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The map label for this gene is ygeR [C]

Identifier: 126447188

GI number: 126447188

Start: 420686

End: 421438

Strand: Direct

Name: ygeR [C]

Synonym: BMA10247_A0472

Alternate gene names: 126447188

Gene position: 420686-421438 (Clockwise)

Preceding gene: 126447714

Following gene: 126447017

Centisome position: 17.88

GC content: 72.38

Gene sequence:

>753_bases
TTGAGAAGCATTCTGTTCGTCCAACGCGCGGGCATCGGCCGGACGGTGCGCGCGGCGCTCGTCGCGGCAGGCGCCGCGCT
CGTCGGCGGTTGCACGGTGACGCCGTGGACCGACTCCTGGCAGCCGACGCACGTGCCGTCGCAGCCGGCGCCGCGCGCGT
CGTCCGGCGTGCCGGCCGGCTATTACCGCGTGAATTCGGGCGATACGCTGGCGAGCATCGCGTCCGCGTTCGGCCAGCGC
ACGCTCGATATCGCGAGTTGGAACCACATGGCGCCAACCGACATGGTGATGCCCGGCCAAGTGCTGCGCGTCGCGCCGCC
GCCGAGCACGGCGACGTTCGCGCCGCCGCCTGCCGCCGAGCCGCAGCCGGAGGCGGCCGCCTCGGCGCTCGCGTGGCCCG
CGCACGGCACCGTGACGACGCCGTTCGGCGCCGGCAGGAATCATGGGATCGTGATCACGTCGACGGGCGGCGACCGCACG
GTGCGCGCCGCCGCGCCCGGCCGCGTCGTCTACGCGGGCACGGGCGTCGCCGCATATGGCCCGCTCGTGATCCTGAAACA
CGAGAACGGCCTCATCACCGCGTACGGCCACAACGAGAAACTGCTCGTCAACGAAGGCGATGCGGTGAGCGCGGGGCAGC
CGGTTGCCGAGATGGCCACCGACGCGAGCGGCCGCTCGACCTTCGAATTCGAGGTGCGGCGTAACGGCAAGGCCGTCGAT
CCGCTCGGCCTGCTGCCGCGCAACGGTTCCTGA

Upstream 100 bases:

>100_bases
ATCGGTGCGCCGCGGCCCGACGTTGTCGGGCCGATCGCGCACGAAAGTCCCGGCGGCGGTGAGCATGCCGCCGCCGCGCA
GTGAATTGATGGAGGTACGC

Downstream 100 bases:

>100_bases
GCGGCGTTCCGCGCCGCCTGTCTCGCCCGATGCGCGGCTGCGCAGCGCGCTCGCCGCGACACACTACGCCATGCCACGTC
ATGCCGCGGTGCCGAGCCGT

Product: putative lipoprotein NlpD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MRSILFVQRAGIGRTVRAALVAAGAALVGGCTVTPWTDSWQPTHVPSQPAPRASSGVPAGYYRVNSGDTLASIASAFGQR
TLDIASWNHMAPTDMVMPGQVLRVAPPPSTATFAPPPAAEPQPEAAASALAWPAHGTVTTPFGAGRNHGIVITSTGGDRT
VRAAAPGRVVYAGTGVAAYGPLVILKHENGLITAYGHNEKLLVNEGDAVSAGQPVAEMATDASGRSTFEFEVRRNGKAVD
PLGLLPRNGS

Sequences:

>Translated_250_residues
MRSILFVQRAGIGRTVRAALVAAGAALVGGCTVTPWTDSWQPTHVPSQPAPRASSGVPAGYYRVNSGDTLASIASAFGQR
TLDIASWNHMAPTDMVMPGQVLRVAPPPSTATFAPPPAAEPQPEAAASALAWPAHGTVTTPFGAGRNHGIVITSTGGDRT
VRAAAPGRVVYAGTGVAAYGPLVILKHENGLITAYGHNEKLLVNEGDAVSAGQPVAEMATDASGRSTFEFEVRRNGKAVD
PLGLLPRNGS
>Mature_250_residues
MRSILFVQRAGIGRTVRAALVAAGAALVGGCTVTPWTDSWQPTHVPSQPAPRASSGVPAGYYRVNSGDTLASIASAFGQR
TLDIASWNHMAPTDMVMPGQVLRVAPPPSTATFAPPPAAEPQPEAAASALAWPAHGTVTTPFGAGRNHGIVITSTGGDRT
VRAAAPGRVVYAGTGVAAYGPLVILKHENGLITAYGHNEKLLVNEGDAVSAGQPVAEMATDASGRSTFEFEVRRNGKAVD
PLGLLPRNGS

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87082174, Length=207, Percent_Identity=32.8502415458937, Blast_Score=107, Evalue=9e-25,
Organism=Escherichia coli, GI1789099, Length=118, Percent_Identity=43.2203389830509, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI87082297, Length=116, Percent_Identity=37.0689655172414, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 25663; Mature: 25663

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00626 RCC1_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSILFVQRAGIGRTVRAALVAAGAALVGGCTVTPWTDSWQPTHVPSQPAPRASSGVPAG
CCCEEEEEECCCCHHHHHHHHHHCHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCC
YYRVNSGDTLASIASAFGQRTLDIASWNHMAPTDMVMPGQVLRVAPPPSTATFAPPPAAE
EEEECCCCHHHHHHHHHCCCEEEEECCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCC
PQPEAAASALAWPAHGTVTTPFGAGRNHGIVITSTGGDRTVRAAAPGRVVYAGTGVAAYG
CCCHHHHHHEECCCCCCEECCCCCCCCCCEEEEECCCCEEEEECCCCCEEEECCCCCCCC
PLVILKHENGLITAYGHNEKLLVNEGDAVSAGQPVAEMATDASGRSTFEFEVRRNGKAVD
CEEEEEECCCEEEEECCCCEEEEECCCCCCCCCCHHHHHCCCCCCEEEEEEEECCCCCCC
PLGLLPRNGS
CCCCCCCCCC
>Mature Secondary Structure
MRSILFVQRAGIGRTVRAALVAAGAALVGGCTVTPWTDSWQPTHVPSQPAPRASSGVPAG
CCCEEEEEECCCCHHHHHHHHHHCHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCC
YYRVNSGDTLASIASAFGQRTLDIASWNHMAPTDMVMPGQVLRVAPPPSTATFAPPPAAE
EEEECCCCHHHHHHHHHCCCEEEEECCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCC
PQPEAAASALAWPAHGTVTTPFGAGRNHGIVITSTGGDRTVRAAAPGRVVYAGTGVAAYG
CCCHHHHHHEECCCCCCEECCCCCCCCCCEEEEECCCCEEEEECCCCCEEEECCCCCCCC
PLVILKHENGLITAYGHNEKLLVNEGDAVSAGQPVAEMATDASGRSTFEFEVRRNGKAVD
CEEEEEECCCEEEEECCCCEEEEECCCCCCCCCCHHHHHCCCCCCEEEEEEEECCCCCCC
PLGLLPRNGS
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]