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The map label for this gene is hrpA [H]

Identifier: 126447025

GI number: 126447025

Start: 603942

End: 605732

Strand: Direct

Name: hrpA [H]

Synonym: BMA10247_A0655

Alternate gene names: 126447025

Gene position: 603942-605732 (Clockwise)

Preceding gene: 126447148

Following gene: 126446096

Centisome position: 25.67

GC content: 78.89

Gene sequence:

>1791_bases
GTGACGCGGCGCGCGGCCGCATCGGCTGCCGCCGTCGCGCTCGCGCTCGCGAGCCATGCGGCGGCGCTGCGGGCGGTGCC
GCTCGCGTGGCCGCTCGCGCGTTTCGACTATCGCGTCGGCCCGGTGAACGCCGCCGATGCATTGGGCGAGCTGAGCCGCC
GCTCGGGCATCGCCATCGACGTCGACGCGCGCGCGCCGTGCCGGCTCGACGTGCGCGAGGCGCTGCCGCCGCGGCGCTTC
GTCGAGCGGCTCGCGCGCACCTGCGGGCTCGTGTCGTACTACGACGGCGCGGTGTTGCAGCTCGTCGCGTCCGACGCGTT
CGAGCACGCGGCGGTGCGGCTCAATTACGCGACGCTCGCCGAGCTGCGCGCGGCGCTCGCGCGGCAGCGGATCGTCGACG
CGCGCTGGCGGCCCGGCTATGACGACGCGGCGCGGATCGCGCGCGTCGCCGGCCCGCCGCGCTATGTCGCGCTCGTGCTT
GCCGCCGCGCGCGCGCTCGACGAGGCCGCGCAGACGCGCGTGCGCACCGAGACGCGCGCGTTCCGGCTGCGCGCGCGCGC
GGCGGCCGACCGCGTCGTGCGCGGCGATGGCGACGGCGACGATGCGGTGCTGCCCGGGCTCGCGACGCGACTGCGCCGCC
GGCTCGAGCAGGACGGCGCCGAGCCGCGCGCGGTGCCGGGCGTGCGCGAATTCACCGCATCGTTGCCGATCGTCGACGCG
GACGCACGCTCGAACACCGTGCTGATCCGCGACGTGCCCGCACGGCTCGCGCACGACGCGCGGCTCGTCGCGCAGCTCGA
TACGCGGCCCGCGTCGATCCGGATCGACGCGTTCGGCGCAACGCTCGCGCCCGCGCAGCTCGACGCGCTCGGGCTGCGAT
GGCGCGACGGCGCGCCGGCTTCGGGCGCGTCGCGCGATGCGGGCGTCGCGCGCGACGGTTCGCGTGCGTCGGCGGGCGGC
CGGCTCGTGGGCGCGTCCCGCCCGTCCGGCGCGCGGAACGAGGCGGCCGCGGCGGGGGCGCGGCGTGCGCCCGCGGTGTC
CGCCGCACCCGACGCGTCGGGCGCATCCGCCGCATCCGGCCCATCCGCCGCCTCAGGCGCTCCCGACGCCGTCGACGCAT
CCGCCGGCTCGGCCGACTCTCCCCGCGCATCCGCGGTGCGCATCGCGATCGTGTCCACGCCTGCCGGCTGCGCGCCGGTG
CGCGCGCGCATCGCCGAGCTTGCCGCGCACGGCGACGCGTCGATCGACGCCGACGACTCGACGCTGGCGCTTCCCGATAG
CCGCGCGGATTTCGGCCGGCTGCGGCTGTCGTTCGTCGCGTCGGGCGATGGCGACGCGCGCGCGCTCGATGCGCGGCGCA
ACGGTTTCGCGATGCGGGTCACGCCGCACGAGACCGCGCAGCCGGCGCGCTACGCGCTCGACATACGGATCGTCGAGCGT
CGGGCCGACGGCGACGCGGCCGGCGCGTCGTCGCGCGAAACCGTGGCCGGCGTGACGCTCGCGGCGGGCGAGTGCGCGGC
GCTCGCGCTGCCGTCGGCCGCGCACGGCGAGCAGCGGCTCGTGCTGGTGATGCCGCGAGCGGTGCCGGCCGATCCGGCGC
GCTTGCCGCCGCAGGCCTTGCCGAACGCGCCGGCGGCCGCGGCCGTCGCCGCCAACGCACGGGGGCCCGACGCCGCCGAG
CCCGCGGCGCGCGCGCAGGCGGCCGCGCGCGCGCATCCGCCGGCGGCGCCGCTGCCTTCGCCGTCCGCCGGCCTCGGCTT
GCGGGCGCAGACCCGCCTGCTCGGCAATTGA

Upstream 100 bases:

>100_bases
GGCTGAAGGCGGCGGGCATCGGCTGGACCGTGCATGCGGCGTACGCGACCGGCTACCGCCTGAACCTCGGCGCGGACGCG
GAAACGGCGGACCGCGCGTC

Downstream 100 bases:

>100_bases
TGCGAATTCCGCCGTGATTAAACGGCGCTCAATCAACGGTCATCAAATGGCCATCAAACGTCGATCAAACGTCGATCGCG
CACGATTTAGGCGCACGATG

Product: type II/III secretion system family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 596; Mature: 595

Protein sequence:

>596_residues
MTRRAAASAAAVALALASHAAALRAVPLAWPLARFDYRVGPVNAADALGELSRRSGIAIDVDARAPCRLDVREALPPRRF
VERLARTCGLVSYYDGAVLQLVASDAFEHAAVRLNYATLAELRAALARQRIVDARWRPGYDDAARIARVAGPPRYVALVL
AAARALDEAAQTRVRTETRAFRLRARAAADRVVRGDGDGDDAVLPGLATRLRRRLEQDGAEPRAVPGVREFTASLPIVDA
DARSNTVLIRDVPARLAHDARLVAQLDTRPASIRIDAFGATLAPAQLDALGLRWRDGAPASGASRDAGVARDGSRASAGG
RLVGASRPSGARNEAAAAGARRAPAVSAAPDASGASAASGPSAASGAPDAVDASAGSADSPRASAVRIAIVSTPAGCAPV
RARIAELAAHGDASIDADDSTLALPDSRADFGRLRLSFVASGDGDARALDARRNGFAMRVTPHETAQPARYALDIRIVER
RADGDAAGASSRETVAGVTLAAGECAALALPSAAHGEQRLVLVMPRAVPADPARLPPQALPNAPAAAAVAANARGPDAAE
PAARAQAAARAHPPAAPLPSPSAGLGLRAQTRLLGN

Sequences:

>Translated_596_residues
MTRRAAASAAAVALALASHAAALRAVPLAWPLARFDYRVGPVNAADALGELSRRSGIAIDVDARAPCRLDVREALPPRRF
VERLARTCGLVSYYDGAVLQLVASDAFEHAAVRLNYATLAELRAALARQRIVDARWRPGYDDAARIARVAGPPRYVALVL
AAARALDEAAQTRVRTETRAFRLRARAAADRVVRGDGDGDDAVLPGLATRLRRRLEQDGAEPRAVPGVREFTASLPIVDA
DARSNTVLIRDVPARLAHDARLVAQLDTRPASIRIDAFGATLAPAQLDALGLRWRDGAPASGASRDAGVARDGSRASAGG
RLVGASRPSGARNEAAAAGARRAPAVSAAPDASGASAASGPSAASGAPDAVDASAGSADSPRASAVRIAIVSTPAGCAPV
RARIAELAAHGDASIDADDSTLALPDSRADFGRLRLSFVASGDGDARALDARRNGFAMRVTPHETAQPARYALDIRIVER
RADGDAAGASSRETVAGVTLAAGECAALALPSAAHGEQRLVLVMPRAVPADPARLPPQALPNAPAAAAVAANARGPDAAE
PAARAQAAARAHPPAAPLPSPSAGLGLRAQTRLLGN
>Mature_595_residues
TRRAAASAAAVALALASHAAALRAVPLAWPLARFDYRVGPVNAADALGELSRRSGIAIDVDARAPCRLDVREALPPRRFV
ERLARTCGLVSYYDGAVLQLVASDAFEHAAVRLNYATLAELRAALARQRIVDARWRPGYDDAARIARVAGPPRYVALVLA
AARALDEAAQTRVRTETRAFRLRARAAADRVVRGDGDGDDAVLPGLATRLRRRLEQDGAEPRAVPGVREFTASLPIVDAD
ARSNTVLIRDVPARLAHDARLVAQLDTRPASIRIDAFGATLAPAQLDALGLRWRDGAPASGASRDAGVARDGSRASAGGR
LVGASRPSGARNEAAAAGARRAPAVSAAPDASGASAASGPSAASGAPDAVDASAGSADSPRASAVRIAIVSTPAGCAPVR
ARIAELAAHGDASIDADDSTLALPDSRADFGRLRLSFVASGDGDARALDARRNGFAMRVTPHETAQPARYALDIRIVERR
ADGDAAGASSRETVAGVTLAAGECAALALPSAAHGEQRLVLVMPRAVPADPARLPPQALPNAPAAAAVAANARGPDAAEP
AARAQAAARAHPPAAPLPSPSAGLGLRAQTRLLGN

Specific function: Involved in the secretion of a proteinaceous elicitor of the hypersensitivity response in plants [H]

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR004845
- InterPro:   IPR003522 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 61107; Mature: 60976

Theoretical pI: Translated: 11.18; Mature: 11.18

Prosite motif: PS00211 ABC_TRANSPORTER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRRAAASAAAVALALASHAAALRAVPLAWPLARFDYRVGPVNAADALGELSRRSGIAID
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECCCCCHHHHHHHHHHHCCCEEE
VDARAPCRLDVREALPPRRFVERLARTCGLVSYYDGAVLQLVASDAFEHAAVRLNYATLA
ECCCCCCCCCHHHCCCHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHEEECHHHHH
ELRAALARQRIVDARWRPGYDDAARIARVAGPPRYVALVLAAARALDEAAQTRVRTETRA
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FRLRARAAADRVVRGDGDGDDAVLPGLATRLRRRLEQDGAEPRAVPGVREFTASLPIVDA
HHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCEEEC
DARSNTVLIRDVPARLAHDARLVAQLDTRPASIRIDAFGATLAPAQLDALGLRWRDGAPA
CCCCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHCCEECCCCCC
SGASRDAGVARDGSRASAGGRLVGASRPSGARNEAAAAGARRAPAVSAAPDASGASAASG
CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCC
PSAASGAPDAVDASAGSADSPRASAVRIAIVSTPAGCAPVRARIAELAAHGDASIDADDS
CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCC
TLALPDSRADFGRLRLSFVASGDGDARALDARRNGFAMRVTPHETAQPARYALDIRIVER
EEECCCCCCCCCEEEEEEEECCCCCCEEEHHCCCCEEEEECCCCCCCCCCEEEEEEEEEE
RADGDAAGASSRETVAGVTLAAGECAALALPSAAHGEQRLVLVMPRAVPADPARLPPQAL
CCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCEEEEEECCCCCCCCCCCCHHHC
PNAPAAAAVAANARGPDAAEPAARAQAAARAHPPAAPLPSPSAGLGLRAQTRLLGN
CCCCCHHHEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCC
>Mature Secondary Structure 
TRRAAASAAAVALALASHAAALRAVPLAWPLARFDYRVGPVNAADALGELSRRSGIAID
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECCCCCHHHHHHHHHHHCCCEEE
VDARAPCRLDVREALPPRRFVERLARTCGLVSYYDGAVLQLVASDAFEHAAVRLNYATLA
ECCCCCCCCCHHHCCCHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHEEECHHHHH
ELRAALARQRIVDARWRPGYDDAARIARVAGPPRYVALVLAAARALDEAAQTRVRTETRA
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FRLRARAAADRVVRGDGDGDDAVLPGLATRLRRRLEQDGAEPRAVPGVREFTASLPIVDA
HHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCEEEC
DARSNTVLIRDVPARLAHDARLVAQLDTRPASIRIDAFGATLAPAQLDALGLRWRDGAPA
CCCCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHCCEECCCCCC
SGASRDAGVARDGSRASAGGRLVGASRPSGARNEAAAAGARRAPAVSAAPDASGASAASG
CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCC
PSAASGAPDAVDASAGSADSPRASAVRIAIVSTPAGCAPVRARIAELAAHGDASIDADDS
CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCC
TLALPDSRADFGRLRLSFVASGDGDARALDARRNGFAMRVTPHETAQPARYALDIRIVER
EEECCCCCCCCCEEEEEEEECCCCCCEEEHHCCCCEEEEECCCCCCCCCCEEEEEEEEEE
RADGDAAGASSRETVAGVTLAAGECAALALPSAAHGEQRLVLVMPRAVPADPARLPPQAL
CCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCEEEEEECCCCCCCCCCCCHHHC
PNAPAAAAVAANARGPDAAEPAARAQAAARAHPPAAPLPSPSAGLGLRAQTRLLGN
CCCCCHHHEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1472716; 7623665; 11823852 [H]