCCHHHHHHHHHHCCCEEEEEECCCEEEEEEECCCCCEEE
SVRLGSRVGLVDTASGPVLLAFQTPEQRARMLVEHTKVEGEIALDMREFDALLHEIRATG
EEEECCCCCEEECCCCCEEEEECCHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHH
RLRQKSRQAFGVTDIAYPVLGPSGHAIAALTCPYVRRIDTHAAPCAEDVDAQLRATARHL
HHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCHHHHHHHCCCCCCHHHHHHHHHHHHHHH
SMLKEAAA
HHHHHHCC
>Mature Secondary Structure 
TYESTIHRRNRRSRAARAAEAFDASRPRTTDPPMKPRKDAPAGAAQAPHDCEEIERYRA
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC
PALDKGLDILELLAEQKEGLTRTEITKELGRNASEIYRMLERLVARQYVIRSPGGDRYTL
CCHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEE
SLKLYSLAHRHPPLKRLIAEALPPMQRFADAAEQSCHLCVYDRGNLLVIAQVDGPGAWGI
EEEEHHHHHCCCHHHHHHHHHCCHHHHHHHHHHCCCEEEEEECCCEEEEEEECCCCCEEE
SVRLGSRVGLVDTASGPVLLAFQTPEQRARMLVEHTKVEGEIALDMREFDALLHEIRATG
EEEECCCCCEEECCCCCEEEEECCHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHH
RLRQKSRQAFGVTDIAYPVLGPSGHAIAALTCPYVRRIDTHAAPCAEDVDAQLRATARHL
HHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCHHHHHHHCCCCCCHHHHHHHHHHHHHHH
SMLKEAAA
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1840643; 1545709 [H]