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The map label for this gene is yhcS [C]

Identifier: 126445948

GI number: 126445948

Start: 1769096

End: 1770106

Strand: Reverse

Name: yhcS [C]

Synonym: BMA10247_A1839

Alternate gene names: 126445948

Gene position: 1770106-1769096 (Counterclockwise)

Preceding gene: 126447514

Following gene: 126445604

Centisome position: 75.24

GC content: 67.95

Gene sequence:

>1011_bases
ATGGATACGCTACAGAACATGCGGGTGTTCGCTCGCGTGGTGGAAGCGGGCAGCTTCACGGCGGCCGCGCAATCGCTGAA
CTCGACGACGGGCGCGATGTCGCGCGCGGTGTCCGAGCTCGAGGCACGGCTGCGCACGCGTTTGATGAATCGCTCGACGC
GGCGCCTCGCGTTGACGCCCGCGGGCGAGCGCTATCTGCTGCGCTGCCGGCAGATTCTCGCGGACGTCGATCAGGCGGAG
GAAGAGGCGAGCTGCGCGCACGAACGCCCGGCGGGCGTGCTGCGCATGCACAGCTTCGCGAGCATCGGCCAGCACTACGT
GCTGCCGGCGCTCACCGCGTATCGCAGCCAGCATCCGGACGTGTCGATCGAGCTCACGCTGTCGCAGCGGATGCCCGATC
TGTTCGACGGCTCGAGCGACATGGCGGTCGTGACCGCTTCATCGCTACCCGATTCCGAACTCGTATCGCATCTGCTCGGC
TCGACGTTCAGCATTCTGTGCGCGACGCCCGCGTATCTGCGCGCGCACGGCGCGCCGCGCACGCCGCGCGATCTCGCGCG
GCACGCATGCCTCACGCTGCGCACGCCGGCGTTCCCGACGAACGAATGGCTGCTCGAAGGGCCGAACGGCGCCGAGGAAA
TCAAGGTGGATGGCCCGGTGCAGACCAATACCGCCGAATCGCTCGCGGTGGCGATCCGCGCGGGCATCGGCATCGGCATG
CTGCCGCTCTATGCGGCGATCGAGGACCTGCGCTGCGGCAACCTCGTGCGCGTGCTGCCCGCGCACCGGCTGCAGAAGAT
GAACGTCTACGCGCTCTATCCGTCGCGCCGCTTCATCGATGCGAAAGTGCGCACCTGGGTCGAAGTGCTGCGCTTTCACA
TGCCGAAGATGATCGCGCGCGACGAGGCGATGCTGTCGGCGATCGTCGCGGAAGCGTCCGACGCGACGCAAAGCGCGATT
GCCGGGGCGCTCGACGTCGGGCTCGAATCGGCGCACGCGCTCAGTCACTGA

Upstream 100 bases:

>100_bases
GCATTAACGCGGGTGCGGGGAAACCATAGTTGCCGTGACGGCAACAATGCGGGGCCCTCGCTGGAGGACAATATCGTCTC
TACATACGTTTCGGACGGGA

Downstream 100 bases:

>100_bases
GCCCGCCGTTTTCCGATGTCGGCGCGATGCGCCGCCGCCCGTCGAGCGCGGCGGCGCATCGCGCGCATCGCGGATCGCGT
GTCGCCTATCGGATATCGCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 336; Mature: 336

Protein sequence:

>336_residues
MDTLQNMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTPAGERYLLRCRQILADVDQAE
EEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPDVSIELTLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLG
STFSILCATPAYLRAHGAPRTPRDLARHACLTLRTPAFPTNEWLLEGPNGAEEIKVDGPVQTNTAESLAVAIRAGIGIGM
LPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPSRRFIDAKVRTWVEVLRFHMPKMIARDEAMLSAIVAEASDATQSAI
AGALDVGLESAHALSH

Sequences:

>Translated_336_residues
MDTLQNMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTPAGERYLLRCRQILADVDQAE
EEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPDVSIELTLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLG
STFSILCATPAYLRAHGAPRTPRDLARHACLTLRTPAFPTNEWLLEGPNGAEEIKVDGPVQTNTAESLAVAIRAGIGIGM
LPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPSRRFIDAKVRTWVEVLRFHMPKMIARDEAMLSAIVAEASDATQSAI
AGALDVGLESAHALSH
>Mature_336_residues
MDTLQNMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTPAGERYLLRCRQILADVDQAE
EEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPDVSIELTLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLG
STFSILCATPAYLRAHGAPRTPRDLARHACLTLRTPAFPTNEWLLEGPNGAEEIKVDGPVQTNTAESLAVAIRAGIGIGM
LPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPSRRFIDAKVRTWVEVLRFHMPKMIARDEAMLSAIVAEASDATQSAI
AGALDVGLESAHALSH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789639, Length=292, Percent_Identity=35.6164383561644, Blast_Score=159, Evalue=3e-40,
Organism=Escherichia coli, GI1786401, Length=298, Percent_Identity=32.5503355704698, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI87081978, Length=288, Percent_Identity=33.3333333333333, Blast_Score=153, Evalue=1e-38,
Organism=Escherichia coli, GI145693193, Length=292, Percent_Identity=31.1643835616438, Blast_Score=149, Evalue=4e-37,
Organism=Escherichia coli, GI1789440, Length=286, Percent_Identity=29.3706293706294, Blast_Score=144, Evalue=1e-35,
Organism=Escherichia coli, GI1787128, Length=291, Percent_Identity=27.1477663230241, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1787589, Length=295, Percent_Identity=26.4406779661017, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1789173, Length=254, Percent_Identity=26.7716535433071, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787879, Length=154, Percent_Identity=33.1168831168831, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1788481, Length=304, Percent_Identity=28.9473684210526, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1788706, Length=241, Percent_Identity=24.0663900414938, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787601, Length=169, Percent_Identity=27.810650887574, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI87082132, Length=288, Percent_Identity=23.6111111111111, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1786448, Length=147, Percent_Identity=27.891156462585, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI145693105, Length=250, Percent_Identity=22.8, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36594; Mature: 36594

Theoretical pI: Translated: 7.34; Mature: 7.34

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTLQNMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTP
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECC
AGERYLLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPD
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCC
VSIELTLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHGAPR
EEEEEEEHHCCCHHHCCCCCEEEEEECCCCHHHHHHHHHCCHHHHHHCCHHHHHHCCCCC
TPRDLARHACLTLRTPAFPTNEWLLEGPNGAEEIKVDGPVQTNTAESLAVAIRAGIGIGM
CHHHHHHHHHHEECCCCCCCCCCEEECCCCCCEEEECCCCCCCCHHHHHHHHHHCCCHHH
LPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPSRRFIDAKVRTWVEVLRFHMPKMIAR
HHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
DEAMLSAIVAEASDATQSAIAGALDVGLESAHALSH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDTLQNMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTP
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECC
AGERYLLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPD
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCC
VSIELTLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHGAPR
EEEEEEEHHCCCHHHCCCCCEEEEEECCCCHHHHHHHHHCCHHHHHHCCHHHHHHCCCCC
TPRDLARHACLTLRTPAFPTNEWLLEGPNGAEEIKVDGPVQTNTAESLAVAIRAGIGIGM
CHHHHHHHHHHEECCCCCCCCCCEEECCCCCCEEEECCCCCCCCHHHHHHHHHHCCCHHH
LPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPSRRFIDAKVRTWVEVLRFHMPKMIAR
HHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
DEAMLSAIVAEASDATQSAIAGALDVGLESAHALSH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]