| Definition | Burkholderia mallei NCTC 10247 chromosome II, complete genome. |
|---|---|
| Accession | NC_009079 |
| Length | 2,352,693 |
Click here to switch to the map view.
The map label for this gene is 126447184
Identifier: 126447184
GI number: 126447184
Start: 541036
End: 543456
Strand: Reverse
Name: 126447184
Synonym: BMA10247_A0596
Alternate gene names: NA
Gene position: 543456-541036 (Counterclockwise)
Preceding gene: 126445720
Following gene: 126446779
Centisome position: 23.1
GC content: 66.83
Gene sequence:
>2421_bases ATGCATTTCTTTCGATTCGCGTGGCGGCACGGCCGATATTGGCTTTGCCTGCTGATTGCGAGCGTATTGCTGCCGCAAGG CGCGGCGGCGGCCGTCACGGCGTCCTACACGGACATCGTCGGCGCGGACAGCGGGCTGTGCGTCTCGACGGCCGGCAACT CAAGCGCATCGGGCGCGGGCGTCGTGCAGACCTCGTGCGCGGGCCTGAGCAACACGACATGGTCGTTCGTTCCCGTCGGC AACCGCTATCACATCGTGCTGCAAGGCAGCGGCCTGTGCCTGAACGTGCCCGGGGGCTCGCTGAACAGCGGCACGCAATT GATCCAGTACGCATGCCAGGGCAACGGCCAGACCAATGACCAATGGACGGTCGTCGCGGTCGGCTCGAGCTACCGGATCG TGTCCGCGTCGAGCGGCATGTGCGTGAACGTGAGCGGCGCATCGCACGCGAGCGGCGCGGCGCTGATCCAGTATCCGTGC CAGGGCGCGAGCGCGCTCAACGATCAATTCAATCTGTATCTGCCCGTCGTCGCGGCCACCAACGTCACGGCGGCGAACAG CAACCTCTGCGTGAGCGTCAATGGCGGATCGACGGCCGCCGGCGCATCGATCGTCCAGGGAACATGCTCGAATCAGGGCG CCACGGGCTGGTCGCTGCTGCCCGCCGGCAGCGGCTATCACGTCGTCTCGCAAGGCACCGGGCAATGCCTGAACGTATAT GGCGGATACACGACGAGCGGCGCGCCGATCATCCAGTATCCGTGTCAGGGCGACGCGCAGACGAACGATCAATGGACGCT CGTGCCCGTCGGCTCGAAGTACCGGCTGATTTCGGTGTCGAGCGGCATGTGCCTGAACGTGAGCGGCGGCTCGCTGTCGC CGGGCGCGCCGCTGATCCAGTACCCGTGCCAGGGCGCGAACGCGCTCAACGACCAGTTCTCGCTCAGCCTGCCGCAGACT TTCCCGGTCACGCTGCCGTCCGCATGGAGCCCCGTGATTCCGCTGCCCGTCAATCCGATCGGCATCGCGAACGCGCCGAA CGGCAAGCTCGTGATGTGGTCCGCTGATCAGCAATTGAGCTTCCAGAACGACGTCGGCAGCAAGGCGACGCAGACGCAGA CCGCGGTGTTCGACCCGGCGACGAACACCGCGACGCAGTATCTCGAAACCTCGGCGGGCTCGGACATGTTCTGCACCGGC ACCGCGATGCTGCCCGACGGCCGCCTGCTCGTGAACGGCGGCGACAGCAGCCCGAAGACGACGCTGTACGACTGGACGAC CAATACGTGGAGCGCCGCGGCGACGATGAACATTGCGCGCGGCTATCAGGGCGACACGCTGCTGTCGAACGGCTCGGTGC TCACGCTCGGCGGCTCGTGGAGCGGCGGTCAGGGCGGCAAGACCGCCGAAGTGTGGACGAACGGCGGCGCGTGGACGCTG CTGCCCGGCGTGCCCGAGACGAACATCGTCGGCCCCGATCCGCAGGGCATCTATCGCGGCGACAATCATCTGTGGCTGTT CGCGCAAGGCAACGGCACGGTTTTCCATGCGGGGCCGAGCTCGCAGATGAACTGGATCTCGACGGCGGGCGGCGGCTCGA TCCAGTCGGCGGGCATGCGCGGCGTCGATCCGTTCAGCATCAACGGCACCGCGTCGCTATACGACGTCGGCAAGATCCTG AAGGCGGGCGGCGCGAAATCGTACCAGCAGAACGGCAGCGTCACGACCTATGCGTCGAACTCGGTGTACCAGATCGACAT CACGCGCGGGCCGAACCAGCCGGCATCGGTGCAGCGCCTGAACGGCATGACGTACCAGCGCGCGTTCGCCAACAGCGTGA TCCTGCCGAACGGCAGCATCGTGATGATCGGCGGCCAGAGCGTGCCGATGCCGTTCACCGACACGACCGCGATCATGGTC CCCGAAATCTGGGATCCGGCGACGCAACGCTTCAACCTGCTCAAGCCGATGCAGACGCCGCGCACCTATCACAGCACGGC GATCCTGATGGCGGACGGCCGCGTGTTCGCGGGCGGCGGCGGCCAGTGCGGCACCGGCTGCGCAATGAACCATCTGAACG CGGAGATCCTCACGCCGCCTTACCTGCTCAACGCGGACGGCACGCCGGCGCCGCGGCCGGTGATCACGAACGCGCCGGCC ACGGCGAAGCTCGGCGCGACGATCGCCGTGTCGACGCAAGGCCCCGTCGCGTCGTTCGTGCTGATGCGCCTGTCGTCCGT CACGCATACGACGAACAACGATCAGCGGCGCATTCCGCTCGCGATCGCGTCGTCCGGCGGCACGAGCTACCAGCTCGCGA TTCCCGCCGATCCCGGCGTGGTCCTGCCCGGCTACTACATGCTGTTCGCGCTCAACGCGCAAGGCGTGCCGAGCGTGTCG GCATCGATCCGGATCTCATGA
Upstream 100 bases:
>100_bases GCCGACCGTCGTCCGGTTCGTCATTCGGTCATGCGCCGAACAGTCGAATCGGATTCGGCCACTTTTAATACGGCGCGGGA AAACAGACGATGAGGCGTAT
Downstream 100 bases:
>100_bases CGATGCCCGGCGAACCGAACGCGCGCCGCGCCTCGTTGACGGGACTCGCGCTGAAGCTCGCGTTTGGGTTTGGGTTTGCG TTTGCGCTCGCGTGGCCGGG
Product: ricin-type beta-trefoil lectin domain/galactose oxidase domain-containing protein
Products: NA
Alternate protein names: Galactose Oxidase; Ricin B Lectin; Kelch Domain Protein; Arabinogalactan Endo-1 4-Beta-Galactosidase; Beta-Xylosidase; Pectinesterase; Kelch Repeat-Containing Protein; Ricin-Type Beta-Trefoil Lectin Domain Protein; Pectate Lyase; Pectate Lyase-Like Protein; Alpha-Glucosidase-Like Protein; Cellulase Cel5K; Exported Protein With Lectin-Like C-Terminus; Exported Oxidase; Lectin Repeat-Containing Protein; Glycosyl Hydrolase; Kelch Domain-Containing Protein; Subtilisin-Like Serine Protease
Number of amino acids: Translated: 806; Mature: 806
Protein sequence:
>806_residues MHFFRFAWRHGRYWLCLLIASVLLPQGAAAAVTASYTDIVGADSGLCVSTAGNSSASGAGVVQTSCAGLSNTTWSFVPVG NRYHIVLQGSGLCLNVPGGSLNSGTQLIQYACQGNGQTNDQWTVVAVGSSYRIVSASSGMCVNVSGASHASGAALIQYPC QGASALNDQFNLYLPVVAATNVTAANSNLCVSVNGGSTAAGASIVQGTCSNQGATGWSLLPAGSGYHVVSQGTGQCLNVY GGYTTSGAPIIQYPCQGDAQTNDQWTLVPVGSKYRLISVSSGMCLNVSGGSLSPGAPLIQYPCQGANALNDQFSLSLPQT FPVTLPSAWSPVIPLPVNPIGIANAPNGKLVMWSADQQLSFQNDVGSKATQTQTAVFDPATNTATQYLETSAGSDMFCTG TAMLPDGRLLVNGGDSSPKTTLYDWTTNTWSAAATMNIARGYQGDTLLSNGSVLTLGGSWSGGQGGKTAEVWTNGGAWTL LPGVPETNIVGPDPQGIYRGDNHLWLFAQGNGTVFHAGPSSQMNWISTAGGGSIQSAGMRGVDPFSINGTASLYDVGKIL KAGGAKSYQQNGSVTTYASNSVYQIDITRGPNQPASVQRLNGMTYQRAFANSVILPNGSIVMIGGQSVPMPFTDTTAIMV PEIWDPATQRFNLLKPMQTPRTYHSTAILMADGRVFAGGGGQCGTGCAMNHLNAEILTPPYLLNADGTPAPRPVITNAPA TAKLGATIAVSTQGPVASFVLMRLSSVTHTTNNDQRRIPLAIASSGGTSYQLAIPADPGVVLPGYYMLFALNAQGVPSVS ASIRIS
Sequences:
>Translated_806_residues MHFFRFAWRHGRYWLCLLIASVLLPQGAAAAVTASYTDIVGADSGLCVSTAGNSSASGAGVVQTSCAGLSNTTWSFVPVG NRYHIVLQGSGLCLNVPGGSLNSGTQLIQYACQGNGQTNDQWTVVAVGSSYRIVSASSGMCVNVSGASHASGAALIQYPC QGASALNDQFNLYLPVVAATNVTAANSNLCVSVNGGSTAAGASIVQGTCSNQGATGWSLLPAGSGYHVVSQGTGQCLNVY GGYTTSGAPIIQYPCQGDAQTNDQWTLVPVGSKYRLISVSSGMCLNVSGGSLSPGAPLIQYPCQGANALNDQFSLSLPQT FPVTLPSAWSPVIPLPVNPIGIANAPNGKLVMWSADQQLSFQNDVGSKATQTQTAVFDPATNTATQYLETSAGSDMFCTG TAMLPDGRLLVNGGDSSPKTTLYDWTTNTWSAAATMNIARGYQGDTLLSNGSVLTLGGSWSGGQGGKTAEVWTNGGAWTL LPGVPETNIVGPDPQGIYRGDNHLWLFAQGNGTVFHAGPSSQMNWISTAGGGSIQSAGMRGVDPFSINGTASLYDVGKIL KAGGAKSYQQNGSVTTYASNSVYQIDITRGPNQPASVQRLNGMTYQRAFANSVILPNGSIVMIGGQSVPMPFTDTTAIMV PEIWDPATQRFNLLKPMQTPRTYHSTAILMADGRVFAGGGGQCGTGCAMNHLNAEILTPPYLLNADGTPAPRPVITNAPA TAKLGATIAVSTQGPVASFVLMRLSSVTHTTNNDQRRIPLAIASSGGTSYQLAIPADPGVVLPGYYMLFALNAQGVPSVS ASIRIS >Mature_806_residues MHFFRFAWRHGRYWLCLLIASVLLPQGAAAAVTASYTDIVGADSGLCVSTAGNSSASGAGVVQTSCAGLSNTTWSFVPVG NRYHIVLQGSGLCLNVPGGSLNSGTQLIQYACQGNGQTNDQWTVVAVGSSYRIVSASSGMCVNVSGASHASGAALIQYPC QGASALNDQFNLYLPVVAATNVTAANSNLCVSVNGGSTAAGASIVQGTCSNQGATGWSLLPAGSGYHVVSQGTGQCLNVY GGYTTSGAPIIQYPCQGDAQTNDQWTLVPVGSKYRLISVSSGMCLNVSGGSLSPGAPLIQYPCQGANALNDQFSLSLPQT FPVTLPSAWSPVIPLPVNPIGIANAPNGKLVMWSADQQLSFQNDVGSKATQTQTAVFDPATNTATQYLETSAGSDMFCTG TAMLPDGRLLVNGGDSSPKTTLYDWTTNTWSAAATMNIARGYQGDTLLSNGSVLTLGGSWSGGQGGKTAEVWTNGGAWTL LPGVPETNIVGPDPQGIYRGDNHLWLFAQGNGTVFHAGPSSQMNWISTAGGGSIQSAGMRGVDPFSINGTASLYDVGKIL KAGGAKSYQQNGSVTTYASNSVYQIDITRGPNQPASVQRLNGMTYQRAFANSVILPNGSIVMIGGQSVPMPFTDTTAIMV PEIWDPATQRFNLLKPMQTPRTYHSTAILMADGRVFAGGGGQCGTGCAMNHLNAEILTPPYLLNADGTPAPRPVITNAPA TAKLGATIAVSTQGPVASFVLMRLSSVTHTTNNDQRRIPLAIASSGGTSYQLAIPADPGVVLPGYYMLFALNAQGVPSVS ASIRIS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 83217; Mature: 83217
Theoretical pI: Translated: 7.37; Mature: 7.37
Prosite motif: PS50231 RICIN_B_LECTIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHFFRFAWRHGRYWLCLLIASVLLPQGAAAAVTASYTDIVGADSGLCVSTAGNSSASGAG CCCEEEEEECCCEEHHHHHHHHHCCCCCCEEEEECCHHEECCCCCEEEEECCCCCCCCCC VVQTSCAGLSNTTWSFVPVGNRYHIVLQGSGLCLNVPGGSLNSGTQLIQYACQGNGQTND EEEEECCCCCCCCEEEEECCCEEEEEEECCCEEEECCCCCCCCCHHHHHHEECCCCCCCC QWTVVAVGSSYRIVSASSGMCVNVSGASHASGAALIQYPCQGASALNDQFNLYLPVVAAT CEEEEEECCCEEEEECCCCCEEEECCCCCCCCCEEEEECCCCCCCCCCCEEEEEEEEEEC NVTAANSNLCVSVNGGSTAAGASIVQGTCSNQGATGWSLLPAGSGYHVVSQGTGQCLNVY EEEECCCCEEEEECCCCCCCCCCEEECCCCCCCCCCEEEEECCCCEEEEECCCCCEEEEC GGYTTSGAPIIQYPCQGDAQTNDQWTLVPVGSKYRLISVSSGMCLNVSGGSLSPGAPLIQ CCEECCCCCEEEECCCCCCCCCCCEEEEECCCCEEEEEECCCCEEEECCCCCCCCCCEEE YPCQGANALNDQFSLSLPQTFPVTLPSAWSPVIPLPVNPIGIANAPNGKLVMWSADQQLS CCCCCCCCCCCCEEEECCCCCCEECCCCCCCEECCCCCCCEECCCCCCCEEEEECCCCCE FQNDVGSKATQTQTAVFDPATNTATQYLETSAGSDMFCTGTAMLPDGRLLVNGGDSSPKT ECCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCEEEEEEEECCCCEEEEECCCCCCCE TLYDWTTNTWSAAATMNIARGYQGDTLLSNGSVLTLGGSWSGGQGGKTAEVWTNGGAWTL EEEEECCCCCCEEEEEEECCCCCCCEEECCCCEEEECCCCCCCCCCCEEEEEECCCCEEE LPGVPETNIVGPDPQGIYRGDNHLWLFAQGNGTVFHAGPSSQMNWISTAGGGSIQSAGMR ECCCCCCCEECCCCCCEEECCCEEEEEECCCCEEEECCCCCCCCEEEECCCCCCCCCCCC GVDPFSINGTASLYDVGKILKAGGAKSYQQNGSVTTYASNSVYQIDITRGPNQPASVQRL CCCCEECCCCCHHHHHHHHHHCCCCCCHHCCCCEEEEECCCEEEEEEECCCCCCCHHHHH NGMTYQRAFANSVILPNGSIVMIGGQSVPMPFTDTTAIMVPEIWDPATQRFNLLKPMQTP CCCEEEHHHHCCEEECCCCEEEECCCCCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCC RTYHSTAILMADGRVFAGGGGQCGTGCAMNHLNAEILTPPYLLNADGTPAPRPVITNAPA CCCCCEEEEEECCEEEECCCCCCCCCHHHHCCCCEEECCCEEECCCCCCCCCCEEECCCC TAKLGATIAVSTQGPVASFVLMRLSSVTHTTNNDQRRIPLAIASSGGTSYQLAIPADPGV CEECCEEEEEECCCCHHHHHHHHHHHHEECCCCCCEEEEEEEECCCCCEEEEEECCCCCE VLPGYYMLFALNAQGVPSVSASIRIS ECCCEEEEEEECCCCCCCCCEEEEEC >Mature Secondary Structure MHFFRFAWRHGRYWLCLLIASVLLPQGAAAAVTASYTDIVGADSGLCVSTAGNSSASGAG CCCEEEEEECCCEEHHHHHHHHHCCCCCCEEEEECCHHEECCCCCEEEEECCCCCCCCCC VVQTSCAGLSNTTWSFVPVGNRYHIVLQGSGLCLNVPGGSLNSGTQLIQYACQGNGQTND EEEEECCCCCCCCEEEEECCCEEEEEEECCCEEEECCCCCCCCCHHHHHHEECCCCCCCC QWTVVAVGSSYRIVSASSGMCVNVSGASHASGAALIQYPCQGASALNDQFNLYLPVVAAT CEEEEEECCCEEEEECCCCCEEEECCCCCCCCCEEEEECCCCCCCCCCCEEEEEEEEEEC NVTAANSNLCVSVNGGSTAAGASIVQGTCSNQGATGWSLLPAGSGYHVVSQGTGQCLNVY EEEECCCCEEEEECCCCCCCCCCEEECCCCCCCCCCEEEEECCCCEEEEECCCCCEEEEC GGYTTSGAPIIQYPCQGDAQTNDQWTLVPVGSKYRLISVSSGMCLNVSGGSLSPGAPLIQ CCEECCCCCEEEECCCCCCCCCCCEEEEECCCCEEEEEECCCCEEEECCCCCCCCCCEEE YPCQGANALNDQFSLSLPQTFPVTLPSAWSPVIPLPVNPIGIANAPNGKLVMWSADQQLS CCCCCCCCCCCCEEEECCCCCCEECCCCCCCEECCCCCCCEECCCCCCCEEEEECCCCCE FQNDVGSKATQTQTAVFDPATNTATQYLETSAGSDMFCTGTAMLPDGRLLVNGGDSSPKT ECCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCEEEEEEEECCCCEEEEECCCCCCCE TLYDWTTNTWSAAATMNIARGYQGDTLLSNGSVLTLGGSWSGGQGGKTAEVWTNGGAWTL EEEEECCCCCCEEEEEEECCCCCCCEEECCCCEEEECCCCCCCCCCCEEEEEECCCCEEE LPGVPETNIVGPDPQGIYRGDNHLWLFAQGNGTVFHAGPSSQMNWISTAGGGSIQSAGMR ECCCCCCCEECCCCCCEEECCCEEEEEECCCCEEEECCCCCCCCEEEECCCCCCCCCCCC GVDPFSINGTASLYDVGKILKAGGAKSYQQNGSVTTYASNSVYQIDITRGPNQPASVQRL CCCCEECCCCCHHHHHHHHHHCCCCCCHHCCCCEEEEECCCEEEEEEECCCCCCCHHHHH NGMTYQRAFANSVILPNGSIVMIGGQSVPMPFTDTTAIMVPEIWDPATQRFNLLKPMQTP CCCEEEHHHHCCEEECCCCEEEECCCCCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCC RTYHSTAILMADGRVFAGGGGQCGTGCAMNHLNAEILTPPYLLNADGTPAPRPVITNAPA CCCCCEEEEEECCEEEECCCCCCCCCHHHHCCCCEEECCCEEECCCCCCCCCCEEECCCC TAKLGATIAVSTQGPVASFVLMRLSSVTHTTNNDQRRIPLAIASSGGTSYQLAIPADPGV CEECCEEEEEECCCCHHHHHHHHHHHHEECCCCCCEEEEEEEECCCCCEEEEEECCCCCE VLPGYYMLFALNAQGVPSVSASIRIS ECCCEEEEEEECCCCCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA