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The map label for this gene is deoC [H]

Identifier: 126445703

GI number: 126445703

Start: 109794

End: 110576

Strand: Direct

Name: deoC [H]

Synonym: BMA10247_A0130

Alternate gene names: 126445703

Gene position: 109794-110576 (Clockwise)

Preceding gene: 126446231

Following gene: 126446025

Centisome position: 4.67

GC content: 71.65

Gene sequence:

>783_bases
ATGGAGCTTTCGTTGAATCGCAACCAGTTGACCGAAGCGGCGCTCAAGGCGCTGCATCTGATCGATCTCACGTCGCTGAA
CGACGACGACACCGAAGAGAGGATCGCCTCGCTCGCCGCGTCGGCCGATACGCCGGTCGGCACGCCCGCCGCGCTGTGCG
TGTATCCGCGCTTCGTCGGCGCCGCGCATGCGGCGCTCGCGCGGCACGGGCTCGTGCTGCCCGTCGCGACCGTCACGAAT
TTTCCGCACGGCGCGGCCGATCCGGATGCGGCCGCGCGCGAGACGGCCGATGCGCTCGCGCGCGGCGCGGACGAAATCGA
TGTGGTGTTTCCGTATCGCGCGCTCATCGACGGCGACGAACGGGTCGGCCGCGAACTCGTCGCGCAGTGCCGCGCGGCGG
CGGGCGCGCAGTGCCTGAAGGTGATCCTCGAGACGGGCGAGTTGCGCGACGCGGCGGCGATCCGCCGCGCGAGCGAGATC
GCGATCGAGGAGGGCGCGGATTTTCTGAAGACGTCGACGGGCAAGGTCGCGGTGAACGCGACGCTCGACGCGGCGGCCGC
GATGCTCGCGACGATCCGCGTCGCGGGCCGCATGGTCGGCTTCAAGGCGGCGGGCGGCGTGCGCACCGCGCAGGACGCGG
CGCAGTACCTGTCGCTCGCGCAGCGCGAGCTCGGCCCGGGCTATCTGACGAGCGCGACGTTTCGCTTCGGCGCGTCGGGG
CTGCTCGGCAATCTGCTCGAGACGCTCGGGCACCGGGCAGGCGCGACGCGCGGCGCGTATTGA

Upstream 100 bases:

>100_bases
CGCTACGGCCTGCGCGCGCTCGCGGCCGCGACGCTGTCGAACCTGATGAGCGCGACGATCGCCGGGCTGTTCCTGTCCCT
TTCCTGAACGAGGTGCTCGC

Downstream 100 bases:

>100_bases
AACCGCGCGCACTGCGCCGCGCGTCGCGAAAAGGGCGGCGTCAGTCGAAACGCTCGCGCCGCGTTCGATCGCGAGCGGCA
CGCCGCTCGATGGGGATCAG

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MELSLNRNQLTEAALKALHLIDLTSLNDDDTEERIASLAASADTPVGTPAALCVYPRFVGAAHAALARHGLVLPVATVTN
FPHGAADPDAAARETADALARGADEIDVVFPYRALIDGDERVGRELVAQCRAAAGAQCLKVILETGELRDAAAIRRASEI
AIEEGADFLKTSTGKVAVNATLDAAAAMLATIRVAGRMVGFKAAGGVRTAQDAAQYLSLAQRELGPGYLTSATFRFGASG
LLGNLLETLGHRAGATRGAY

Sequences:

>Translated_260_residues
MELSLNRNQLTEAALKALHLIDLTSLNDDDTEERIASLAASADTPVGTPAALCVYPRFVGAAHAALARHGLVLPVATVTN
FPHGAADPDAAARETADALARGADEIDVVFPYRALIDGDERVGRELVAQCRAAAGAQCLKVILETGELRDAAAIRRASEI
AIEEGADFLKTSTGKVAVNATLDAAAAMLATIRVAGRMVGFKAAGGVRTAQDAAQYLSLAQRELGPGYLTSATFRFGASG
LLGNLLETLGHRAGATRGAY
>Mature_260_residues
MELSLNRNQLTEAALKALHLIDLTSLNDDDTEERIASLAASADTPVGTPAALCVYPRFVGAAHAALARHGLVLPVATVTN
FPHGAADPDAAARETADALARGADEIDVVFPYRALIDGDERVGRELVAQCRAAAGAQCLKVILETGELRDAAAIRRASEI
AIEEGADFLKTSTGKVAVNATLDAAAAMLATIRVAGRMVGFKAAGGVRTAQDAAQYLSLAQRELGPGYLTSATFRFGASG
LLGNLLETLGHRAGATRGAY

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 2 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=265, Percent_Identity=39.622641509434, Blast_Score=156, Evalue=2e-38,
Organism=Escherichia coli, GI1790841, Length=256, Percent_Identity=54.296875, Blast_Score=238, Evalue=2e-64,
Organism=Caenorhabditis elegans, GI17533015, Length=244, Percent_Identity=38.5245901639344, Blast_Score=156, Evalue=1e-38,
Organism=Drosophila melanogaster, GI19922098, Length=256, Percent_Identity=36.328125, Blast_Score=127, Evalue=9e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 26964; Mature: 26964

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELSLNRNQLTEAALKALHLIDLTSLNDDDTEERIASLAASADTPVGTPAALCVYPRFVG
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
AAHAALARHGLVLPVATVTNFPHGAADPDAAARETADALARGADEIDVVFPYRALIDGDE
HHHHHHHHCCCEEEHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECHHHHHCCHH
RVGRELVAQCRAAAGAQCLKVILETGELRDAAAIRRASEIAIEEGADFLKTSTGKVAVNA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHCCCCCEEEEH
TLDAAAAMLATIRVAGRMVGFKAAGGVRTAQDAAQYLSLAQRELGPGYLTSATFRFGASG
HHHHHHHHHHHHHHHHHHHCEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHH
LLGNLLETLGHRAGATRGAY
HHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MELSLNRNQLTEAALKALHLIDLTSLNDDDTEERIASLAASADTPVGTPAALCVYPRFVG
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
AAHAALARHGLVLPVATVTNFPHGAADPDAAARETADALARGADEIDVVFPYRALIDGDE
HHHHHHHHCCCEEEHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECHHHHHCCHH
RVGRELVAQCRAAAGAQCLKVILETGELRDAAAIRRASEIAIEEGADFLKTSTGKVAVNA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHCCCCCEEEEH
TLDAAAAMLATIRVAGRMVGFKAAGGVRTAQDAAQYLSLAQRELGPGYLTSATFRFGASG
HHHHHHHHHHHHHHHHHHHCEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHH
LLGNLLETLGHRAGATRGAY
HHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA