Click here to switch to the map view.

The map label for this gene is atpD [H]

Identifier: 126446164

GI number: 126446164

Start: 121630

End: 123234

Strand: Direct

Name: atpD [H]

Synonym: BMA10247_A0147

Alternate gene names: 126446164

Gene position: 121630-123234 (Clockwise)

Preceding gene: 126445615

Following gene: 126446686

Centisome position: 5.17

GC content: 74.02

Gene sequence:

>1605_bases
GTGGCGGATCCGCAGGCGACGAACGGCACGGGCGCGGTGTGCGCGGAGCGCGACGCGAGCGACGTGGGCGATGTGAGCGA
CGTGGGCGATGCGCGTGACGAGGGCGCCGGCCGCGTCGTCGCGGTGCGCGGCGCGGTGGTCGACGTCGCGTTCGACGGCG
GCGCGCTGCCCGCGCTGAACGAAGCGCTCACGATCCCGGTCGACGGCGCCGCGCCGATTCTCGCCGAGGTGCACGCACAC
CTGAGCGACGCGGCGGTGCGCGCGCTCGCGCTCGGCCCGACGGGCGGCCTGCGGCGCGGCGCCGCCGTGCGCGCGACGGG
CGGGCCGATTCGCGTGCCTGTCGGCGACGCGGTGCTCGGCCGCCTGCTGAGCGTGACGGGCGCGCCCGGCGACGACGGCG
CGGCGCTTGCGGCGGACGTCGAGCGGCGGCCGATCCATCGCGGCGCGCCGCTGCTCGCCGAGCAGAAGAGCGCGAACGCG
CTGTTCGCGACCGGCATCAAGGTGATCGATCTGCTCGCGCCGCTCGCGCAGGGCGGCAAGGCCGCGATGTTCGGCGGCGC
GGGCGTGGGCAAGACGGTGTTCGTGATGGAGTTGATCCATGCGATGGTCGAGCGCTATCGCGGGATCTCGGTGTTCGCGG
GCATCGGCGAGCGCTCGCGCGAGGGGCACGAGATGCTGCTCGACATGCGCGGCTCCGGCGTGCTCGGCCGCACGGTGCTC
GTCTACGGGCAGATGAACGAGCCGCCCGGCGCGCGCTGGCGCGTGCCGCTCACCGCGCTCGCGATCGCCGAGTATTTTCG
CGACGAGCGCGCGCAGAACGTGCTGCTGCTGATGGACAACGTGTTTCGCTTCGTGCAGGCGGGCGCCGAGGTGTCGGGCC
TGCTCGGGCGGCTGCCGTCGCGGGTCGGCTACCAGCCGACGCTCGCGAGCGAGGTCGCGGCGCTGCAGGAGCGGATCGCC
TCGGTCGAGGGCGCGGCGGTGACCGCGATCGAGGCCGTCTACGTGCCCGCCGACGATTTCACCGATCCCGCCGTCACCGC
GATCGCCGCGCACGTCGACAGCATGGTCGTGCTGTCGCGCGCGATGGCGGCCGAAGGAATGTATCCGGCGATCGATCCGG
TCGCGTCGTCGTCGATCCTGCTCGATCCGCTCGTCGTCGGCGAAGCGCACGTGGAGGTGGCCATCGAGGTGCGCCGCGTG
ATCGAGCATTACCGCGAATTGCAGGACGTGATCGCGTTGCTCGGCATCGATGAGCTCGGCGCGGACGACCGGCGGCTCGT
CGGCCGCGCGCGCCGGCTGCAGCGCTTTCTCACGCAGCCGTTCGCGGTGACCGAGGCGTTCACGGGGCAGGCGGGCGCGT
CGGTCGAGATCGCCGACACGATCGCCGGTTGCCGCGCGATCCTGCGCGGCGACTGCGACGACTGGCGCGAGAGTTCGCTG
TACATGGTCGGCACGCTCGACGACGCGCGGCGCAAGGAAGCGGCGGCGCGCGAAGCGGACGCGCGCCGCGAGGCGGCTGC
CGCGGCGTCGGGCGCGGGACCGGGCACGACATCCGACCCCGCATCCGGCTCCGCCGAGCCGCAAGGCGCGCGGCATGGGC
GCTGA

Upstream 100 bases:

>100_bases
TTTCGTCTGGCGATTCCCCGTTTCTTGACCGAGATCAGCCGGCGGGCGGCGCGCGCCGTTATGGTGAAGCCATCGACGAA
CCAGCCAGACGGGAGCGACG

Downstream 100 bases:

>100_bases
GCTGCGCGTGACGATCGCGACGCCGGCGCGCGTGTGCGTCGACGATCTGCCGATCGTGTCGCTGCGCGCCGAGGACGCGA
GCGGCGCGTTCGGCATCCGC

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta 2; F-ATPase subunit beta 2 [H]

Number of amino acids: Translated: 534; Mature: 533

Protein sequence:

>534_residues
MADPQATNGTGAVCAERDASDVGDVSDVGDARDEGAGRVVAVRGAVVDVAFDGGALPALNEALTIPVDGAAPILAEVHAH
LSDAAVRALALGPTGGLRRGAAVRATGGPIRVPVGDAVLGRLLSVTGAPGDDGAALAADVERRPIHRGAPLLAEQKSANA
LFATGIKVIDLLAPLAQGGKAAMFGGAGVGKTVFVMELIHAMVERYRGISVFAGIGERSREGHEMLLDMRGSGVLGRTVL
VYGQMNEPPGARWRVPLTALAIAEYFRDERAQNVLLLMDNVFRFVQAGAEVSGLLGRLPSRVGYQPTLASEVAALQERIA
SVEGAAVTAIEAVYVPADDFTDPAVTAIAAHVDSMVVLSRAMAAEGMYPAIDPVASSSILLDPLVVGEAHVEVAIEVRRV
IEHYRELQDVIALLGIDELGADDRRLVGRARRLQRFLTQPFAVTEAFTGQAGASVEIADTIAGCRAILRGDCDDWRESSL
YMVGTLDDARRKEAAAREADARREAAAAASGAGPGTTSDPASGSAEPQGARHGR

Sequences:

>Translated_534_residues
MADPQATNGTGAVCAERDASDVGDVSDVGDARDEGAGRVVAVRGAVVDVAFDGGALPALNEALTIPVDGAAPILAEVHAH
LSDAAVRALALGPTGGLRRGAAVRATGGPIRVPVGDAVLGRLLSVTGAPGDDGAALAADVERRPIHRGAPLLAEQKSANA
LFATGIKVIDLLAPLAQGGKAAMFGGAGVGKTVFVMELIHAMVERYRGISVFAGIGERSREGHEMLLDMRGSGVLGRTVL
VYGQMNEPPGARWRVPLTALAIAEYFRDERAQNVLLLMDNVFRFVQAGAEVSGLLGRLPSRVGYQPTLASEVAALQERIA
SVEGAAVTAIEAVYVPADDFTDPAVTAIAAHVDSMVVLSRAMAAEGMYPAIDPVASSSILLDPLVVGEAHVEVAIEVRRV
IEHYRELQDVIALLGIDELGADDRRLVGRARRLQRFLTQPFAVTEAFTGQAGASVEIADTIAGCRAILRGDCDDWRESSL
YMVGTLDDARRKEAAAREADARREAAAAASGAGPGTTSDPASGSAEPQGARHGR
>Mature_533_residues
ADPQATNGTGAVCAERDASDVGDVSDVGDARDEGAGRVVAVRGAVVDVAFDGGALPALNEALTIPVDGAAPILAEVHAHL
SDAAVRALALGPTGGLRRGAAVRATGGPIRVPVGDAVLGRLLSVTGAPGDDGAALAADVERRPIHRGAPLLAEQKSANAL
FATGIKVIDLLAPLAQGGKAAMFGGAGVGKTVFVMELIHAMVERYRGISVFAGIGERSREGHEMLLDMRGSGVLGRTVLV
YGQMNEPPGARWRVPLTALAIAEYFRDERAQNVLLLMDNVFRFVQAGAEVSGLLGRLPSRVGYQPTLASEVAALQERIAS
VEGAAVTAIEAVYVPADDFTDPAVTAIAAHVDSMVVLSRAMAAEGMYPAIDPVASSSILLDPLVVGEAHVEVAIEVRRVI
EHYRELQDVIALLGIDELGADDRRLVGRARRLQRFLTQPFAVTEAFTGQAGASVEIADTIAGCRAILRGDCDDWRESSLY
MVGTLDDARRKEAAAREADARREAAAAASGAGPGTTSDPASGSAEPQGARHGR

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=463, Percent_Identity=50.3239740820734, Blast_Score=462, Evalue=1e-130,
Organism=Homo sapiens, GI19913424, Length=324, Percent_Identity=27.4691358024691, Blast_Score=108, Evalue=2e-23,
Organism=Homo sapiens, GI19913426, Length=380, Percent_Identity=23.6842105263158, Blast_Score=105, Evalue=1e-22,
Organism=Homo sapiens, GI19913428, Length=390, Percent_Identity=23.8461538461538, Blast_Score=100, Evalue=4e-21,
Organism=Homo sapiens, GI50345984, Length=364, Percent_Identity=24.7252747252747, Blast_Score=91, Evalue=3e-18,
Organism=Homo sapiens, GI4757810, Length=364, Percent_Identity=24.7252747252747, Blast_Score=91, Evalue=3e-18,
Organism=Escherichia coli, GI1790170, Length=457, Percent_Identity=50.54704595186, Blast_Score=458, Evalue=1e-130,
Organism=Escherichia coli, GI1788251, Length=308, Percent_Identity=30.5194805194805, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI1790172, Length=400, Percent_Identity=26.25, Blast_Score=103, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI25144756, Length=466, Percent_Identity=50.2145922746781, Blast_Score=462, Evalue=1e-130,
Organism=Caenorhabditis elegans, GI17565854, Length=320, Percent_Identity=29.0625, Blast_Score=112, Evalue=5e-25,
Organism=Caenorhabditis elegans, GI17570191, Length=424, Percent_Identity=23.5849056603774, Blast_Score=105, Evalue=8e-23,
Organism=Caenorhabditis elegans, GI17510931, Length=404, Percent_Identity=23.2673267326733, Blast_Score=100, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI71988063, Length=354, Percent_Identity=25.7062146892655, Blast_Score=98, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI71988080, Length=354, Percent_Identity=25.7062146892655, Blast_Score=98, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI71988074, Length=319, Percent_Identity=23.8244514106583, Blast_Score=75, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6322581, Length=458, Percent_Identity=51.9650655021834, Blast_Score=474, Evalue=1e-134,
Organism=Saccharomyces cerevisiae, GI6319603, Length=351, Percent_Identity=25.3561253561254, Blast_Score=108, Evalue=3e-24,
Organism=Saccharomyces cerevisiae, GI6319370, Length=368, Percent_Identity=25.5434782608696, Blast_Score=89, Evalue=1e-18,
Organism=Saccharomyces cerevisiae, GI6320016, Length=292, Percent_Identity=26.7123287671233, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24638766, Length=471, Percent_Identity=50.1061571125265, Blast_Score=463, Evalue=1e-130,
Organism=Drosophila melanogaster, GI28574560, Length=498, Percent_Identity=49.3975903614458, Blast_Score=446, Evalue=1e-125,
Organism=Drosophila melanogaster, GI20129479, Length=320, Percent_Identity=27.8125, Blast_Score=112, Evalue=7e-25,
Organism=Drosophila melanogaster, GI24583988, Length=320, Percent_Identity=28.75, Blast_Score=111, Evalue=2e-24,
Organism=Drosophila melanogaster, GI24583986, Length=320, Percent_Identity=28.75, Blast_Score=111, Evalue=2e-24,
Organism=Drosophila melanogaster, GI24583984, Length=320, Percent_Identity=28.75, Blast_Score=111, Evalue=2e-24,
Organism=Drosophila melanogaster, GI24583992, Length=322, Percent_Identity=28.5714285714286, Blast_Score=111, Evalue=2e-24,
Organism=Drosophila melanogaster, GI24658560, Length=364, Percent_Identity=26.0989010989011, Blast_Score=100, Evalue=4e-21,
Organism=Drosophila melanogaster, GI281361666, Length=382, Percent_Identity=23.8219895287958, Blast_Score=99, Evalue=9e-21,
Organism=Drosophila melanogaster, GI24646341, Length=382, Percent_Identity=23.8219895287958, Blast_Score=99, Evalue=9e-21,
Organism=Drosophila melanogaster, GI17136796, Length=382, Percent_Identity=23.8219895287958, Blast_Score=99, Evalue=9e-21,
Organism=Drosophila melanogaster, GI24638768, Length=92, Percent_Identity=47.8260869565217, Blast_Score=74, Evalue=3e-13,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 55380; Mature: 55249

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADPQATNGTGAVCAERDASDVGDVSDVGDARDEGAGRVVAVRGAVVDVAFDGGALPALN
CCCCCCCCCCCCEEECCCCCCCCCCHHCCCCCCCCCCEEEEEECEEEEEEECCCCCCCCC
EALTIPVDGAAPILAEVHAHLSDAAVRALALGPTGGLRRGAAVRATGGPIRVPVGDAVLG
CEEEEECCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCEEEECCCEEEECCCHHHHH
RLLSVTGAPGDDGAALAADVERRPIHRGAPLLAEQKSANALFATGIKVIDLLAPLAQGGK
HHHHHCCCCCCCCCEEEHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
AAMFGGAGVGKTVFVMELIHAMVERYRGISVFAGIGERSREGHEMLLDMRGSGVLGRTVL
EEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHCCCCCCCCCCEEE
VYGQMNEPPGARWRVPLTALAIAEYFRDERAQNVLLLMDNVFRFVQAGAEVSGLLGRLPS
EEECCCCCCCCEEECHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHHHHHHCHH
RVGYQPTLASEVAALQERIASVEGAAVTAIEAVYVPADDFTDPAVTAIAAHVDSMVVLSR
HCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
AMAAEGMYPAIDPVASSSILLDPLVVGEAHVEVAIEVRRVIEHYRELQDVIALLGIDELG
HHHHCCCCCCCCCCCCCCEEECCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCC
ADDRRLVGRARRLQRFLTQPFAVTEAFTGQAGASVEIADTIAGCRAILRGDCDDWRESSL
CCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCEEHHHHHHHHHHHHCCCCCHHHCCCE
YMVGTLDDARRKEAAAREADARREAAAAASGAGPGTTSDPASGSAEPQGARHGR
EEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ADPQATNGTGAVCAERDASDVGDVSDVGDARDEGAGRVVAVRGAVVDVAFDGGALPALN
CCCCCCCCCCCEEECCCCCCCCCCHHCCCCCCCCCCEEEEEECEEEEEEECCCCCCCCC
EALTIPVDGAAPILAEVHAHLSDAAVRALALGPTGGLRRGAAVRATGGPIRVPVGDAVLG
CEEEEECCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCEEEECCCEEEECCCHHHHH
RLLSVTGAPGDDGAALAADVERRPIHRGAPLLAEQKSANALFATGIKVIDLLAPLAQGGK
HHHHHCCCCCCCCCEEEHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
AAMFGGAGVGKTVFVMELIHAMVERYRGISVFAGIGERSREGHEMLLDMRGSGVLGRTVL
EEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHCCCCCCCCCCEEE
VYGQMNEPPGARWRVPLTALAIAEYFRDERAQNVLLLMDNVFRFVQAGAEVSGLLGRLPS
EEECCCCCCCCEEECHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHHHHHHCHH
RVGYQPTLASEVAALQERIASVEGAAVTAIEAVYVPADDFTDPAVTAIAAHVDSMVVLSR
HCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
AMAAEGMYPAIDPVASSSILLDPLVVGEAHVEVAIEVRRVIEHYRELQDVIALLGIDELG
HHHHCCCCCCCCCCCCCCEEECCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCC
ADDRRLVGRARRLQRFLTQPFAVTEAFTGQAGASVEIADTIAGCRAILRGDCDDWRESSL
CCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCEEHHHHHHHHHHHHCCCCCHHHCCCE
YMVGTLDDARRKEAAAREADARREAAAAASGAGPGTTSDPASGSAEPQGARHGR
EEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA