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The map label for this gene is oppB [H]

Identifier: 126447159

GI number: 126447159

Start: 342091

End: 343029

Strand: Direct

Name: oppB [H]

Synonym: BMA10247_A0386

Alternate gene names: 126447159

Gene position: 342091-343029 (Clockwise)

Preceding gene: 126447525

Following gene: 126446616

Centisome position: 14.54

GC content: 67.09

Gene sequence:

>939_bases
ATGCTGGCCTACGCATTGCGGCGCACGCTATGGGCGGTGCCGACGATCCTCGCCGTCGTCACGGTCTGCTATCTGCTGCT
GCATTTCACGCCCGGCGGGCCGTTCGACAGCGAGAAGCAGCTGTCCGCCGCGACGCTCGCGAACCTGAACGCGAAGTACC
ACCTCGACGAGCCGCGGTGGAAGCAGTACCTGCTGTATCTCGGCTCGCTGCTGCACGGCGATCTCGGCCCCTCGTTCCGC
TATACGGACTGGTCCGTGAACGATCTGGTGCGCAAGGCGTTTCCGGTGAGTCTGGGCGTCGGCGGCGTGTCGATTCCGCT
GTCTATCGTGCTCGGCGTGCTGCTTGGCACGCTCGCCGCGGTGCGCCGCGACAGCTTCGTCGACCGCTTCGTGATGCTGA
TCGGCAACTTCGGCAATGTGATTCCGCCGTTCGTGCTCGGCCCGGTGCTCGTGCTGATCTTCGCGATCGGGCTGAAGACG
TCCGAGGGCGCGGGCTGGCTGCCCGCGGGCGGCTGGGGCGACGGCGGCTGGCGCTACCGTGTGCTGCCCGTCACGCTGCT
CACGCTGATCAACGTGTCGCTGCTCGCGCGCGTGATGCGCGGCTCGATGATCGAGACGCTGTCGAGCAACTACATTCGCA
CCGCGCGCGCGAAGGGGCTGCCCGGCCGCACGATCGTGCTGCGCCATGCGCTCAAGCCCGCGCTGATGCCCGTCGTGTCG
CTGTTCGGCACGGTATGCATCTCGTCGATCACCGCGGCCGTCGTGACGGAATCGGTGTTCGCGCTGCCGGGCCTCGGCCA
GCTCGTCGTCAACGGCGCGATCAATCGCGACTACACGCTCGTGCTCGGTCTCGTCGTGCTGACGACCGTCTGCGCGGTGC
TGTTCAACCTGCTGGTCGATCTCGCGTACGCGTGGCTCGATCCGCGCATCCGCTATTGA

Upstream 100 bases:

>100_bases
TGAAGTCGTACGTCGGCGGCTACACGCTGACGAACTACATCGACATGCGCGCCTCGCAGGACATGTACCTGATCAAGCAC
TGACTGGAGCGGAGCCGATC

Downstream 100 bases:

>100_bases
GGGGCGACGCGATGACGCCTGTTACCTCTTCGATCGAGCTGCCGACGGCGGCCGACGCGCCGCCGCGCTCGCGCACGCCG
CTCGGGCTTGCCGCGCGGCA

Product: oligopeptide ABC transporter, permease protein OppB

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MLAYALRRTLWAVPTILAVVTVCYLLLHFTPGGPFDSEKQLSAATLANLNAKYHLDEPRWKQYLLYLGSLLHGDLGPSFR
YTDWSVNDLVRKAFPVSLGVGGVSIPLSIVLGVLLGTLAAVRRDSFVDRFVMLIGNFGNVIPPFVLGPVLVLIFAIGLKT
SEGAGWLPAGGWGDGGWRYRVLPVTLLTLINVSLLARVMRGSMIETLSSNYIRTARAKGLPGRTIVLRHALKPALMPVVS
LFGTVCISSITAAVVTESVFALPGLGQLVVNGAINRDYTLVLGLVVLTTVCAVLFNLLVDLAYAWLDPRIRY

Sequences:

>Translated_312_residues
MLAYALRRTLWAVPTILAVVTVCYLLLHFTPGGPFDSEKQLSAATLANLNAKYHLDEPRWKQYLLYLGSLLHGDLGPSFR
YTDWSVNDLVRKAFPVSLGVGGVSIPLSIVLGVLLGTLAAVRRDSFVDRFVMLIGNFGNVIPPFVLGPVLVLIFAIGLKT
SEGAGWLPAGGWGDGGWRYRVLPVTLLTLINVSLLARVMRGSMIETLSSNYIRTARAKGLPGRTIVLRHALKPALMPVVS
LFGTVCISSITAAVVTESVFALPGLGQLVVNGAINRDYTLVLGLVVLTTVCAVLFNLLVDLAYAWLDPRIRY
>Mature_312_residues
MLAYALRRTLWAVPTILAVVTVCYLLLHFTPGGPFDSEKQLSAATLANLNAKYHLDEPRWKQYLLYLGSLLHGDLGPSFR
YTDWSVNDLVRKAFPVSLGVGGVSIPLSIVLGVLLGTLAAVRRDSFVDRFVMLIGNFGNVIPPFVLGPVLVLIFAIGLKT
SEGAGWLPAGGWGDGGWRYRVLPVTLLTLINVSLLARVMRGSMIETLSSNYIRTARAKGLPGRTIVLRHALKPALMPVVS
LFGTVCISSITAAVVTESVFALPGLGQLVVNGAINRDYTLVLGLVVLTTVCAVLFNLLVDLAYAWLDPRIRY

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787497, Length=312, Percent_Identity=49.6794871794872, Blast_Score=318, Evalue=2e-88,
Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=32.2485207100592, Blast_Score=171, Evalue=7e-44,
Organism=Escherichia coli, GI1787053, Length=314, Percent_Identity=32.8025477707006, Blast_Score=167, Evalue=6e-43,
Organism=Escherichia coli, GI1789888, Length=316, Percent_Identity=32.9113924050633, Blast_Score=155, Evalue=3e-39,
Organism=Escherichia coli, GI1787761, Length=329, Percent_Identity=34.3465045592705, Blast_Score=144, Evalue=6e-36,
Organism=Escherichia coli, GI1788504, Length=373, Percent_Identity=25.4691689008043, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1787550, Length=337, Percent_Identity=26.4094955489614, Blast_Score=109, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33817; Mature: 33817

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAYALRRTLWAVPTILAVVTVCYLLLHFTPGGPFDSEKQLSAATLANLNAKYHLDEPRW
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCEEECCCHHH
KQYLLYLGSLLHGDLGPSFRYTDWSVNDLVRKAFPVSLGVGGVSIPLSIVLGVLLGTLAA
HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHHHHH
VRRDSFVDRFVMLIGNFGNVIPPFVLGPVLVLIFAIGLKTSEGAGWLPAGGWGDGGWRYR
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEE
VLPVTLLTLINVSLLARVMRGSMIETLSSNYIRTARAKGLPGRTIVLRHALKPALMPVVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
LFGTVCISSITAAVVTESVFALPGLGQLVVNGAINRDYTLVLGLVVLTTVCAVLFNLLVD
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LAYAWLDPRIRY
HHHHHCCCCCCC
>Mature Secondary Structure
MLAYALRRTLWAVPTILAVVTVCYLLLHFTPGGPFDSEKQLSAATLANLNAKYHLDEPRW
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCEEECCCHHH
KQYLLYLGSLLHGDLGPSFRYTDWSVNDLVRKAFPVSLGVGGVSIPLSIVLGVLLGTLAA
HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHHHHH
VRRDSFVDRFVMLIGNFGNVIPPFVLGPVLVLIFAIGLKTSEGAGWLPAGGWGDGGWRYR
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEE
VLPVTLLTLINVSLLARVMRGSMIETLSSNYIRTARAKGLPGRTIVLRHALKPALMPVVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
LFGTVCISSITAAVVTESVFALPGLGQLVVNGAINRDYTLVLGLVVLTTVCAVLFNLLVD
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LAYAWLDPRIRY
HHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]