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The map label for this gene is aphA [H]

Identifier: 126447644

GI number: 126447644

Start: 1399820

End: 1402285

Strand: Reverse

Name: aphA [H]

Synonym: BMA10247_A1434

Alternate gene names: 126447644

Gene position: 1402285-1399820 (Counterclockwise)

Preceding gene: 126446567

Following gene: 126445658

Centisome position: 59.6

GC content: 68.45

Gene sequence:

>2466_bases
TTGCGGCCATGGTATCCGTCGCCTAATCTCCAGACATCATTTGTTCATCGCCGGCTCGCGCCAGGCGCGCCGATCGTGCC
TTCGGCGCGGTCGTCCGGGCTCGCGACGGCCGGCGTCGGCAAATGCCTGAACCGGACCGGAACGCGCCGCGTCCGCCCCG
CACGACGGCGCGCTTCGCGCACGACGCGCGAGCGCCCGGCGTGCGCGCCGGCGCGCGGCGAGCCGGGCGGCGGCCGCATC
CCGCGATCAAGCTTGCAAACGACTTTCTGGCAAAGACACCTCGGAGGGGGCGAGATGGCGTCGGGCATCGGGCGATTCGG
GAAAAGAGCGTCGCGCTTGATCGATTTCGGTTTGTGGGCCGCCGCCGCACTGTTACTGCTGACGGCGGGCGTCGGCGCGC
TCGGCACGGCCCGCCTGTCCGACAACGAGGCGGATATCCATCGCGCGAGCGAGGTGATATCGGGTCTCGAACGGCTGCTG
GCGCTGGCCCGCGACATGGAGACGAGCCAGCGCGGATATATCCTCACCGGCAAGACGGACTACCTTCAGCCTTACAAGGC
GGCACTGCCCGAAATCCGCAAGCAGTTCGACGCGCTCGCGACGCTCGTGCAGGGCGATGCCGTTCAGCAGCAGCGGCTCG
CGACGCTGCGCATGCTGCTCGAGAAAAAGCAGCACGAGCTCGCGGCGACGATCGAGCTGCGCAAGACGGAGGGGTTCGAC
GCGGCGCAGGCGATCGTCTCGAGCGATGCGGGCAAGATCTTCATGGACCGCGCGCGCGTGATGGTCAACGAAATGGAGGC
GACCGTCCAGCAGCAACTGAGGACGCTGCGCGATCGCGCCAGGGCGACACGCGACATCGCGATCGGCGTGGGGCTCGCGT
CCGGGCTGCTCACGCTCGCCGTGTGCGTATCGTTCGGCTATGTGATGCGCCGCCTGCTGCTCGTCGAGGCGGCCGCGGCC
CACGATCTGTTCGAGCAGCGCGAACTGCTGCACGTAACGCTCGCGAGCATCGGCGACGGCGTGATCGCGACGGACGTCGG
CGGCCGCATCACGTTCTTCAACCGGGTCGCCGAGGAGATGACGGCGCTTTGCGCCGATGCCGTCGTCGGTCAGCCGATCG
AGCGGGTGCTGATGTTCCGGCACGCGACGACGCAGCGGGTGATCGACAATCCGGCGCGCGTCGCGGTCGAGCGCAGGCGC
ACCGCGAGCTTGCCTGCCCATACGCGCTTCGTCGGCCGCAGCGGCGGGGAGCTGCCGGTGGACGGCAACGCCGCACCGAC
GTTCGACGCGAACGGCAAGCTCGTCGGCGCGGTGCTCATCGTGCGCGACGTGTCGGAGCGCGAGCGGGCCGAGGAGCGAT
TCCGGCTCGCCGTCGAGGCCGCGCCGACCGCGATGATCATGGTGGGGCGCGACGGCAGGATCGTGCTCGTCAATTCGCAG
GCCGAGAAATTGTTCGGGTACGCGCGCGGCGACATGATCGGGCACGGCATCGACATGCTGGTGCCCGAGCGTTTTCGTGC
GGGGCATTGGGCGCACCGCGACGCGTTCTTCGGCAACCCGGACGCGCGGCCGATGGGCGAGGGGCGGGACCTGTTCGGTT
TGCGCCGCGACGGCAGCGAGTTTCCGGTCGAGATCGGCCTGAATCCGATCACGACCTCGGAGGGCGCGTTCGTGCTGTGC
TCGATCGCCGACATCACCGCGCGCAAGCGCGCGGAACTCGAGCTGCGCCGCAGAAGCGAGGAGCTTGCGCGCTCGAATCA
GGATCTCGAGCAGTTCGCCTACGTCGCGTCTCACGATCTGCAGGAGCCGTTGCGCGCGGTCGCGGGGCCCCTGCAATTGC
TGCAGCGGCGATACCAGGGGCAGCTCGACGCGCGGGCCGACGAGTTCATCGGGCACGCGGTGGATGGCGCGACGAGAATG
CAGTCGCTGATCGACGACCTGCTCAGCTATTCGCGCGTCGGGCGGCTCGAGGACGCGCGCCGGCCGGTCGACTGCGAGCA
CGTGCTGGACGAGGCGCTGCGCAACCTGAGCGCGGCGATTCGCGAATCCGGCGCGCAGGTCACGCACGATCCGCTGCCGA
CCGTGCATGGCATCGAGGCACAGCTCGTGCTGCTGTTCCAGAATCTGATCGGCAACGCGATCAAGTTTCGCGGCAAGGAC
CGCGTCGCGCGGATTCATCTGGAAGCGCACACGCGCGACGACGCATGGCTGTTGCGCGTGCGCGACAACGGCATCGGGAT
CGATCCGCAGTATTTCGAGCGCATCTTCCTGATTTTCCAGCGGCTGCACACGCGGCGCGAATATCCGGGAACGGGGCTTG
GGCTCGCGCTGTGCAAGCGGATCGTCGAGCACCACGGCGGCCGCATCTTCGTCGAGTCCGAGCCGGGGCAGGGTACGACG
TTTTCGTTTACGCTGTCCAGGCCGGGTGCCGATGAAACGCGTTGGCCGCGCGATCCGAGGGAGTGA

Upstream 100 bases:

>100_bases
GCCGCGCGTTGCAGAGGTCTTCGCGCGCGCTGCGCCGATGCGAGGCGGCGGTTCGCCACCGTGACCGGTCCCGGCAATAC
CGCCTTCCGGCCGCCGAAGG

Downstream 100 bases:

>100_bases
GCGATGATTGCCGATGAGCGAGGAAATTTCGTCGAGATCCTGCTGGTCGAGGACAGCCCGACCGACGTGATGATGACCAA
GGAGGCGCTCGAATACTACA

Product: sensory box histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 821; Mature: 821

Protein sequence:

>821_residues
MRPWYPSPNLQTSFVHRRLAPGAPIVPSARSSGLATAGVGKCLNRTGTRRVRPARRRASRTTRERPACAPARGEPGGGRI
PRSSLQTTFWQRHLGGGEMASGIGRFGKRASRLIDFGLWAAAALLLLTAGVGALGTARLSDNEADIHRASEVISGLERLL
ALARDMETSQRGYILTGKTDYLQPYKAALPEIRKQFDALATLVQGDAVQQQRLATLRMLLEKKQHELAATIELRKTEGFD
AAQAIVSSDAGKIFMDRARVMVNEMEATVQQQLRTLRDRARATRDIAIGVGLASGLLTLAVCVSFGYVMRRLLLVEAAAA
HDLFEQRELLHVTLASIGDGVIATDVGGRITFFNRVAEEMTALCADAVVGQPIERVLMFRHATTQRVIDNPARVAVERRR
TASLPAHTRFVGRSGGELPVDGNAAPTFDANGKLVGAVLIVRDVSERERAEERFRLAVEAAPTAMIMVGRDGRIVLVNSQ
AEKLFGYARGDMIGHGIDMLVPERFRAGHWAHRDAFFGNPDARPMGEGRDLFGLRRDGSEFPVEIGLNPITTSEGAFVLC
SIADITARKRAELELRRRSEELARSNQDLEQFAYVASHDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDGATRM
QSLIDDLLSYSRVGRLEDARRPVDCEHVLDEALRNLSAAIRESGAQVTHDPLPTVHGIEAQLVLLFQNLIGNAIKFRGKD
RVARIHLEAHTRDDAWLLRVRDNGIGIDPQYFERIFLIFQRLHTRREYPGTGLGLALCKRIVEHHGGRIFVESEPGQGTT
FSFTLSRPGADETRWPRDPRE

Sequences:

>Translated_821_residues
MRPWYPSPNLQTSFVHRRLAPGAPIVPSARSSGLATAGVGKCLNRTGTRRVRPARRRASRTTRERPACAPARGEPGGGRI
PRSSLQTTFWQRHLGGGEMASGIGRFGKRASRLIDFGLWAAAALLLLTAGVGALGTARLSDNEADIHRASEVISGLERLL
ALARDMETSQRGYILTGKTDYLQPYKAALPEIRKQFDALATLVQGDAVQQQRLATLRMLLEKKQHELAATIELRKTEGFD
AAQAIVSSDAGKIFMDRARVMVNEMEATVQQQLRTLRDRARATRDIAIGVGLASGLLTLAVCVSFGYVMRRLLLVEAAAA
HDLFEQRELLHVTLASIGDGVIATDVGGRITFFNRVAEEMTALCADAVVGQPIERVLMFRHATTQRVIDNPARVAVERRR
TASLPAHTRFVGRSGGELPVDGNAAPTFDANGKLVGAVLIVRDVSERERAEERFRLAVEAAPTAMIMVGRDGRIVLVNSQ
AEKLFGYARGDMIGHGIDMLVPERFRAGHWAHRDAFFGNPDARPMGEGRDLFGLRRDGSEFPVEIGLNPITTSEGAFVLC
SIADITARKRAELELRRRSEELARSNQDLEQFAYVASHDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDGATRM
QSLIDDLLSYSRVGRLEDARRPVDCEHVLDEALRNLSAAIRESGAQVTHDPLPTVHGIEAQLVLLFQNLIGNAIKFRGKD
RVARIHLEAHTRDDAWLLRVRDNGIGIDPQYFERIFLIFQRLHTRREYPGTGLGLALCKRIVEHHGGRIFVESEPGQGTT
FSFTLSRPGADETRWPRDPRE
>Mature_821_residues
MRPWYPSPNLQTSFVHRRLAPGAPIVPSARSSGLATAGVGKCLNRTGTRRVRPARRRASRTTRERPACAPARGEPGGGRI
PRSSLQTTFWQRHLGGGEMASGIGRFGKRASRLIDFGLWAAAALLLLTAGVGALGTARLSDNEADIHRASEVISGLERLL
ALARDMETSQRGYILTGKTDYLQPYKAALPEIRKQFDALATLVQGDAVQQQRLATLRMLLEKKQHELAATIELRKTEGFD
AAQAIVSSDAGKIFMDRARVMVNEMEATVQQQLRTLRDRARATRDIAIGVGLASGLLTLAVCVSFGYVMRRLLLVEAAAA
HDLFEQRELLHVTLASIGDGVIATDVGGRITFFNRVAEEMTALCADAVVGQPIERVLMFRHATTQRVIDNPARVAVERRR
TASLPAHTRFVGRSGGELPVDGNAAPTFDANGKLVGAVLIVRDVSERERAEERFRLAVEAAPTAMIMVGRDGRIVLVNSQ
AEKLFGYARGDMIGHGIDMLVPERFRAGHWAHRDAFFGNPDARPMGEGRDLFGLRRDGSEFPVEIGLNPITTSEGAFVLC
SIADITARKRAELELRRRSEELARSNQDLEQFAYVASHDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDGATRM
QSLIDDLLSYSRVGRLEDARRPVDCEHVLDEALRNLSAAIRESGAQVTHDPLPTVHGIEAQLVLLFQNLIGNAIKFRGKD
RVARIHLEAHTRDDAWLLRVRDNGIGIDPQYFERIFLIFQRLHTRREYPGTGLGLALCKRIVEHHGGRIFVESEPGQGTT
FSFTLSRPGADETRWPRDPRE

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG0642

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI145693157, Length=260, Percent_Identity=28.8461538461538, Blast_Score=103, Evalue=5e-23,
Organism=Escherichia coli, GI48994928, Length=260, Percent_Identity=29.2307692307692, Blast_Score=94, Evalue=4e-20,
Organism=Escherichia coli, GI1786912, Length=242, Percent_Identity=32.6446280991736, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI1788549, Length=375, Percent_Identity=27.2, Blast_Score=89, Evalue=1e-18,
Organism=Escherichia coli, GI1789149, Length=251, Percent_Identity=28.6852589641434, Blast_Score=81, Evalue=3e-16,
Organism=Escherichia coli, GI1786600, Length=371, Percent_Identity=27.4932614555256, Blast_Score=80, Evalue=7e-16,
Organism=Escherichia coli, GI87081816, Length=241, Percent_Identity=26.5560165975104, Blast_Score=77, Evalue=6e-15,
Organism=Escherichia coli, GI1788393, Length=245, Percent_Identity=28.5714285714286, Blast_Score=74, Evalue=5e-14,
Organism=Escherichia coli, GI1788713, Length=261, Percent_Identity=23.7547892720307, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1788381, Length=127, Percent_Identity=30.7086614173228, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1790436, Length=242, Percent_Identity=28.5123966942149, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1790861, Length=224, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 90673; Mature: 90673

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPWYPSPNLQTSFVHRRLAPGAPIVPSARSSGLATAGVGKCLNRTGTRRVRPARRRASR
CCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHH
TTRERPACAPARGEPGGGRIPRSSLQTTFWQRHLGGGEMASGIGRFGKRASRLIDFGLWA
HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
AAALLLLTAGVGALGTARLSDNEADIHRASEVISGLERLLALARDMETSQRGYILTGKTD
HHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCH
YLQPYKAALPEIRKQFDALATLVQGDAVQQQRLATLRMLLEKKQHELAATIELRKTEGFD
HCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCH
AAQAIVSSDAGKIFMDRARVMVNEMEATVQQQLRTLRDRARATRDIAIGVGLASGLLTLA
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VCVSFGYVMRRLLLVEAAAAHDLFEQRELLHVTLASIGDGVIATDVGGRITFFNRVAEEM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHH
TALCADAVVGQPIERVLMFRHATTQRVIDNPARVAVERRRTASLPAHTRFVGRSGGELPV
HHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHCCCCCCCCC
DGNAAPTFDANGKLVGAVLIVRDVSERERAEERFRLAVEAAPTAMIMVGRDGRIVLVNSQ
CCCCCCCCCCCCCEEEEHEEHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEECCC
AEKLFGYARGDMIGHGIDMLVPERFRAGHWAHRDAFFGNPDARPMGEGRDLFGLRRDGSE
HHHHHHHHHCCHHHCCHHHHCCHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
FPVEIGLNPITTSEGAFVLCSIADITARKRAELELRRRSEELARSNQDLEQFAYVASHDL
CCEEECCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
QEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDGATRMQSLIDDLLSYSRVGRLEDAR
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCC
RPVDCEHVLDEALRNLSAAIRESGAQVTHDPLPTVHGIEAQLVLLFQNLIGNAIKFRGKD
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHEECCCC
RVARIHLEAHTRDDAWLLRVRDNGIGIDPQYFERIFLIFQRLHTRREYPGTGLGLALCKR
CEEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
IVEHHGGRIFVESEPGQGTTFSFTLSRPGADETRWPRDPRE
HHHHCCCEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRPWYPSPNLQTSFVHRRLAPGAPIVPSARSSGLATAGVGKCLNRTGTRRVRPARRRASR
CCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHH
TTRERPACAPARGEPGGGRIPRSSLQTTFWQRHLGGGEMASGIGRFGKRASRLIDFGLWA
HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
AAALLLLTAGVGALGTARLSDNEADIHRASEVISGLERLLALARDMETSQRGYILTGKTD
HHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCH
YLQPYKAALPEIRKQFDALATLVQGDAVQQQRLATLRMLLEKKQHELAATIELRKTEGFD
HCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCH
AAQAIVSSDAGKIFMDRARVMVNEMEATVQQQLRTLRDRARATRDIAIGVGLASGLLTLA
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VCVSFGYVMRRLLLVEAAAAHDLFEQRELLHVTLASIGDGVIATDVGGRITFFNRVAEEM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHH
TALCADAVVGQPIERVLMFRHATTQRVIDNPARVAVERRRTASLPAHTRFVGRSGGELPV
HHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHCCCCCCCCC
DGNAAPTFDANGKLVGAVLIVRDVSERERAEERFRLAVEAAPTAMIMVGRDGRIVLVNSQ
CCCCCCCCCCCCCEEEEHEEHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEECCC
AEKLFGYARGDMIGHGIDMLVPERFRAGHWAHRDAFFGNPDARPMGEGRDLFGLRRDGSE
HHHHHHHHHCCHHHCCHHHHCCHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
FPVEIGLNPITTSEGAFVLCSIADITARKRAELELRRRSEELARSNQDLEQFAYVASHDL
CCEEECCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
QEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDGATRMQSLIDDLLSYSRVGRLEDAR
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCC
RPVDCEHVLDEALRNLSAAIRESGAQVTHDPLPTVHGIEAQLVLLFQNLIGNAIKFRGKD
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHEECCCC
RVARIHLEAHTRDDAWLLRVRDNGIGIDPQYFERIFLIFQRLHTRREYPGTGLGLALCKR
CEEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
IVEHHGGRIFVESEPGQGTTFSFTLSRPGADETRWPRDPRE
HHHHCCCEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]