| Definition | Burkholderia mallei NCTC 10247 chromosome II, complete genome. |
|---|---|
| Accession | NC_009079 |
| Length | 2,352,693 |
Click here to switch to the map view.
The map label for this gene is 126445891
Identifier: 126445891
GI number: 126445891
Start: 1520862
End: 1523192
Strand: Reverse
Name: 126445891
Synonym: BMA10247_A1583
Alternate gene names: NA
Gene position: 1523192-1520862 (Counterclockwise)
Preceding gene: 126447952
Following gene: 126446820
Centisome position: 64.74
GC content: 73.14
Gene sequence:
>2331_bases ATGCCGAGGCAAGCCGACCCCGCTTCCCCGCGCGCGCCGCAAGCCGCCGCGTCCGCTTCTTCATCCGCGCGTTGCGCCGC GCCCGGCGCGGCGCCGCCGCAATCGGCACAACCGCCGCAATCGCCGCAATCGCCGCAATCGCCGCAACCGGCCCCGCCCA CGCCCGCGTTCATCGCGCCCGAGCCCGATGCGCAGAAGGCCGTGCGCGGCAGCCAGTTCGTGCTGAAGGCGGGCGACGCG TTCGTCGTGAGCGACGCGCTCGGCGACATCGCCGGGCGCGACGACGGCCTCTTCGTCGACGACATGCGCGTGCTGTCGCA ATGGCGGCTCACGTTCGGCGGCCGCGCGCCGTCGCTGCTGTCGGGGGCGACGAGCGCGGACAACGCGTCGTTCACCGCGC ACCTGACGAACCGTCCGCTGCCGCCGCTCGGCGGCCGCGAGACGCCCGAGGGCGTGATCCACATCGAGCGGATGCGCGTG CTTGCCGACAATGTGCTTCACGAGGCGCTCACGCTGACGAACTACGGCACGTGCGACGCCGAGGTGCCGCTGTCGGTGTC GTTCGGCGCGGACTTCAAGGACATGTTCGAAGTGCGCGGCTCGCGGCGCGAGCGGCGTGGCGCGGTCGCGCCGCCGTGCG TCGAGGCGGGCGCGGTCAGGCTGCGCTACGACGGGCTCGACGCGGTCGAGCGCAGCGTGCGGATCGGCTTCGAGCCGAAG CCCGACACGCTCGCCGTCGATCGCGCCGACTACACGCTGACGATCGCCGCGCAGGCGTGCGTGTCGCTGTATCTGACGGT CGAGGCGCGCGTGGGCGCCGCGCACGCGGGCGGCGACGCGTTCGCGCGGCGGCCGTGCGTCGCGACCGGGCGCGGCGCGC TGCGCAAGGCGCTGGCCGACGTGCACCGCGCGATGCGCGAGCGGCGCCGCACGATCGCGCGCGTGCACACGAGCAATCCG CTTTTCAACGCGTGGCTCGACCGCTCGCTCGCGGACCTGGGCCTGCTCACGACGTCGCTCGAAACCGGCCCGTACCCGTA CGCGGGCATTCCGTGGTTCTCGACGCCGTTCGGCCGCGACGCGGTGATCACGTCGCTGCAGATGTTGTGGCTGCAGCCGT CGCTCGCGCGCGGCGTGCTGCGCTTTCTCGCCGAGCATCAGGCGCGCGAGACATCGGCGTTTCGCGACGCGGAGCCGGGC AAGATCATGCACGAATTCCGCAAGAGCGAGATGGCGGCCACGGGCGAAGTGCCGTTCGCGCTGTACTACGGCGGCGTCGA TACCACGCCGTTGTTCGTCGTGCTCGCGGGCGCGTATCTCGAGTACACCGGCGACGAATCGCTGATCGACGAGCTGTGGC CCGCGCTCGAGCGCGCCGCGCAGTGGGTGAGCACCGTGTGCGAGCGCAACCCGCGCGGGCTGCTCGACTATCAGCGCACC TCCGCGCGCGGGCTCGCCAACCAGGGCTGGAAGGACAGCCAGGATTCGGTGTTCCATGCGGACGGCCGCTTCCCGAGCGG GCCGATCGCGCTCGTCGAAGTGCAGGCCTACGCGTGCGCGGCGTTCGACGCAATGGCGACGTTCTCGCGCCGGCGCGGCC ACGCGGCCGACACCGTGCGCTACGCGCAGCGCGCGAAGCGGCTGCGCGAGCAGGTCGAGGCGTTGTTCTGGATGCCCGAG GCGGGCTTCTACGGCATCGCGGTGGACGGCCACGGCGAGCTGTGCCGCGTGCTCGCGTCGAACGCCGCGCACCTGCTCGC GTTCGGCCTGCCCGAGCAGAGCCGCGGCGAATCGGTCGCGCGCGTGCTCGGCTCGACGCTGTTTCGCACCGGCTGGGGCG TGCGCACGCTCGCGGCCGGCCAGCCGCGCTTCAATCCGATGGCGTATCACAACGGCTCGATCTGGCCGCACGACAACGCG CTCGCCGCGCGCGGCCTCGCGCGCTACGGCGACAAGCGCGCGGTGCTCGATCTGTTGCGCGCGCTGTTCGAGGCGGCCGT GAGCTTCGACATGCGGCTGCCCGAGCTCTTCTGCGGCTTCCCGCGCCGGCGCGGCGAGCCGCCAACGGCGTATCCGGTCG CGTGCCTGCCGCAGGCGTGGGCGGCGGGCGCGCCGTTCATGATGCTGCAGGCTTGCCTCGGCATCTCGGTCGACGCGGCG CGCGGCGAGGTGCGCGTCGAGCGGCCCGAGCTGCCGGAAGGCGTCGATTGGCTGCGCGTCGACGATCTGCGCGTCGGCGG CGACAGCGTGTCGCTCACGTTCCGGCGCGTCGAGGGGCAGGTGGTCGCGGCGGCCGAGCCGGGCGGCGCGCGCGTCGTCG CGGTGCTGTAA
Upstream 100 bases:
>100_bases CCGGCCGGCGCGCACGCGGCTGCGCGCGGCGCGCATTCTGTCCTATCCTGTGCGGAAAACGCGGCGCACCCGGCGCGTCG CGCCCAGCCCAGGAGTTCCG
Downstream 100 bases:
>100_bases AGATTGCGCCCGCTCGCGTCGGGCGCGCGCGGCGCGCCATACAATGACGGCATCGATCAACGATTCGCAACGAACCGATA TCGGAGGCCCTCACCATGAC
Product: amylo-alpha-1,6-glucosidase
Products: NA
Alternate protein names: Amylo-Alpha-1 6-Glucosidase; Glycogen Debranching; Glycogen Debranching Protein; Amylo-Alpha-1 6-Glucosidase Family; Glycogen Debranching Family Protein; LOW QUALITY PROTEIN Amylo-Alpha-1 6-Glucosidase; Neutral Invertase; Glycoside Transferase; Amylo-Alpha-1 6-Glucosidase Protein; Glycogen Debranching -Like Protein; Amylo-Alpha-1 6-Glucosidase Family Protein
Number of amino acids: Translated: 776; Mature: 775
Protein sequence:
>776_residues MPRQADPASPRAPQAAASASSSARCAAPGAAPPQSAQPPQSPQSPQSPQPAPPTPAFIAPEPDAQKAVRGSQFVLKAGDA FVVSDALGDIAGRDDGLFVDDMRVLSQWRLTFGGRAPSLLSGATSADNASFTAHLTNRPLPPLGGRETPEGVIHIERMRV LADNVLHEALTLTNYGTCDAEVPLSVSFGADFKDMFEVRGSRRERRGAVAPPCVEAGAVRLRYDGLDAVERSVRIGFEPK PDTLAVDRADYTLTIAAQACVSLYLTVEARVGAAHAGGDAFARRPCVATGRGALRKALADVHRAMRERRRTIARVHTSNP LFNAWLDRSLADLGLLTTSLETGPYPYAGIPWFSTPFGRDAVITSLQMLWLQPSLARGVLRFLAEHQARETSAFRDAEPG KIMHEFRKSEMAATGEVPFALYYGGVDTTPLFVVLAGAYLEYTGDESLIDELWPALERAAQWVSTVCERNPRGLLDYQRT SARGLANQGWKDSQDSVFHADGRFPSGPIALVEVQAYACAAFDAMATFSRRRGHAADTVRYAQRAKRLREQVEALFWMPE AGFYGIAVDGHGELCRVLASNAAHLLAFGLPEQSRGESVARVLGSTLFRTGWGVRTLAAGQPRFNPMAYHNGSIWPHDNA LAARGLARYGDKRAVLDLLRALFEAAVSFDMRLPELFCGFPRRRGEPPTAYPVACLPQAWAAGAPFMMLQACLGISVDAA RGEVRVERPELPEGVDWLRVDDLRVGGDSVSLTFRRVEGQVVAAAEPGGARVVAVL
Sequences:
>Translated_776_residues MPRQADPASPRAPQAAASASSSARCAAPGAAPPQSAQPPQSPQSPQSPQPAPPTPAFIAPEPDAQKAVRGSQFVLKAGDA FVVSDALGDIAGRDDGLFVDDMRVLSQWRLTFGGRAPSLLSGATSADNASFTAHLTNRPLPPLGGRETPEGVIHIERMRV LADNVLHEALTLTNYGTCDAEVPLSVSFGADFKDMFEVRGSRRERRGAVAPPCVEAGAVRLRYDGLDAVERSVRIGFEPK PDTLAVDRADYTLTIAAQACVSLYLTVEARVGAAHAGGDAFARRPCVATGRGALRKALADVHRAMRERRRTIARVHTSNP LFNAWLDRSLADLGLLTTSLETGPYPYAGIPWFSTPFGRDAVITSLQMLWLQPSLARGVLRFLAEHQARETSAFRDAEPG KIMHEFRKSEMAATGEVPFALYYGGVDTTPLFVVLAGAYLEYTGDESLIDELWPALERAAQWVSTVCERNPRGLLDYQRT SARGLANQGWKDSQDSVFHADGRFPSGPIALVEVQAYACAAFDAMATFSRRRGHAADTVRYAQRAKRLREQVEALFWMPE AGFYGIAVDGHGELCRVLASNAAHLLAFGLPEQSRGESVARVLGSTLFRTGWGVRTLAAGQPRFNPMAYHNGSIWPHDNA LAARGLARYGDKRAVLDLLRALFEAAVSFDMRLPELFCGFPRRRGEPPTAYPVACLPQAWAAGAPFMMLQACLGISVDAA RGEVRVERPELPEGVDWLRVDDLRVGGDSVSLTFRRVEGQVVAAAEPGGARVVAVL >Mature_775_residues PRQADPASPRAPQAAASASSSARCAAPGAAPPQSAQPPQSPQSPQSPQPAPPTPAFIAPEPDAQKAVRGSQFVLKAGDAF VVSDALGDIAGRDDGLFVDDMRVLSQWRLTFGGRAPSLLSGATSADNASFTAHLTNRPLPPLGGRETPEGVIHIERMRVL ADNVLHEALTLTNYGTCDAEVPLSVSFGADFKDMFEVRGSRRERRGAVAPPCVEAGAVRLRYDGLDAVERSVRIGFEPKP DTLAVDRADYTLTIAAQACVSLYLTVEARVGAAHAGGDAFARRPCVATGRGALRKALADVHRAMRERRRTIARVHTSNPL FNAWLDRSLADLGLLTTSLETGPYPYAGIPWFSTPFGRDAVITSLQMLWLQPSLARGVLRFLAEHQARETSAFRDAEPGK IMHEFRKSEMAATGEVPFALYYGGVDTTPLFVVLAGAYLEYTGDESLIDELWPALERAAQWVSTVCERNPRGLLDYQRTS ARGLANQGWKDSQDSVFHADGRFPSGPIALVEVQAYACAAFDAMATFSRRRGHAADTVRYAQRAKRLREQVEALFWMPEA GFYGIAVDGHGELCRVLASNAAHLLAFGLPEQSRGESVARVLGSTLFRTGWGVRTLAAGQPRFNPMAYHNGSIWPHDNAL AARGLARYGDKRAVLDLLRALFEAAVSFDMRLPELFCGFPRRRGEPPTAYPVACLPQAWAAGAPFMMLQACLGISVDAAR GEVRVERPELPEGVDWLRVDDLRVGGDSVSLTFRRVEGQVVAAAEPGGARVVAVL
Specific function: Unknown
COG id: COG3408
COG function: function code G; Glycogen debranching enzyme
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 83830; Mature: 83699
Theoretical pI: Translated: 7.54; Mature: 7.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRQADPASPRAPQAAASASSSARCAAPGAAPPQSAQPPQSPQSPQSPQPAPPTPAFIAP CCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECC EPDAQKAVRGSQFVLKAGDAFVVSDALGDIAGRDDGLFVDDMRVLSQWRLTFGGRAPSLL CCCHHHHHCCCEEEEECCCEEEEEHHHHHHCCCCCCEEHHHHHHHHHHHHHCCCCCCHHH SGATSADNASFTAHLTNRPLPPLGGRETPEGVIHIERMRVLADNVLHEALTLTNYGTCDA CCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHEEHHHHHHHHHHHHHHHHHHCCCCCCCC EVPLSVSFGADFKDMFEVRGSRRERRGAVAPPCVEAGAVRLRYDGLDAVERSVRIGFEPK CCCEEEECCCCHHHHHHHHCCHHHHCCCCCCCCCCCCCEEEEECCHHHHHHHHCCCCCCC PDTLAVDRADYTLTIAAQACVSLYLTVEARVGAAHAGGDAFARRPCVATGRGALRKALAD CCCEEEECCCEEEEHHHHHHHHEEEEEEEECCCCCCCCCHHHCCCCCCCCHHHHHHHHHH VHRAMRERRRTIARVHTSNPLFNAWLDRSLADLGLLTTSLETGPYPYAGIPWFSTPFGRD HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCH AVITSLQMLWLQPSLARGVLRFLAEHQARETSAFRDAEPGKIMHEFRKSEMAATGEVPFA HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCEE LYYGGVDTTPLFVVLAGAYLEYTGDESLIDELWPALERAAQWVSTVCERNPRGLLDYQRT EEECCCCCCHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH SARGLANQGWKDSQDSVFHADGRFPSGPIALVEVQAYACAAFDAMATFSRRRGHAADTVR HHCCCCCCCCCCCCCCEEECCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCHHHHHH YAQRAKRLREQVEALFWMPEAGFYGIAVDGHGELCRVLASNAAHLLAFGLPEQSRGESVA HHHHHHHHHHHHHHHEECCCCCEEEEEECCCHHHHHHHHHCCCEEEEECCCCCCCHHHHH RVLGSTLFRTGWGVRTLAAGQPRFNPMAYHNGSIWPHDNALAARGLARYGDKRAVLDLLR HHHHHHHHHCCCCCEEEECCCCCCCCEEEECCCCCCCCCHHHHHHHHHHCCHHHHHHHHH ALFEAAVSFDMRLPELFCGFPRRRGEPPTAYPVACLPQAWAAGAPFMMLQACLGISVDAA HHHHHHHHHCCCCHHHHHCCCHHCCCCCCCCCHHHCCHHHHCCCHHHHHHHHHCCCEECC RGEVRVERPELPEGVDWLRVDDLRVGGDSVSLTFRRVEGQVVAAAEPGGARVVAVL CCCEEEECCCCCCCCCEEEEECEEECCCCEEEEEEEECCEEEEEECCCCCEEEEEC >Mature Secondary Structure PRQADPASPRAPQAAASASSSARCAAPGAAPPQSAQPPQSPQSPQSPQPAPPTPAFIAP CCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECC EPDAQKAVRGSQFVLKAGDAFVVSDALGDIAGRDDGLFVDDMRVLSQWRLTFGGRAPSLL CCCHHHHHCCCEEEEECCCEEEEEHHHHHHCCCCCCEEHHHHHHHHHHHHHCCCCCCHHH SGATSADNASFTAHLTNRPLPPLGGRETPEGVIHIERMRVLADNVLHEALTLTNYGTCDA CCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHEEHHHHHHHHHHHHHHHHHHCCCCCCCC EVPLSVSFGADFKDMFEVRGSRRERRGAVAPPCVEAGAVRLRYDGLDAVERSVRIGFEPK CCCEEEECCCCHHHHHHHHCCHHHHCCCCCCCCCCCCCEEEEECCHHHHHHHHCCCCCCC PDTLAVDRADYTLTIAAQACVSLYLTVEARVGAAHAGGDAFARRPCVATGRGALRKALAD CCCEEEECCCEEEEHHHHHHHHEEEEEEEECCCCCCCCCHHHCCCCCCCCHHHHHHHHHH VHRAMRERRRTIARVHTSNPLFNAWLDRSLADLGLLTTSLETGPYPYAGIPWFSTPFGRD HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCH AVITSLQMLWLQPSLARGVLRFLAEHQARETSAFRDAEPGKIMHEFRKSEMAATGEVPFA HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCEE LYYGGVDTTPLFVVLAGAYLEYTGDESLIDELWPALERAAQWVSTVCERNPRGLLDYQRT EEECCCCCCHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH SARGLANQGWKDSQDSVFHADGRFPSGPIALVEVQAYACAAFDAMATFSRRRGHAADTVR HHCCCCCCCCCCCCCCEEECCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCHHHHHH YAQRAKRLREQVEALFWMPEAGFYGIAVDGHGELCRVLASNAAHLLAFGLPEQSRGESVA HHHHHHHHHHHHHHHEECCCCCEEEEEECCCHHHHHHHHHCCCEEEEECCCCCCCHHHHH RVLGSTLFRTGWGVRTLAAGQPRFNPMAYHNGSIWPHDNALAARGLARYGDKRAVLDLLR HHHHHHHHHCCCCCEEEECCCCCCCCEEEECCCCCCCCCHHHHHHHHHHCCHHHHHHHHH ALFEAAVSFDMRLPELFCGFPRRRGEPPTAYPVACLPQAWAAGAPFMMLQACLGISVDAA HHHHHHHHHCCCCHHHHHCCCHHCCCCCCCCCHHHCCHHHHCCCHHHHHHHHHCCCEECC RGEVRVERPELPEGVDWLRVDDLRVGGDSVSLTFRRVEGQVVAAAEPGGARVVAVL CCCEEEECCCCCCCCCEEEEECEEECCCCEEEEEEEECCEEEEEECCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA