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The map label for this gene is xerD [C]

Identifier: 126446250

GI number: 126446250

Start: 2420

End: 3463

Strand: Reverse

Name: xerD [C]

Synonym: BMA10247_A0003

Alternate gene names: 126446250

Gene position: 3463-2420 (Counterclockwise)

Preceding gene: 126445889

Following gene: 126447657

Centisome position: 0.15

GC content: 64.37

Gene sequence:

>1044_bases
ATGTCGCTGCCCATTCTGACGAGTCCCCCTTCGCCGCCCGATATCCCGAGCGATCTGTTCGATCGCGATACGTCGGACTG
GCTCAACCATCCGGACACCGCATTCGATGCGTGGCTGGCCGCCCAGGAATTTCGCCGGTCGTCAGCTGACGTCTACCGCG
CGCAATGGGGTGCGTTTCTCGGCTGGCTCGCGAAACGGCAAAAGAACCTCGCGACGGTCGACACCGAGACGATCGCCCTT
TTCGTCGGCGAGCTGCCGATCAAGAAGACGCAGCGAGTCCGCTACTTGAGGCTGATCGAGCGCGTGCTCGATCACGTGCG
CAAGAACGAATTCGGTTCGACGAATCCTGCCCGTTTCATTGCTCAGGACGGCGAAGCAACTTGGCGCACCGCGCGCGACA
ACGAGCCGACGAGCTTTCTCGCACCGGCCGAACGCGCCGCGCTGCTTGCCTATCTGTTCTCCCCACTGCCCGCGGCAGGC
GCGGCGCTCTGGAAGAAACGCCGCGATCGCGCGCTGATTGCCGCGTTCCTCGGCGGCGGACTGAAGACGGGCGAGGCGCG
AGCGCTTACGATTAGTTGCGTCAAACTCGGATCGACCATGCTGACGATTCCGGCGGCTCAGCCGGAATTCACGCGCGAAA
CGCATCTCGCGTCGTTCGCGATCGCGCTGTTCGACGCGTGGCTCGCCGAGCGTCAGCGCTGCGGCATTCCGGGCGAGCTT
GTCTTTCCCGCCTCGCAATCCGGGCGGCCGATGCACAAGGCGACGATGCTGCGCGCGGTCGATGCGATCGTCGACGCGGC
CGACATCGCGCAATCGCGCACCGCACGCGCCAGCCCGCAGACGTTGCGCAACACGTTCGCGGCCGAACTGTTCGAAAACG
GCGTCGAGCCGGAGAAAGTCGGTCAGTGGCTGGGGTTCGCCCAGCCGATTTCGTCGAATCGTCTGCATCGGGCCTGGAAG
AATTGGCGGGAAAGCCTCGCCAGTGCGCTACCCAATGCCGAATCGCTCACCGATGAAATATCGACCGAGCCAAGCCGGGC
TTGA

Upstream 100 bases:

>100_bases
GGCGGTTCGCCCGCCGCCGGGTTCTTGCCGCTGACTCGAAAACTCTTTGTCGAGCGAACGCGACACGCTATGATGAATTG
CAACTAACGGGATAAATGAC

Downstream 100 bases:

>100_bases
AATCCGCGTTTTCGATCTCCCGAAAACGCTCACCTTTCCTTATTTTCCGGGTCCCGAAAATCCTCACCTTTGAGGACTTC
GGGGCGCCTTCCGTCATGTT

Product: phage integrase family site specific recombinase

Products: NA

Alternate protein names: Phage Integrase Family Protein; Integrase/Recombinase Protein; Phage Integrase; Integrase/Recombinase; DNA Integration/Recombination/Inversion Protein; Integrase; Phage Integrase / Tyr Recombinase Protein; Site-Specific Recombinase Phage Integrase Family Protein; Integrase Or Site-Specific Recombinase

Number of amino acids: Translated: 347; Mature: 346

Protein sequence:

>347_residues
MSLPILTSPPSPPDIPSDLFDRDTSDWLNHPDTAFDAWLAAQEFRRSSADVYRAQWGAFLGWLAKRQKNLATVDTETIAL
FVGELPIKKTQRVRYLRLIERVLDHVRKNEFGSTNPARFIAQDGEATWRTARDNEPTSFLAPAERAALLAYLFSPLPAAG
AALWKKRRDRALIAAFLGGGLKTGEARALTISCVKLGSTMLTIPAAQPEFTRETHLASFAIALFDAWLAERQRCGIPGEL
VFPASQSGRPMHKATMLRAVDAIVDAADIAQSRTARASPQTLRNTFAAELFENGVEPEKVGQWLGFAQPISSNRLHRAWK
NWRESLASALPNAESLTDEISTEPSRA

Sequences:

>Translated_347_residues
MSLPILTSPPSPPDIPSDLFDRDTSDWLNHPDTAFDAWLAAQEFRRSSADVYRAQWGAFLGWLAKRQKNLATVDTETIAL
FVGELPIKKTQRVRYLRLIERVLDHVRKNEFGSTNPARFIAQDGEATWRTARDNEPTSFLAPAERAALLAYLFSPLPAAG
AALWKKRRDRALIAAFLGGGLKTGEARALTISCVKLGSTMLTIPAAQPEFTRETHLASFAIALFDAWLAERQRCGIPGEL
VFPASQSGRPMHKATMLRAVDAIVDAADIAQSRTARASPQTLRNTFAAELFENGVEPEKVGQWLGFAQPISSNRLHRAWK
NWRESLASALPNAESLTDEISTEPSRA
>Mature_346_residues
SLPILTSPPSPPDIPSDLFDRDTSDWLNHPDTAFDAWLAAQEFRRSSADVYRAQWGAFLGWLAKRQKNLATVDTETIALF
VGELPIKKTQRVRYLRLIERVLDHVRKNEFGSTNPARFIAQDGEATWRTARDNEPTSFLAPAERAALLAYLFSPLPAAGA
ALWKKRRDRALIAAFLGGGLKTGEARALTISCVKLGSTMLTIPAAQPEFTRETHLASFAIALFDAWLAERQRCGIPGELV
FPASQSGRPMHKATMLRAVDAIVDAADIAQSRTARASPQTLRNTFAAELFENGVEPEKVGQWLGFAQPISSNRLHRAWKN
WRESLASALPNAESLTDEISTEPSRA

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38363; Mature: 38232

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLPILTSPPSPPDIPSDLFDRDTSDWLNHPDTAFDAWLAAQEFRRSSADVYRAQWGAFL
CCCCCCCCCCCCCCCCHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GWLAKRQKNLATVDTETIALFVGELPIKKTQRVRYLRLIERVLDHVRKNEFGSTNPARFI
HHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEE
AQDGEATWRTARDNEPTSFLAPAERAALLAYLFSPLPAAGAALWKKRRDRALIAAFLGGG
ECCCCCCCCCCCCCCCCHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC
LKTGEARALTISCVKLGSTMLTIPAAQPEFTRETHLASFAIALFDAWLAERQRCGIPGEL
CCCCCCCEEEEHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
VFPASQSGRPMHKATMLRAVDAIVDAADIAQSRTARASPQTLRNTFAAELFENGVEPEKV
EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHH
GQWLGFAQPISSNRLHRAWKNWRESLASALPNAESLTDEISTEPSRA
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SLPILTSPPSPPDIPSDLFDRDTSDWLNHPDTAFDAWLAAQEFRRSSADVYRAQWGAFL
CCCCCCCCCCCCCCCHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GWLAKRQKNLATVDTETIALFVGELPIKKTQRVRYLRLIERVLDHVRKNEFGSTNPARFI
HHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEE
AQDGEATWRTARDNEPTSFLAPAERAALLAYLFSPLPAAGAALWKKRRDRALIAAFLGGG
ECCCCCCCCCCCCCCCCHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC
LKTGEARALTISCVKLGSTMLTIPAAQPEFTRETHLASFAIALFDAWLAERQRCGIPGEL
CCCCCCCEEEEHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
VFPASQSGRPMHKATMLRAVDAIVDAADIAQSRTARASPQTLRNTFAAELFENGVEPEKV
EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHH
GQWLGFAQPISSNRLHRAWKNWRESLASALPNAESLTDEISTEPSRA
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA