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The map label for this gene is ygdH [C]

Identifier: 126446065

GI number: 126446065

Start: 157475

End: 158434

Strand: Reverse

Name: ygdH [C]

Synonym: BMA10247_A0183

Alternate gene names: 126446065

Gene position: 158434-157475 (Counterclockwise)

Preceding gene: 126445869

Following gene: 126447900

Centisome position: 6.73

GC content: 71.04

Gene sequence:

>960_bases
ATGAACCCACCGCCCCCACCACGCGCCAAGCGCCGCCGAACGCGCGCCGCGTCCGCGTCCGCGTCCGCGTCCGCGCCCGG
AATGCGCCCGACGCCGCGCCGCACGCGCACCGCGCCGAAGCGCCGCGCGCCACTGTCGAGCACCGTCGAGCGGCTCGTAT
CGAGCCCGACGTATCGGCAGGCCGACGAGGATCTCGCGTTCCTGCAGCGCCCCGAAATGTGCGGCGTGCGCTTGCAGCTC
GACTACTGGAAGACCGAGGAAACGCTGCAACGCTTCGGCATCTGCGATACGGTGGTGGTCTACGGCAGCACGCGGATCGC
GTCGCCCGCCGTCGCGCGCGCGAGGCTCGCCGACGCGCAGCACCGGCTCGCCGAGCGTCCGAACGACCCCGAGCGCCGCC
ATGCGGTCAGCGTCGCGGTGCGGCTGCTCGAGCGCAGCCACTACTACGGCGTCGCGCGCGATCTCGGCCGGCTCGTCGGC
GAAACCGGCCGCTCGCCGCATCCTCGGCGCCTCACGATCATCACGGGCGGCGGTCCGGGCATCATGGAGGCGGCCAATCG
CGGCGCGCACGAGCGGGGCGCGCCGAGCATCGGGCTCAACATCACGCTGCCGCGCGAGCAATTCCCGAATCCCTACGTGA
CGCCCGAGCTGTGTTTTCGCTTCCATTACTTCGCGATCCGCAAGCTGCACCTGCTCGAACGCGCGAAGGCCGCGGTGTTC
TTTCCCGGCGGCTACGGCACCTGCGACGAGCTGTTCGAAGTGCTGACGCTGTTGCAGACCCGCAAGATCGCGCCGCTGCC
CGTCGTGCTCGTCAGCCGCGCGTTCTGGCGCTCGGCGGTCGATTTCGGGTTTCTCGTCGACGAAGGCATGATCGACCCGT
GCGACGCAGCGCTGTTCCGGTTCTGCGAAACCGCCGACGAGATCTGGGCCGCGATCGGCGGCCCGCACGGGCCGGCCTAG

Upstream 100 bases:

>100_bases
TCACATCCGCTTTGTCGGCCGACGTTGACCGCGATCAAGCGGCGCACAACGATCCGGCTTAACGTGGGTGTCGACTCGAT
CCTCCGTACCGGAGCGCGCG

Downstream 100 bases:

>100_bases
CGGCGCACGGCCCGGCCAATCGGTCGGCCGCCAGGCGAAGCGGCGGGGAGCGGCCCGGAACACCGCGGCCCGTCGCCATC
CGACCCGGCGCGACCCGGCG

Product: decarboxylase family protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MNPPPPPRAKRRRTRAASASASASAPGMRPTPRRTRTAPKRRAPLSSTVERLVSSPTYRQADEDLAFLQRPEMCGVRLQL
DYWKTEETLQRFGICDTVVVYGSTRIASPAVARARLADAQHRLAERPNDPERRHAVSVAVRLLERSHYYGVARDLGRLVG
ETGRSPHPRRLTIITGGGPGIMEAANRGAHERGAPSIGLNITLPREQFPNPYVTPELCFRFHYFAIRKLHLLERAKAAVF
FPGGYGTCDELFEVLTLLQTRKIAPLPVVLVSRAFWRSAVDFGFLVDEGMIDPCDAALFRFCETADEIWAAIGGPHGPA

Sequences:

>Translated_319_residues
MNPPPPPRAKRRRTRAASASASASAPGMRPTPRRTRTAPKRRAPLSSTVERLVSSPTYRQADEDLAFLQRPEMCGVRLQL
DYWKTEETLQRFGICDTVVVYGSTRIASPAVARARLADAQHRLAERPNDPERRHAVSVAVRLLERSHYYGVARDLGRLVG
ETGRSPHPRRLTIITGGGPGIMEAANRGAHERGAPSIGLNITLPREQFPNPYVTPELCFRFHYFAIRKLHLLERAKAAVF
FPGGYGTCDELFEVLTLLQTRKIAPLPVVLVSRAFWRSAVDFGFLVDEGMIDPCDAALFRFCETADEIWAAIGGPHGPA
>Mature_319_residues
MNPPPPPRAKRRRTRAASASASASAPGMRPTPRRTRTAPKRRAPLSSTVERLVSSPTYRQADEDLAFLQRPEMCGVRLQL
DYWKTEETLQRFGICDTVVVYGSTRIASPAVARARLADAQHRLAERPNDPERRHAVSVAVRLLERSHYYGVARDLGRLVG
ETGRSPHPRRLTIITGGGPGIMEAANRGAHERGAPSIGLNITLPREQFPNPYVTPELCFRFHYFAIRKLHLLERAKAAVF
FPGGYGTCDELFEVLTLLQTRKIAPLPVVLVSRAFWRSAVDFGFLVDEGMIDPCDAALFRFCETADEIWAAIGGPHGPA

Specific function: Unknown

COG id: COG1611

COG function: function code R; Predicted Rossmann fold nucleotide-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35401; Mature: 35401

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPPPPPRAKRRRTRAASASASASAPGMRPTPRRTRTAPKRRAPLSSTVERLVSSPTYRQ
CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCHHCCCHHHHHHHHHCCCCCCC
ADEDLAFLQRPEMCGVRLQLDYWKTEETLQRFGICDTVVVYGSTRIASPAVARARLADAQ
CHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHCCHHHEEEECCCHHCCHHHHHHHHHHHH
HRLAERPNDPERRHAVSVAVRLLERSHYYGVARDLGRLVGETGRSPHPRRLTIITGGGPG
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCH
IMEAANRGAHERGAPSIGLNITLPREQFPNPYVTPELCFRFHYFAIRKLHLLERAKAAVF
HHHHHHCCCCCCCCCCCCEEEEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEE
FPGGYGTCDELFEVLTLLQTRKIAPLPVVLVSRAFWRSAVDFGFLVDEGMIDPCDAALFR
ECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
FCETADEIWAAIGGPHGPA
HHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNPPPPPRAKRRRTRAASASASASAPGMRPTPRRTRTAPKRRAPLSSTVERLVSSPTYRQ
CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCHHCCCHHHHHHHHHCCCCCCC
ADEDLAFLQRPEMCGVRLQLDYWKTEETLQRFGICDTVVVYGSTRIASPAVARARLADAQ
CHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHCCHHHEEEECCCHHCCHHHHHHHHHHHH
HRLAERPNDPERRHAVSVAVRLLERSHYYGVARDLGRLVGETGRSPHPRRLTIITGGGPG
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCH
IMEAANRGAHERGAPSIGLNITLPREQFPNPYVTPELCFRFHYFAIRKLHLLERAKAAVF
HHHHHHCCCCCCCCCCCCEEEEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEE
FPGGYGTCDELFEVLTLLQTRKIAPLPVVLVSRAFWRSAVDFGFLVDEGMIDPCDAALFR
ECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
FCETADEIWAAIGGPHGPA
HHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA